Mercurial > repos > iuc > umi_tools_count
comparison test-data/out_paired.log @ 0:8db56d2f8b72 draft
planemo upload commit c79a5f4a05156bb2a6035a844aa9ad8f0e59ecb5
author | iuc |
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date | Thu, 21 Jun 2018 15:20:14 -0400 |
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-1:000000000000 | 0:8db56d2f8b72 |
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1 # output generated by extract --bc-pattern=NNNXXX --stdin=input_read1.gz --read2-in=input_read2.gz --stdout out1.gz --read2-out=out2.gz --log=/tmp/tmpAvWtMd/files/000/dataset_20.dat | |
2 # job started at Wed Jan 3 17:06:39 2018 on tzk-ThinkPad-T450s -- 9eecaab6-9562-4b29-8a2e-ae6c1034a14c | |
3 # pid: 22903, system: Linux 4.10.0-42-generic #46~16.04.1-Ubuntu SMP Mon Dec 4 15:57:59 UTC 2017 x86_64 | |
4 # blacklist : None | |
5 # compresslevel : 6 | |
6 # error_correct_cell : False | |
7 # extract_method : string | |
8 # filter_cell_barcode : None | |
9 # filter_cell_barcodes : False | |
10 # log2stderr : False | |
11 # loglevel : 1 | |
12 # pattern : NNNXXX | |
13 # pattern2 : None | |
14 # prime3 : None | |
15 # quality_encoding : None | |
16 # quality_filter_mask : None | |
17 # quality_filter_threshold : None | |
18 # random_seed : None | |
19 # read2_in : input_read2.gz | |
20 # read2_out : out2.gz | |
21 # read2_stdout : False | |
22 # reads_subset : None | |
23 # reconcile : False | |
24 # retain_umi : None | |
25 # short_help : None | |
26 # stderr : <_io.TextIOWrapper name='<stderr>' mode='w' encoding='UTF-8'> | |
27 # stdin : <_io.TextIOWrapper name='input_read1.gz' encoding='ascii'> | |
28 # stdlog : <_io.TextIOWrapper name='/tmp/tmpAvWtMd/files/000/dataset_20.dat' mode='a' encoding='UTF-8'> | |
29 # stdout : <_io.TextIOWrapper name='out1.gz' encoding='ascii'> | |
30 # timeit_file : None | |
31 # timeit_header : None | |
32 # timeit_name : all | |
33 # whitelist : None | |
34 2018-01-03 17:06:39,365 INFO Starting barcode extraction | |
35 2018-01-03 17:06:39,377 INFO Input Reads: 100 | |
36 2018-01-03 17:06:39,377 INFO Reads output: 100 | |
37 # job finished in 0 seconds at Wed Jan 3 17:06:39 2018 -- 0.60 0.05 0.00 0.00 -- 9eecaab6-9562-4b29-8a2e-ae6c1034a14c |