# HG changeset patch # User iuc # Date 1725445950 0 # Node ID d2039064b27dbded2417300abdab378ad069633a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ucsc_tools/ucsc_netsyntenic commit 731f04b7f59bd92cc68ad1c7565ae35960e75645 diff -r 000000000000 -r d2039064b27d netsyntenic.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/netsyntenic.xml Wed Sep 04 10:32:30 2024 +0000 @@ -0,0 +1,43 @@ + + + Add synteny info to a net + + + 469 + + + UCSC_Genome_Browser_Utilities + + + ucsc-netsyntenic + + + + + + + + + + + + + + + + + + 10.1093/bib/bbs038 + + diff -r 000000000000 -r d2039064b27d test-data/input1.ucsc.net --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/input1.ucsc.net Wed Sep 04 10:32:30 2024 +0000 @@ -0,0 +1,991 @@ +##matrix=axtChain 16 91,-114,-31,-123,-114,100,-125,-31,-31,-125,100,-114,-123,-31,-114,91 +##gapPenalties=axtChain O=400 E=30 +net hg38.chr20:10004760-11615810 1611050 + fill 0 1582298 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