# HG changeset patch
# User iuc
# Date 1529608814 14400
# Node ID 8db56d2f8b728b76a7b0c85361bc3988f2086898

planemo upload commit c79a5f4a05156bb2a6035a844aa9ad8f0e59ecb5

diff -r 000000000000 -r 8db56d2f8b72 macros.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/macros.xml	Thu Jun 21 15:20:14 2018 -0400
@@ -0,0 +1,88 @@
+<?xml version="1.0"?>
+<macros>
+    <macro name="barcode2_conditional" >
+        <conditional name="barcode">
+            <param name="barcode_select" argument="--split-barcode" type="select" label="Barcode on both reads?">
+                <option value="first_read_only">Barcode on first read only</option>
+                <option value="both_reads">Barcode on both reads</option>
+            </param>
+            <when value="first_read_only"/>
+            <when value="both_reads">
+                <param name="bc_pattern2" argument="--bc-pattern2" type="text" value="" label="Barcode pattern for second read"
+                       help="Use this option to specify the format of the UMI/barcode for
+                             the second read pair if required." >
+                </param>
+            </when>
+        </conditional>
+    </macro>
+    <xml name="input_types">
+        <conditional name="input_type">
+            <param name="type" type="select" label="Library type">
+                <option value="single">Single-end</option>
+                <option value="paired">Paired-end</option>
+                <option value="paired_collection">Paired-end Dataset Collection</option>
+            </param>
+            <when value="single">
+                <param name="input_single" type="data" format="fastq,fastq.gz" label="Reads in FASTQ format" />
+            </when>
+            <when value="paired">
+                <param name="input_read1" type="data" format="fastq,fastq.gz" label="Reads in FASTQ format" />
+                <param name="input_read2" type="data" format="fastq,fastq.gz" label="Reads in FASTQ format" />
+                <expand macro="barcode2_conditional" />
+            </when>
+            <when value="paired_collection">
+                <param name="input_readpair" type="data_collection" collection_type="paired" format="fastq,fastq.gz" label="Reads in FASTQ format" />
+                <expand macro="barcode2_conditional" />
+            </when>
+        </conditional>
+    </xml>
+    <xml name="citations">
+        <citations>
+            <citation type="doi">10.1101/gr.209601.116</citation>
+            <citation type="bibtex">
+                @misc{githubUMI-tools,
+                title = {UMI-tools},
+                publisher = {GitHub},
+                journal = {GitHub repository},
+                url = {https://github.com/CGATOxford/UMI-tools},
+                }
+            </citation>
+        </citations>
+    </xml>
+    <xml name="requirements">
+        <requirements>
