Mercurial > repos > iuc > ucsc_twobittofa

diff twobittofa.xml @ 4:3c6f9e8a4c17 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ucsc_tools/twobittofa commit 303002db06287fb25306020c4391626842f52162
author iuc
date Sun, 22 Sep 2024 07:26:41 +0000
parents 8067dfa00ed2
children
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--- a/twobittofa.xml	Wed Feb 02 13:56:20 2022 +0000
+++ b/twobittofa.xml	Sun Sep 22 07:26:41 2024 +0000
@@ -1,11 +1,11 @@
-<tool id="ucsc-twobittofa" name="twoBitToFa" version="@TOOL_VERSION@">
+<tool id="ucsc-twobittofa" name="twoBitToFa" version="@TOOL_VERSION@" profile="22.05">
     <description>Convert all or part of .2bit file to FASTA</description>
+    <macros>
+        <token name="@TOOL_VERSION@">469</token>
+    </macros>
     <xrefs>
         <xref type="bio.tools">UCSC_Genome_Browser_Utilities</xref>
     </xrefs>
-    <macros>
-        <token name="@TOOL_VERSION@">377</token>
-    </macros>
     <requirements>
         <requirement type="package" version="@TOOL_VERSION@">ucsc-twobittofa</requirement>
     </requirements>
@@ -57,10 +57,16 @@
     <help><![CDATA[
 **What it does**
 
-twoBitToFa is a tool to convert all or part of .2bit file to FASTA.
+`twoBitToFa`_ is a tool to convert all or part of .2bit file to FASTA.
 
 For more information, check the `user manual <https://genome.ucsc.edu/goldenpath/help/twoBit.html>`_.
+
+For implementation details see twoBitToFa's `source code`_.
+
+.. _twoBitToFa: http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/FOOTER.txt
+.. _source code: https://github.com/ucscGenomeBrowser/kent/blob/master/src/utils/twoBitToFa/twoBitToFa.c
     ]]></help>
     <citations>
+        <citation type="doi">10.1093/bib/bbs038</citation>
     </citations>
 </tool>