Mercurial > repos > iuc > ucsc_chainsort

comparison test-data/sorted_query.chain @ 0:fff37ce2d95d draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc-tools/chainsort commit 976ad085a01ae065d02b9f8c9f8788e28d9b85cc
author iuc
date Mon, 26 Aug 2024 13:54:24 +0000
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comparison
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-1:000000000000 0:fff37ce2d95d
1 ##matrix=axtChain 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91
2 ##gapPenalties=axtChain O=400 E=30
3 chain 4568 hg38.chr20:10004760-11615810 1611050 + 49202 49378 mm39.chr2:136351215-137822786 1471571 + 42266 42438 13
4 99 4 0
5 73
6
7 chain 6916 hg38.chr20:10004760-11615810 1611050 + 87669 87836 mm39.chr2:136351215-137822786 1471571 + 87101 87269 7
8 58 0 1
9 109
10
11 chain 6961 hg38.chr20:10004760-11615810 1611050 + 84589 84726 mm39.chr2:136351215-137822786 1471571 + 87751 87887 6
12 83 1 0
13 53
14
15 chain 2152 hg38.chr20:10004760-11615810 1611050 + 148667 148736 mm39.chr2:136351215-137822786 1471571 + 158262 158331 15
16 10 1 0
17 38 0 1
18 20
19
20 chain 1248 hg38.chr20:10004760-11615810 1611050 + 195952 195990 mm39.chr2:136351215-137822786 1471571 + 189050 189087 20
21 22 2 0
22 5 0 1
23 9
24
25 chain 1336 hg38.chr20:10004760-11615810 1611050 + 195854 195904 mm39.chr2:136351215-137822786 1471571 + 189780 189830 18
26 50
27
28 chain 5958 hg38.chr20:10004760-11615810 1611050 + 288132 288220 mm39.chr2:136351215-137822786 1471571 + 258580 258668 9
29 88
30
31 chain 9256 hg38.chr20:10004760-11615810 1611050 + 288278 288554 mm39.chr2:136351215-137822786 1471571 + 260289 260601 4
32 34 8 0
33 38 0 2
34 9 0 17
35 11 0 24
36 15 0 1
37 161
38
39 chain 1012 hg38.chr20:10004760-11615810 1611050 + 361832 361870 mm39.chr2:136351215-137822786 1471571 + 345076 345108 25
40 20 6 0
41 12
42
43 chain 1280 hg38.chr20:10004760-11615810 1611050 + 398052 398107 mm39.chr2:136351215-137822786 1471571 + 364812 364861 19
44 11 1 0
45 7 0 1
46 15 6 0
47 15
48
49 chain 1838 hg38.chr20:10004760-11615810 1611050 + 469454 469477 mm39.chr2:136351215-137822786 1471571 + 409807 409830 16
50 23
51
52 chain 1201 hg38.chr20:10004760-11615810 1611050 + 580524 580629 mm39.chr2:136351215-137822786 1471571 + 516292 516362 22
53 14 3 0
54 16 19 0
55 19 13 0
56 21
57
58 chain 5421 hg38.chr20:10004760-11615810 1611050 + 890884 891032 mm39.chr2:136351215-137822786 1471571 - 646945 647095 11
59 25 0 2
60 123
61
62 chain 64329 hg38.chr20:10004760-11615810 1611050 + 879848 882025 mm39.chr2:136351215-137822786 1471571 - 648557 650527 2
63 24 0 1
64 52 12 0
65 46 0 6
66 24 1 0
67 63 0 1
68 6 0 9
69 78 14 0
70 25 0 4
71 14 4 0
72 4 19 0
73 12 9 0
74 43 77 0
75 19 2 0
76 37 2 0
77 61 1 0
78 16 0 4
79 74 0 7
80 51 1 0
81 30 17 0
82 18 1 0
83 28 0 2
84 125 0 13
85 8 0 14
86 8 0 3
87 88 5 0
88 35 0 1
89 5 0 1
90 6 0 7
91 21 0 1
92 27 4 0
93 64 10 0
94 46 2 0
95 42 1 0
96 54 0 1
97 12 1 0
98 115 3 0
99 10 0 1
100 27 1 0
101 20 1 0
102 42 21 0
103 20 2 0
104 50 11 0
105 8 27 0
106 45 1 0
107 26 11 0
108 5 3 0
109 28 2 0
110 34 1 0
111 24 0 2
112 39 1 0
113 29 3 0
114 68 17 0
115 4 0 3
116 29
117
118 chain 5873 hg38.chr20:10004760-11615810 1611050 + 796556 796658 mm39.chr2:136351215-137822786 1471571 + 722616 722717 10
119 31 1 0
120 70
121
122 chain 1399 hg38.chr20:10004760-11615810 1611050 + 796671 796752 mm39.chr2:136351215-137822786 1471571 + 722717 722799 17
123 30 5 0
124 8 3 0
125 27 0 9
126 8
127
128 chain 1170 hg38.chr20:10004760-11615810 1611050 + 806859 806881 mm39.chr2:136351215-137822786 1471571 + 737566 737588 23
129 22
130
131 chain 1208 hg38.chr20:10004760-11615810 1611050 + 1121156 1121254 mm39.chr2:136351215-137822786 1471571 + 1062631 1062720 21
132 9 0 1
133 12 7 0
134 12 4 0
135 13 0 1
136 41
137
138 chain 13332 hg38.chr20:10004760-11615810 1611050 + 266744 267005 mm39.chr2:136351215-137822786 1471571 - 1226958 1227276 3
139 17 0 14
140 111 2 0
141 42 3 0
142 39 0 47
143 31 0 1
144 16
145
146 chain 4864 hg38.chr20:10004760-11615810 1611050 + 1425778 1425898 mm39.chr2:136351215-137822786 1471571 + 1342678 1342798 12
147 120
148
149 chain 1030 hg38.chr20:10004760-11615810 1611050 + 1532147 1532161 mm39.chr2:136351215-137822786 1471571 + 1423235 1423249 24
150 14
151