Mercurial > repos > iuc > ucsc_axttomaf

comparison axttomaf.xml @ 1:f063c97a7f8f draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/axttomaf commit 303002db06287fb25306020c4391626842f52162
author iuc
date Sun, 22 Sep 2024 07:26:54 +0000
parents 8990ed3ff747
children 31a442afee19
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0:8990ed3ff747 1:f063c97a7f8f
1 <tool id="ucsc_axtomaf" name="axtToMaf" version="@TOOL_VERSION@+galaxy0" profile="21.05" license="MIT"> 1 <tool id="ucsc_axtomaf" name="axtToMaf" version="@TOOL_VERSION@+galaxy0" profile="21.05" license="MIT">
2 <description> 2 <description>
3 Convert dataset from axt to MAF format 3 Convert dataset from axt to MAF format
4 </description> 4 </description>
5 <macros> 5 <macros>
6 <token name="@TOOL_VERSION@">377</token> 6 <token name="@TOOL_VERSION@">469</token>
7 </macros> 7 </macros>
8 <xrefs> 8 <xrefs>
9 <xref type="bio.tools">UCSC_Genome_Browser_Utilities</xref> 9 <xref type="bio.tools">UCSC_Genome_Browser_Utilities</xref>
10 </xrefs> 10 </xrefs>
11 <requirements> 11 <requirements>
93 <help><![CDATA[ 93 <help><![CDATA[
94 **What it does** 94 **What it does**
95 95
96 `axtToMaf`_ is a tool to convert dataset from `axt format`_ to `MAF format`_. 96 `axtToMaf`_ is a tool to convert dataset from `axt format`_ to `MAF format`_.
97 97
98 For implementation details see axtToMaf's `source code`_.
99
98 .. _axtToMaf: http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/FOOTER.txt 100 .. _axtToMaf: http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/FOOTER.txt
99 .. _axt format: https://genome.ucsc.edu/goldenPath/help/axt.html 101 .. _axt format: https://genome.ucsc.edu/goldenPath/help/axt.html
100 .. _MAF format: https://genome.ucsc.edu/FAQ/FAQformat.html#format5 102 .. _MAF format: https://genome.ucsc.edu/FAQ/FAQformat.html#format5
103 .. _source code: https://github.com/ucscGenomeBrowser/kent/blob/master/src/hg/mouseStuff/axtToMaf/axtToMaf.c
101 ]]> </help> 104 ]]> </help>
102 <citations> 105 <citations>
103 <citation type="doi">10.1093/bib/bbs038</citation> 106 <citation type="doi">10.1093/bib/bbs038</citation>
104 </citations> 107 </citations>
105 </tool> 108 </tool>