Mercurial > repos > iuc > trycycler_subsample

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trycycler commit e9abd8b86133e530d0395d85bca320a1af27a9b6
author iuc
date Tue, 02 Apr 2024 08:31:35 +0000
parents 2628f6790eda
children
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85658cabbbed "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trycycler commit 9d7c4277b0f96aacd466f2d497e08edcca3fa238"
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1 <macros>
6
6bfab4a4a988 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trycycler commit e9abd8b86133e530d0395d85bca320a1af27a9b6
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2 <token name="@TOOL_VERSION@">0.5.5</token>
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3 <token name="@PIPELINE@">
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4 **Trycycler pipeline**
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5
85658cabbbed "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trycycler commit 9d7c4277b0f96aacd466f2d497e08edcca3fa238"
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6 ::
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8 Trycycler subsample: make maximally-independent read subsets of an appropriate depth.
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9 ⬇
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10 Trycycler cluster: carries out complete-linkage clustering of all contig sequences.
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11 ⬇
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12 Trycycler reconcile/msa: reconcile the contigs within each cluster and perform a multiple sequence alignment.
85658cabbbed "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trycycler commit 9d7c4277b0f96aacd466f2d497e08edcca3fa238"
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13 ⬇
85658cabbbed "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trycycler commit 9d7c4277b0f96aacd466f2d497e08edcca3fa238"
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14 Trycycler partition: split the reads between the different clusters.
85658cabbbed "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trycycler commit 9d7c4277b0f96aacd466f2d497e08edcca3fa238"
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15 ⬇
85658cabbbed "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trycycler commit 9d7c4277b0f96aacd466f2d497e08edcca3fa238"
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16 Trycycler consensus: generate a consensus contig sequence for each cluster.
85658cabbbed "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trycycler commit 9d7c4277b0f96aacd466f2d497e08edcca3fa238"
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17
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18 </token>
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19 <xml name="edam_ontology">
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20 <edam_topics>
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21 <edam_topic>topic_0196</edam_topic>
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22 </edam_topics>
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23 <edam_operations>
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24 <edam_operation>operation_0525</edam_operation>
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25 </edam_operations>
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26 </xml>
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27 <xml name="requirements">
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28 <requirements>
85658cabbbed "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trycycler commit 9d7c4277b0f96aacd466f2d497e08edcca3fa238"
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29 <requirement type="package" version="@TOOL_VERSION@">trycycler</requirement>
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30 </requirements>
85658cabbbed "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trycycler commit 9d7c4277b0f96aacd466f2d497e08edcca3fa238"
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31 </xml>
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32 <xml name="citations">
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33 <citations>
85658cabbbed "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trycycler commit 9d7c4277b0f96aacd466f2d497e08edcca3fa238"
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34 <citation type="bibtex">
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35 @misc{githubTrycycler,
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36 author = {Ryan, Wick},
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37 year = {2020},
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38 title = {Trycycler},
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39 publisher = {GitHub},
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40 journal = {GitHub repository},
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41 url = {https://github.com/rrwick/Trycycler},
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42 }
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43 </citation>
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44 </citations>
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45 </xml>
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46 </macros>