+            <requirement type="package" version="@VERSION@">umi_tools</requirement>
+            <yield />
+        </requirements>
+    </xml>
+    <token name="@VERSION@">0.5.3</token>
+    <token name="@COMMAND_LINK@"><![CDATA[
+        #set $gz = False
+        #if $input_type.type == 'single':
+            #if $input_type.input_single.is_of_type("fastq.gz", "fastqsanger.gz"):
+                ln -s '$input_type.input_single' input_single.gz &&
+                #set $gz = True
+            #else
+                ln -s '$input_type.input_single' input_single.txt &&
+            #end if
+        #elif $input_type.type == 'paired':
+            #if $input_type.input_read1.is_of_type("fastq.gz", "fastqsanger.gz"):
+                ln -s '$input_type.input_read1' input_read1.gz &&
+                ln -s '$input_type.input_read2' input_read2.gz &&
+                #set $gz = True
+            #else
+                ln -s '$input_type.input_read1' input_read1.txt &&
+                ln -s '$input_type.input_read2' input_read2.txt &&
+            #end if
+        #else  ## paired_collection
+            #if $input_type.input_readpair.forward.is_of_type("fastq.gz", "fastqsanger.gz"):
+                ln -s '$input_type.input_readpair.forward' input_read1.gz &&
+                ln -s '$input_type.input_readpair.reverse' input_read2.gz &&
+                #set $gz = True
+            #else
+                ln -s '$input_type.input_readpair.forward' input_read1.txt &&
+                ln -s '$input_type.input_readpair.reverse' input_read2.txt &&
+            #end if
+        #end if
+    ]]></token>
+</macros>
diff -r 000000000000 -r 8db56d2f8b72 test-data/chr19_gene_tags.bam
Binary file test-data/chr19_gene_tags.bam has changed
diff -r 000000000000 -r 8db56d2f8b72 test-data/count_single_cells_gene_tag.tsv
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/count_single_cells_gene_tag.tsv	Thu Jun 21 15:20:14 2018 -0400
@@ -0,0 +1,23 @@
+gene	cell	count
+ENSG00000011304.18	ACAAGG	33
+ENSG00000011304.18	TTCACG	24
+ENSG00000065268.10	ACAAGG	4
+ENSG00000065268.10	TTCACG	11
+ENSG00000070404.9	TTCACG	1
+ENSG00000070423.17	ACAAGG	2
+ENSG00000070423.17	TTCACG	4
+ENSG00000099804.8	ACAAGG	5
+ENSG00000099804.8	TTCACG	4
+ENSG00000099821.13	ACAAGG	6
+ENSG00000099821.13	TTCACG	1
+ENSG00000099864.17	TTCACG	2
+ENSG00000105556.11	ACAAGG	2
+ENSG00000105556.11	TTCACG	3
+ENSG00000116017.10	ACAAGG	7
+ENSG00000116017.10	TTCACG	18
+ENSG00000172270.18	ACAAGG	9
+ENSG00000172270.18	TTCACG	3
+ENSG00000175221.14	ACAAGG	1
+ENSG00000175221.14	TTCACG	3
+ENSG00000198858.9	ACAAGG	1
+ENSG00000267751.5	TTCACG	1
diff -r 000000000000 -r 8db56d2f8b72 test-data/count_single_cells_gene_tag_wide.tsv
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/count_single_cells_gene_tag_wide.tsv	Thu Jun 21 15:20:14 2018 -0400
@@ -0,0 +1,14 @@
+gene	ACAAGG	TTCACG
+ENSG00000011304.18	33	24
+ENSG00000065268.10	4	11
+ENSG00000070404.9	0	1
