Mercurial > repos > iuc > ucsc_fasplit
diff fasplit.xml @ 3:d3f58a0dc09d draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/fasplit commit 303002db06287fb25306020c4391626842f52162
| author | iuc |
|---|---|
| date | Sun, 22 Sep 2024 07:26:24 +0000 |
| parents | bf04bd405d5b |
| children |
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--- a/fasplit.xml Wed Feb 02 13:56:02 2022 +0000 +++ b/fasplit.xml Sun Sep 22 07:26:24 2024 +0000 @@ -1,11 +1,11 @@ -<tool id="fasplit" name="faSplit" version="@TOOL_VERSION@"> +<tool id="fasplit" name="faSplit" version="@TOOL_VERSION@" profile="22.05"> <description>Split a FASTA file</description> + <macros> + <token name="@TOOL_VERSION@">469</token> + </macros> <xrefs> <xref type="bio.tools">UCSC_Genome_Browser_Utilities</xref> </xrefs> - <macros> - <token name="@TOOL_VERSION@">377</token> - </macros> <requirements> <requirement type="package" version="@TOOL_VERSION@">ucsc-fasplit</requirement> </requirements> @@ -57,52 +57,52 @@ <element name="2" file="2.fa" /> <element name="3" file="3.fa" /> <element name="4" file="4.fa" /> - </output_collection> + </output_collection> </test> <test> <param name="input" ftype="fasta" value="CDS.fa"/> <param name="split_type" value="byname"/> <output_collection name="output_list" type="list"> <element name="ENSCAFT00000022939_canisfamiliaris" file="ENSCAFT00000022939_canisfamiliaris.fa" /> + <element name="ENSCAFT00000022963_canisfamiliaris" file="ENSCAFT00000022963_canisfamiliaris.fa" /> + <element name="ENSCAFT00000025950_canisfamiliaris" file="ENSCAFT00000025950_canisfamiliaris.fa" /> + <element name="ENSMUST00000026013_musmusculus" file="ENSMUST00000026013_musmusculus.fa" /> + <element name="ENSMUST00000040820_musmusculus" file="ENSMUST00000040820_musmusculus.fa" /> + <element name="ENSMUST00000041588_musmusculus" file="ENSMUST00000041588_musmusculus.fa" /> + <element name="ENSMUST00000091291_musmusculus" file="ENSMUST00000091291_musmusculus.fa" /> + <element name="ENSMUST00000100505_musmusculus" file="ENSMUST00000100505_musmusculus.fa" /> + <element name="ENSMUST00000110806_musmusculus" file="ENSMUST00000110806_musmusculus.fa" /> + <element name="ENSMUST00000153440_musmusculus" file="ENSMUST00000153440_musmusculus.fa" /> + <element name="ENSMUST00000163344_musmusculus" file="ENSMUST00000163344_musmusculus.fa" /> + <element name="ENSMUST00000168613_musmusculus" file="ENSMUST00000168613_musmusculus.fa" /> + <element name="ENSMUST00000173143_musmusculus" file="ENSMUST00000173143_musmusculus.fa" /> <element name="ENSMUST00000207100_musmusculus" file="ENSMUST00000207100_musmusculus.fa" /> - <element name="ENSSSCT00000014817_susscrofa" file="ENSSSCT00000014817_susscrofa.fa" /> - <element name="ENSCAFT00000022963_canisfamiliaris" file="ENSCAFT00000022963_canisfamiliaris.fa" /> <element name="ENSMUST00000208839_musmusculus" file="ENSMUST00000208839_musmusculus.fa" /> - <element name="ENSSSCT00000023183_susscrofa" file="ENSSSCT00000023183_susscrofa.fa" /> - <element name="ENSCAFT00000025950_canisfamiliaris" file="ENSCAFT00000025950_canisfamiliaris.fa" /> <element name="ENSPTRT00000019089_pantroglodytes" file="ENSPTRT00000019089_pantroglodytes.fa" /> - <element name="ENSSSCT00000032764_susscrofa" file="ENSSSCT00000032764_susscrofa.fa" /> - <element name="ENSMUST00000026013_musmusculus" file="ENSMUST00000026013_musmusculus.fa" /> <element name="ENSPTRT00000034846_pantroglodytes" file="ENSPTRT00000034846_pantroglodytes.fa" /> + <element name="ENSPTRT00000040520_pantroglodytes" file="ENSPTRT00000040520_pantroglodytes.fa" /> + <element name="ENSPTRT00000040521_pantroglodytes" file="ENSPTRT00000040521_pantroglodytes.fa" /> + <element name="ENSRNOT00000041155_rattusnorvegicus" file="ENSRNOT00000041155_rattusnorvegicus.fa" /> + <element name="ENSRNOT00000044009_rattusnorvegicus" file="ENSRNOT00000044009_rattusnorvegicus.fa" /> + <element