Mercurial > repos > iuc > umi_tools_count

comparison test-data/out_wl_paired.log @ 0:8db56d2f8b72 draft

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planemo upload commit c79a5f4a05156bb2a6035a844aa9ad8f0e59ecb5
author iuc
date Thu, 21 Jun 2018 15:20:14 -0400
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children e654095ab143
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-1:000000000000 0:8db56d2f8b72
1 # output generated by whitelist --bc-pattern=CCCNNNNNNNNXXXXX --subset-reads=0 --stdin=/tmp/tmpibtvD6/files/000/dataset_5.dat --read2-in=/tmp/tmpibtvD6/files/000/dataset_6.dat --expect-cells=5 --error-correct-threshold=3 --method=reads --plot-prefix=OUT --log=/tmp/tmpibtvD6/files/000/dataset_8.dat
2 # job started at Sun Feb 25 10:50:16 2018 on bag -- e78e4e5b-e99e-426a-8a92-c8b3beeadf18
3 # pid: 2385, system: Linux 4.13.0-32-generic #35-Ubuntu SMP Thu Jan 25 09:13:46 UTC 2018 x86_64
4 # blacklist_tsv : None
5 # cell_number : False
6 # compresslevel : 6
7 # error_correct_threshold : 3
8 # expect_cells : 5
9 # extract_method : string
10 # filter_cell_barcodes : False
11 # log2stderr : False
12 # loglevel : 1
13 # method : reads
14 # pattern : CCCNNNNNNNNXXXXX
15 # pattern2 : None
16 # plot_prefix : OUT
17 # prime3 : None
18 # random_seed : None
19 # read2_in : /tmp/tmpibtvD6/files/000/dataset_6.dat
20 # short_help : None
21 # stderr : <_io.TextIOWrapper name='<stderr>' mode='w' encoding='UTF-8'>
22 # stdin : <_io.TextIOWrapper name='/tmp/tmpibtvD6/files/000/dataset_5.dat' mode='r' encoding='UTF-8'>
23 # stdlog : <_io.TextIOWrapper name='/tmp/tmpibtvD6/files/000/dataset_8.dat' mode='a' encoding='UTF-8'>
24 # stdout : <_io.TextIOWrapper name='<stdout>' mode='w' encoding='UTF-8'>
25 # subset_reads : 0
26 # timeit_file : None
27 # timeit_header : None
28 # timeit_name : all
29 # whitelist_tsv : None
30 2018-02-25 10:50:16,016 INFO Starting barcode extraction
31 2018-02-25 10:50:16,017 INFO Parsed 0 reads
32 2018-02-25 10:50:16,019 INFO Starting - whitelist determination
33 2018-02-25 10:50:17,208 INFO Finished - whitelist determination
34 2018-02-25 10:50:17,208 INFO Starting - finding putative error cell barcodes
35 2018-02-25 10:50:17,208 INFO Finished - finding putative error cell barcodes
36 2018-02-25 10:50:17,208 INFO Writing out whitelist
37 2018-02-25 10:50:17,208 INFO Parsed 100 reads
38 2018-02-25 10:50:17,208 INFO 100 reads matched the barcode pattern
39 2018-02-25 10:50:17,208 INFO Found 23 unique cell barcodes
40 # job finished in 1 seconds at Sun Feb 25 10:50:17 2018 -- 2.35 0.08 0.00 0.00 -- e78e4e5b-e99e-426a-8a92-c8b3beeadf18