+ENSG00000070423.17	2	4
+ENSG00000099804.8	5	4
+ENSG00000099821.13	6	1
+ENSG00000099864.17	0	2
+ENSG00000105556.11	2	3
+ENSG00000116017.10	7	18
+ENSG00000172270.18	9	3
+ENSG00000175221.14	1	3
+ENSG00000198858.9	1	0
+ENSG00000267751.5	0	1
diff -r 000000000000 -r 8db56d2f8b72 test-data/count_single_gene_tag.tsv
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/count_single_gene_tag.tsv	Thu Jun 21 15:20:14 2018 -0400
@@ -0,0 +1,14 @@
+gene	count
+ENSG00000011304.18	54
+ENSG00000065268.10	15
+ENSG00000070404.9	1
+ENSG00000070423.17	6
+ENSG00000099804.8	9
+ENSG00000099821.13	7
+ENSG00000099864.17	2
+ENSG00000105556.11	5
+ENSG00000116017.10	24
+ENSG00000172270.18	12
+ENSG00000175221.14	4
+ENSG00000198858.9	1
+ENSG00000267751.5	1
diff -r 000000000000 -r 8db56d2f8b72 test-data/dedup_out1.bam
Binary file test-data/dedup_out1.bam has changed
diff -r 000000000000 -r 8db56d2f8b72 test-data/dedup_out2.bam
Binary file test-data/dedup_out2.bam has changed
diff -r 000000000000 -r 8db56d2f8b72 test-data/dedup_out3.bam
Binary file test-data/dedup_out3.bam has changed
diff -r 000000000000 -r 8db56d2f8b72 test-data/dedup_out4.bam
Binary file test-data/dedup_out4.bam has changed
diff -r 000000000000 -r 8db56d2f8b72 test-data/dedup_out5.bam
Binary file test-data/dedup_out5.bam has changed
diff -r 000000000000 -r 8db56d2f8b72 test-data/dedup_out6.bam
Binary file test-data/dedup_out6.bam has changed
diff -r 000000000000 -r 8db56d2f8b72 test-data/group_in1.sam
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/group_in1.sam	Thu Jun 21 15:20:14 2018 -0400
@@ -0,0 +1,666 @@
+@HD	VN:1.0	SO:coordinate
+@PG	ID:Bowtie	VN:1.1.2	CL:"bowtie --wrapper basic-0 --threads 4 -v 2 -m 10 -a /ifs/mirror/genomes/bowtie/mm9 /dev/fd/63 --sam"
+@SQ	SN:chr10	LN:129993255
+@SQ	SN:chr11	LN:121843856
+@SQ	SN:chr12	LN:121257530
+@SQ	SN:chr13	LN:120284312
+@SQ	SN:chr14	LN:125194864
+@SQ	SN:chr15	LN:103494974
+@SQ	SN:chr16	LN:98319150
+@SQ	SN:chr17	LN:95272651
+@SQ	SN:chr18	LN:90772031
+@SQ	SN:chr19	LN:61342430
+@SQ	SN:chr1	LN:197195432
+@SQ	SN:chr2	LN:181748087
+@SQ	SN:chr3	LN:159599783
+@SQ	SN:chr4	LN:155630120
+@SQ	SN:chr5	LN:152537259
+@SQ	SN:chr6	LN:149517037
+@SQ	SN:chr7	LN:152524553
+@SQ	SN:chr8	LN:131738871
+@SQ	SN:chr9	LN:124076172
+@SQ	SN:chrM	LN:16299
+@SQ	SN:chrX	LN:166650296
+@SQ	SN:chrY	LN:15902555
+SRR2057595.10000392_AAGTA	16	chr19	31326011	255	57M	*	0	0	*	*	XA:i:1	MD:Z:23A33	NM:i:1	UG:i:512	BX:Z:AAGTA
+SRR2057595.10000468_GCTAT	16	chr19	61240267	255	28M	*	0	0	*	*	XA:i:1	MD:Z:11C16	NM:i:1	UG:i:706	BX:Z:GCTAT
+SRR2057595.10000704_TGATG	16	chr19	3544146	255	39M	*	0	0	*	*	XA:i:0	MD:Z:39	NM:i:0	UG:i:1	BX:Z:TGATG
+SRR2057595.10000838_TAGTA	0	chr19	10274608	255	34M	*	0	0	*	*	XA:i:0	MD:Z:34	NM:i:0	UG:i:324	BX:Z:TAGTA
+SRR2057595.10001118_TCTCA	16	chr19	4078298	255	50M	*	0	0	*	*	XA:i:1	MD:Z:43A6	NM:i:1	UG:i:36	BX:Z:TCTCA
+SRR2057595.10001329_CGGTC	16	chr19	28083193	255	60M	*	0	0	*	*	XA:i:0	MD:Z:60	NM:i:0	UG:i:497	BX:Z:CGGTC
