# HG changeset patch
# User iuc
# Date 1726990029 0
# Node ID 7b0b810b495fcdd2ac18ec877da3398de60fb5fe
# Parent  fa0a3a618a57790bc36b07e4a14e5e955d4085f7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/chainprenet commit 303002db06287fb25306020c4391626842f52162

diff -r fa0a3a618a57 -r 7b0b810b495f chainprenet.xml
--- a/chainprenet.xml	Tue Aug 27 10:25:05 2024 +0000
+++ b/chainprenet.xml	Sun Sep 22 07:27:09 2024 +0000
@@ -3,7 +3,7 @@
         Remove chains that don't have a chance of being netted
     </description>
     <macros>
-        <token name="@TOOL_VERSION@">377</token>
+        <token name="@TOOL_VERSION@">469</token>
     </macros>
     <xrefs>
         <xref type="bio.tools">UCSC_Genome_Browser_Utilities</xref>
@@ -102,9 +102,14 @@
     <help><![CDATA[
 **What it does**
 
-`chainPreNet`_ is a tool to remove chains that don't have a chance of being netted
+`chainPreNet`_ is a tool to remove `chains`_ that don't have a chance of being `netted`_.
+
+For implementation details see chainPreNet's `source code`_.
 
 .. _chainPreNet: http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/FOOTER.txt
+.. _chains: https://genome.ucsc.edu/goldenPath/help/chain.html
+.. _netted: https://genome.ucsc.edu/goldenPath/help/net.html
+.. _source code: https://github.com/ucscGenomeBrowser/kent/blob/master/src/hg/mouseStuff/chainPreNet/chainPreNet.c
     ]]>    </help>
     <citations>
         <citation type="doi">10.1093/bib/bbs038</citation>