name="ENSRNOT00000064726_rattusnorvegicus" file="ENSRNOT00000064726_rattusnorvegicus.fa" /> + <element name="ENSRNOT00000066674_rattusnorvegicus" file="ENSRNOT00000066674_rattusnorvegicus.fa" /> + <element name="ENSRNOT00000067448_rattusnorvegicus" file="ENSRNOT00000067448_rattusnorvegicus.fa" /> + <element name="ENSSSCT00000008295_susscrofa" file="ENSSSCT00000008295_susscrofa.fa" /> + <element name="ENSSSCT00000013404_susscrofa" file="ENSSSCT00000013404_susscrofa.fa" /> + <element name="ENSSSCT00000014817_susscrofa" file="ENSSSCT00000014817_susscrofa.fa" /> + <element name="ENSSSCT00000023183_susscrofa" file="ENSSSCT00000023183_susscrofa.fa" /> + <element name="ENSSSCT00000032764_susscrofa" file="ENSSSCT00000032764_susscrofa.fa" /> <element name="ENSSSCT00000033745_susscrofa" file="ENSSSCT00000033745_susscrofa.fa" /> - <element name="ENSMUST00000040820_musmusculus" file="ENSMUST00000040820_musmusculus.fa" /> - <element name="ENSPTRT00000040520_pantroglodytes" file="ENSPTRT00000040520_pantroglodytes.fa" /> <element name="ENSSSCT00000035258_susscrofa" file="ENSSSCT00000035258_susscrofa.fa" /> - <element name="ENSMUST00000041588_musmusculus" file="ENSMUST00000041588_musmusculus.fa" /> - <element name="ENSPTRT00000040521_pantroglodytes" file="ENSPTRT00000040521_pantroglodytes.fa" /> <element name="ENST00000302850_homosapiens" file="ENST00000302850_homosapiens.fa" /> - <element name="ENSMUST00000091291_musmusculus" file="ENSMUST00000091291_musmusculus.fa" /> - <element name="ENSRNOT00000041155_rattusnorvegicus" file="ENSRNOT00000041155_rattusnorvegicus.fa" /> <element name="ENST00000338702_homosapiens" file="ENST00000338702_homosapiens.fa" /> - <element name="ENSMUST00000100505_musmusculus" file="ENSMUST00000100505_musmusculus.fa" /> - <element name="ENSRNOT00000044009_rattusnorvegicus" file="ENSRNOT00000044009_rattusnorvegicus.fa" /> <element name="ENST00000340611_homosapiens" file="ENST00000340611_homosapiens.fa" /> - <element name="ENSMUST00000110806_musmusculus" file="ENSMUST00000110806_musmusculus.fa" /> - <element name="ENSRNOT00000064726_rattusnorvegicus" file="ENSRNOT00000064726_rattusnorvegicus.fa" /> <element name="ENST00000341500_homosapiens" file="ENST00000341500_homosapiens.fa" /> - <element name="ENSMUST00000153440_musmusculus" file="ENSMUST00000153440_musmusculus.fa" /> - <element name="ENSRNOT00000066674_rattusnorvegicus" file="ENSRNOT00000066674_rattusnorvegicus.fa" /> <element name="ENST00000378069_homosapiens" file="ENST00000378069_homosapiens.fa" /> - <element name="ENSMUST00000163344_musmusculus" file="ENSMUST00000163344_musmusculus.fa" /> - <element name="ENSRNOT00000067448_rattusnorvegicus" file="ENSRNOT00000067448_rattusnorvegicus.fa" /> <element name="ENST00000421712_homosapiens" file="ENST00000421712_homosapiens.fa" /> - <element name="ENSMUST00000168613_musmusculus" file="ENSMUST00000168613_musmusculus.fa" /> - <element name="ENSSSCT00000008295_susscrofa" file="ENSSSCT00000008295_susscrofa.fa" /> <element name="ENST00000542639_homosapiens" file="ENST00000542639_homosapiens.fa" /> - <element name="ENSMUST00000173143_musmusculus" file="ENSMUST00000173143_musmusculus.fa" /> - <element name="ENSSSCT00000013404_susscrofa" file="ENSSSCT00000013404_susscrofa.fa" /> <element name="ENST00000600492_homosapiens" file="ENST00000600492_homosapiens.fa" /> - </output_collection> + </output_collection> </test> </tests> <help><![CDATA[ @@ -110,8 +110,12 @@ `faSplit`_ is a tool to split a single FASTA file into several files. +For implementation details see faSplit's `source code`_. + .. _faSplit: http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/FOOTER.txt +.. _source code: https://github.com/ucscGenomeBrowser/kent/blob/master/src/utils/faSplit/faSplit.c ]]></help> <citations> + <citation type="doi">10.1093/bib/bbs038</citation> </citations> </tool>