Mercurial > repos > iuc > ucsc_chainsort

comparison chainsort.xml @ 1:5815f5bd9ac8 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/chainsort commit 303002db06287fb25306020c4391626842f52162
author iuc
date Sun, 22 Sep 2024 07:27:14 +0000
parents fff37ce2d95d
children c953dbade109
comparison
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0:fff37ce2d95d 1:5815f5bd9ac8
41 </test> 41 </test>
42 </tests> 42 </tests>
43 <help><![CDATA[ 43 <help><![CDATA[
44 **What it does** 44 **What it does**
45 45
46 `chainSort`_ is a tool to sort chains. 46 `chainSort`_ is a tool to sort `chains`_.
47 47
48 Note this tool loads all chains into memory, so it is not suitable for large datasets. Instead, run chainSort on multiple small dataset, followed by chainMergeSort. 48 Note this tool loads all chains into memory, so it is not suitable for large datasets. Instead, run chainSort on multiple small dataset, followed by chainMergeSort.
49 49
50 For implementation details see chainSort's `source code`_.
51
50 .. _chainSort: http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/FOOTER.txt 52 .. _chainSort: http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/FOOTER.txt
51 ]]> </help> 53 .. _chains: https://genome.ucsc.edu/goldenPath/help/chain.html
54 .. _source code: https://github.com/ucscGenomeBrowser/kent/blob/master/src/hg/mouseStuff/chainSort/chainSort.c
55 ]]> </help>
52 <citations> 56 <citations>
53 <citation type="doi">10.1093/bib/bbs038</citation> 57 <citation type="doi">10.1093/bib/bbs038</citation>
54 </citations> 58 </citations>
55 </tool> 59 </tool>