Mercurial > repos > iuc > trycycler_reconcile_msa
comparison macros.xml @ 0:4ac81df20c74 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trycycler commit 9d7c4277b0f96aacd466f2d497e08edcca3fa238"
| author | iuc |
|---|---|
| date | Thu, 11 Feb 2021 19:26:05 +0000 |
| parents | |
| children | 937ea677d437 |
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| -1:000000000000 | 0:4ac81df20c74 |
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| 1 <macros> | |
| 2 <token name="@TOOL_VERSION@">0.4.2</token> | |
| 3 <token name="@PIPELINE@"> | |
| 4 **Trycycler pipeline** | |
| 5 | |
| 6 :: | |
| 7 | |
| 8 Trycycler subsample: make maximally-independent read subsets of an appropriate depth. | |
| 9 ⬇ | |
| 10 Trycycler cluster: carries out complete-linkage clustering of all contig sequences. | |
| 11 ⬇ | |
| 12 Trycycler reconcile/msa: reconcile the contigs within each cluster and perform a multiple sequence alignment. | |
| 13 ⬇ | |
| 14 Trycycler partition: split the reads between the different clusters. | |
| 15 ⬇ | |
| 16 Trycycler consensus: generate a consensus contig sequence for each cluster. | |
| 17 | |
| 18 </token> | |
| 19 <xml name="edam_ontology"> | |
| 20 <edam_topics> | |
| 21 <edam_topic>topic_0196</edam_topic> | |
| 22 </edam_topics> | |
| 23 <edam_operations> | |
| 24 <edam_operation>operation_0525</edam_operation> | |
| 25 </edam_operations> | |
| 26 </xml> | |
| 27 <xml name="requirements"> | |
| 28 <requirements> | |
| 29 <requirement type="package" version="@TOOL_VERSION@">trycycler</requirement> | |
| 30 </requirements> | |
| 31 </xml> | |
| 32 <xml name="citations"> | |
| 33 <citations> | |
| 34 <citation type="bibtex"> | |
| 35 @misc{githubTrycycler, | |
| 36 author = {Ryan, Wick}, | |
| 37 year = {2020}, | |
| 38 title = {Trycycler}, | |
| 39 publisher = {GitHub}, | |
| 40 journal = {GitHub repository}, | |
| 41 url = {https://github.com/rrwick/Trycycler}, | |
| 42 } | |
| 43 </citation> | |
| 44 </citations> | |
| 45 </xml> | |
| 46 </macros> |