+SRR2057595.10001382_CTGCC	16	chr19	3957282	255	22M	*	0	0	*	*	XA:i:2	MD:Z:17C1G2	NM:i:2	UG:i:9	BX:Z:CTGCC
+SRR2057595.10001382_CTGCC	16	chr19	3970897	255	22M	*	0	0	*	*	XA:i:2	MD:Z:17C1G2	NM:i:2	UG:i:10	BX:Z:CTGCC
+SRR2057595.10002047_ATTAT	16	chr19	7546213	255	27M	*	0	0	*	*	XA:i:0	MD:Z:27	NM:i:0	UG:i:278	BX:Z:ATTAT
+SRR2057595.10002219_ATCAG	16	chr19	5796783	255	34M	*	0	0	*	*	XA:i:0	MD:Z:34	NM:i:0	UG:i:234	BX:Z:ATCAG
+SRR2057595.10002597_AATTA	16	chr19	50733887	255	64M	*	0	0	*	*	XA:i:2	MD:Z:58C0C4	NM:i:2	UG:i:645	BX:Z:AATTA
+SRR2057595.10003084_GTCTA	16	chr19	4078420	255	67M	*	0	0	*	*	XA:i:2	MD:Z:2T19A44	NM:i:2	UG:i:124	BX:Z:GTCTA
+SRR2057595.10003230_ACATT	0	chr19	8799370	255	64M	*	0	0	*	*	XA:i:0	MD:Z:64	NM:i:0	UG:i:297	BX:Z:ACATT
+SRR2057595.10003317_CGGCC	16	chr19	52641725	255	20M	*	0	0	*	*	XA:i:2	MD:Z:1C13A4	NM:i:2	UG:i:648	BX:Z:CGGCC
+SRR2057595.10003567_ATGTC	0	chr19	37052811	255	64M	*	0	0	*	*	XA:i:1	MD:Z:11C52	NM:i:1	UG:i:542	BX:Z:ATGTC
+SRR2057595.10003576_AATCG	16	chr19	4078303	255	67M	*	0	0	*	*	XA:i:2	MD:Z:38A21A6	NM:i:2	UG:i:88	BX:Z:AATCG
+SRR2057595.10003630_GTGTT	16	chr19	4078298	255	52M	*	0	0	*	*	XA:i:2	MD:Z:42G0A8	NM:i:2	UG:i:45	BX:Z:GTGTT
+SRR2057595.10003869_TCTTG	16	chr19	4078423	255	67M	*	0	0	*	*	XA:i:1	MD:Z:19A47	NM:i:1	UG:i:111	BX:Z:TCTTG
+SRR2057595.1000404_AACTT	16	chr19	4078420	255	64M	*	0	0	*	*	XA:i:2	MD:Z:2T19A41	NM:i:2	UG:i:55	BX:Z:AACTT
+SRR2057595.10004161_TTCGC	16	chr19	4078428	255	67M	*	0	0	*	*	XA:i:2	MD:Z:14A24T27	NM:i:2	UG:i:74	BX:Z:TTCGC
+SRR2057595.1000475_TCTGG	0	chr19	13129234	255	28M	*	0	0	*	*	XA:i:1	MD:Z:22T5	NM:i:1	UG:i:383	BX:Z:TCTGG
+SRR2057595.10004845_GGATA	0	chr19	24394180	255	29M	*	0	0	*	*	XA:i:2	MD:Z:11C15T1	NM:i:2	UG:i:481	BX:Z:GGATA
+SRR2057595.10005100_TTAAA	16	chr19	4785463	255	21M	*	0	0	*	*	XA:i:0	MD:Z:21	NM:i:0	UG:i:196	BX:Z:TTAAA
+SRR2057595.10005761_CTAGA	16	chr19	4078299	255	50M	*	0	0	*	*	XA:i:2	MD:Z:41G0A7	NM:i:2	UG:i:43	BX:Z:CTAGA
+SRR2057595.10005808_CAGTA	16	chr19	7545872	255	24M	*	0	0	*	*	XA:i:0	MD:Z:24	NM:i:0	UG:i:276	BX:Z:CAGTA
+SRR2057595.10005955_GACAT	16	chr19	4078302	255	67M	*	0	0	*	*	XA:i:2	MD:Z:39A21A5	NM:i:2	UG:i:82	BX:Z:GACAT
+SRR2057595.10006011_TCTCA	16	chr19	4078298	255	50M	*	0	0	*	*	XA:i:1	MD:Z:43A6	NM:i:1	UG:i:36	BX:Z:TCTCA
+SRR2057595.10006546_GCTAC	16	chr19	4078446	255	67M	*	0	0	*	*	XA:i:0	MD:Z:67	NM:i:0	UG:i:97	BX:Z:GCTAC
+SRR2057595.1000663_ACGCA	16	chr19	51217013	255	67M	*	0	0	*	*	XA:i:2	MD:Z:3A46A16	NM:i:2	UG:i:647	BX:Z:ACGCA
+SRR2057595.10006870_GTCCA	16	chr19	4078431	255	67M	*	0	0	*	*	XA:i:1	MD:Z:11A55	NM:i:1	UG:i:107	BX:Z:GTCCA
+SRR2057595.10006926_GGATA	0	chr19	24394180	255	29M	*	0	0	*	*	XA:i:2	MD:Z:11C15T1	NM:i:2	UG:i:481	BX:Z:GGATA
+SRR2057595.10006986_GCGGA	16	chr19	4078298	255	48M	*	0	0	*	*	XA:i:1	MD:Z:43A4	NM:i:1	UG:i:19	BX:Z:GCGGA
+SRR2057595.10007554_TATTG	0	chr19	13129322	255	28M	*	0	0	*	*	XA:i:0	MD:Z:28	NM:i:0	UG:i:404	BX:Z:TATTG
