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comparison test-data/out_single.log @ 0:8db56d2f8b72 draft

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planemo upload commit c79a5f4a05156bb2a6035a844aa9ad8f0e59ecb5
author iuc
date Thu, 21 Jun 2018 15:20:14 -0400
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-1:000000000000 0:8db56d2f8b72
1 # output generated by extract --bc-pattern=XXXNNN --stdin=/tmp/tmpAvWtMd/files/000/dataset_13.dat --stdout /tmp/tmpAvWtMd/files/000/dataset_14.dat --3prime --quality-filter-threshold 10 --quality-encoding phred33 --log=/tmp/tmpAvWtMd/files/000/dataset_15.dat
2 # job started at Wed Jan 3 17:06:20 2018 on tzk-ThinkPad-T450s -- 8897b3b4-c6e2-4ee3-b6c0-71044a63b7e1
3 # pid: 22794, system: Linux 4.10.0-42-generic #46~16.04.1-Ubuntu SMP Mon Dec 4 15:57:59 UTC 2017 x86_64
4 # blacklist : None
5 # compresslevel : 6
6 # error_correct_cell : False
7 # extract_method : string
8 # filter_cell_barcode : None
9 # filter_cell_barcodes : False
10 # log2stderr : False
11 # loglevel : 1
12 # pattern : XXXNNN
13 # pattern2 : None
14 # prime3 : True
15 # quality_encoding : phred33
16 # quality_filter_mask : None
17 # quality_filter_threshold : 10
18 # random_seed : None
19 # read2_in : None
20 # read2_out : False
21 # read2_stdout : False
22 # reads_subset : None
23 # reconcile : False
24 # retain_umi : None
25 # short_help : None
26 # stderr : <_io.TextIOWrapper name='<stderr>' mode='w' encoding='UTF-8'>
27 # stdin : <_io.TextIOWrapper name='/tmp/tmpAvWtMd/files/000/dataset_13.dat' mode='r' encoding='UTF-8'>
28 # stdlog : <_io.TextIOWrapper name='/tmp/tmpAvWtMd/files/000/dataset_15.dat' mode='a' encoding='UTF-8'>
29 # stdout : <_io.TextIOWrapper name='/tmp/tmpAvWtMd/files/000/dataset_14.dat' mode='w' encoding='UTF-8'>
30 # timeit_file : None
31 # timeit_header : None
32 # timeit_name : all
33 # whitelist : None
34 2018-01-03 17:06:20,360 INFO Starting barcode extraction
35 2018-01-03 17:06:20,362 INFO Input Reads: 100
36 2018-01-03 17:06:20,362 INFO Reads output: 72
37 2018-01-03 17:06:20,362 INFO filtered: umi quality: 28
38 # job finished in 0 seconds at Wed Jan 3 17:06:20 2018 -- 0.58 0.06 0.00 0.00 -- 8897b3b4-c6e2-4ee3-b6c0-71044a63b7e1