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comparison twobittofa.xml @ 4:3c6f9e8a4c17 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/twobittofa commit 303002db06287fb25306020c4391626842f52162
author iuc
date Sun, 22 Sep 2024 07:26:41 +0000
parents 8067dfa00ed2
children e9bbe2f71784
comparison
equal deleted inserted replaced
3:8067dfa00ed2 4:3c6f9e8a4c17
1 <tool id="ucsc-twobittofa" name="twoBitToFa" version="@TOOL_VERSION@"> 1 <tool id="ucsc-twobittofa" name="twoBitToFa" version="@TOOL_VERSION@" profile="22.05">
2 <description>Convert all or part of .2bit file to FASTA</description> 2 <description>Convert all or part of .2bit file to FASTA</description>
3 <macros>
4 <token name="@TOOL_VERSION@">469</token>
5 </macros>
3 <xrefs> 6 <xrefs>
4 <xref type="bio.tools">UCSC_Genome_Browser_Utilities</xref> 7 <xref type="bio.tools">UCSC_Genome_Browser_Utilities</xref>
5 </xrefs> 8 </xrefs>
6 <macros>
7 <token name="@TOOL_VERSION@">377</token>
8 </macros>
9 <requirements> 9 <requirements>
10 <requirement type="package" version="@TOOL_VERSION@">ucsc-twobittofa</requirement> 10 <requirement type="package" version="@TOOL_VERSION@">ucsc-twobittofa</requirement>
11 </requirements> 11 </requirements>
12 <version_command><![CDATA[ echo "@TOOL_VERSION@" ]]></version_command> 12 <version_command><![CDATA[ echo "@TOOL_VERSION@" ]]></version_command>
13 <command><![CDATA[ 13 <command><![CDATA[
55 </test> 55 </test>
56 </tests> 56 </tests>
57 <help><![CDATA[ 57 <help><![CDATA[
58 **What it does** 58 **What it does**
59 59
60 twoBitToFa is a tool to convert all or part of .2bit file to FASTA. 60 `twoBitToFa`_ is a tool to convert all or part of .2bit file to FASTA.
61 61
62 For more information, check the `user manual <https://genome.ucsc.edu/goldenpath/help/twoBit.html>`_. 62 For more information, check the `user manual <https://genome.ucsc.edu/goldenpath/help/twoBit.html>`_.
63
64 For implementation details see twoBitToFa's `source code`_.
65
66 .. _twoBitToFa: http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/FOOTER.txt
67 .. _source code: https://github.com/ucscGenomeBrowser/kent/blob/master/src/utils/twoBitToFa/twoBitToFa.c
63 ]]></help> 68 ]]></help>
64 <citations> 69 <citations>
70 <citation type="doi">10.1093/bib/bbs038</citation>
65 </citations> 71 </citations>
66 </tool> 72 </tool>