+SRR2057595.10008217_GCTAT	0	chr19	57701750	255	67M	*	0	0	*	*	XA:i:2	MD:Z:34T1T30	NM:i:2	UG:i:677	BX:Z:GCTAT
+SRR2057595.10008433_AGAGT	16	chr19	24180225	255	55M	*	0	0	*	*	XA:i:1	MD:Z:41C13	NM:i:1	UG:i:474	BX:Z:AGAGT
+SRR2057595.10008484_GGATC	16	chr19	4078298	255	61M	*	0	0	*	*	XA:i:2	MD:Z:42G0A17	NM:i:2	UG:i:61	BX:Z:GGATC
+SRR2057595.10008523_TATGG	0	chr19	13129322	255	56M	*	0	0	*	*	XA:i:2	MD:Z:33C5A16	NM:i:2	UG:i:405	BX:Z:TATGG
+SRR2057595.10008761_AGCTG	16	chr19	4806926	255	39M	*	0	0	*	*	XA:i:0	MD:Z:39	NM:i:0	UG:i:201	BX:Z:AGCTG
+SRR2057595.10009130_CGGCC	16	chr19	52641725	255	20M	*	0	0	*	*	XA:i:2	MD:Z:1C13A4	NM:i:2	UG:i:648	BX:Z:CGGCC
+SRR2057595.10009213_CCCCG	16	chr19	4078298	255	38M	*	0	0	*	*	XA:i:1	MD:Z:35C2	NM:i:1	UG:i:184	BX:Z:CCCCG
+SRR2057595.10009394_TAGAT	16	chr19	5797239	255	48M	*	0	0	*	*	XA:i:0	MD:Z:48	NM:i:0	UG:i:229	BX:Z:TAGAT
+SRR2057595.10009607_TTGCA	0	chr19	41640185	255	61M	*	0	0	*	*	XA:i:0	MD:Z:61	NM:i:0	UG:i:581	BX:Z:TTGCA
+SRR2057595.1001008_TATCA	16	chr19	60837460	255	67M	*	0	0	*	*	XA:i:0	MD:Z:67	NM:i:0	UG:i:691	BX:Z:TATCA
+SRR2057595.10010444_AGTGC	0	chr19	8798525	255	27M	*	0	0	*	*	XA:i:0	MD:Z:27	NM:i:0	UG:i:296	BX:Z:AGTGC
+SRR2057595.10011106_CGGTC	16	chr19	28083193	255	60M	*	0	0	*	*	XA:i:0	MD:Z:60	NM:i:0	UG:i:497	BX:Z:CGGTC
+SRR2057595.10011603_ATGAA	0	chr19	56177103	255	20M	*	0	0	*	*	XA:i:2	MD:Z:12G0T6	NM:i:2	UG:i:667	BX:Z:ATGAA
+SRR2057595.10011612_GTTTC	0	chr19	58015463	255	56M	*	0	0	*	*	XA:i:0	MD:Z:56	NM:i:0	UG:i:683	BX:Z:GTTTC
+SRR2057595.10011924_CCCCG	16	chr19	4078298	255	38M	*	0	0	*	*	XA:i:0	MD:Z:38	NM:i:0	UG:i:184	BX:Z:CCCCG
+SRR2057595.10012143_ATGAA	0	chr19	56007800	255	67M	*	0	0	*	*	XA:i:0	MD:Z:67	NM:i:0	UG:i:666	BX:Z:ATGAA
+SRR2057595.10012487_TGGGT	16	chr19	4917801	255	27M	*	0	0	*	*	XA:i:0	MD:Z:27	NM:i:0	UG:i:202	BX:Z:TGGGT
+SRR2057595.1001256_TGATG	16	chr19	3544146	255	39M	*	0	0	*	*	XA:i:0	MD:Z:39	NM:i:0	UG:i:1	BX:Z:TGATG
+SRR2057595.10013018_GGGGC	16	chr19	4078446	255	67M	*	0	0	*	*	XA:i:1	MD:Z:66T0	NM:i:1	UG:i:98	BX:Z:GGGGC
+SRR2057595.10013156_GTCAA	16	chr19	4078298	255	57M	*	0	0	*	*	XA:i:1	MD:Z:43A13	NM:i:1	UG:i:52	BX:Z:GTCAA
+SRR2057595.10013642_AATTC	0	chr19	13129322	255	27M	*	0	0	*	*	XA:i:0	MD:Z:27	NM:i:0	UG:i:403	BX:Z:AATTC
+SRR2057595.10013703_ATGTA	0	chr19	39042685	255	39M	*	0	0	*	*	XA:i:0	MD:Z:39	NM:i:0	UG:i:558	BX:Z:ATGTA
+SRR2057595.10014121_ATACC	16	chr19	35673152	255	21M	*	0	0	*	*	XA:i:2	MD:Z:7T2A10	NM:i:2	UG:i:534	BX:Z:ATACC
+SRR2057595.1001419_CAGTA	16	chr19	7545872	255	24M	*	0	0	*	*	XA:i:0	MD:Z:24	NM:i:0	UG:i:276	BX:Z:CAGTA
+SRR2057595.10014588_AAGGT	0	chr19	8798514	255	39M	*	0	0	*	*	XA:i:0	MD:Z:39	NM:i:0	UG:i:294	BX:Z:AAGGT
+SRR2057595.10014904_GCGAC	0	chr19	13129553	255	26M	*	0	0	*	*	XA:i:2	MD:Z:3A0T21	NM:i:2	UG:i:399	BX:Z:GCGAC
+SRR2057595.10015153_ATTAT	16	chr19	7546213	255	27M	*	0	0	*	*	XA:i:0	MD:Z:27	NM:i:0	UG:i:278	BX:Z:ATTAT
+SRR2057595.10015867_ATCCG	16	chr19	37369602	255	35M	*	0	0	*	*	XA:i:0	MD:Z:35	NM:i:0	UG:i:544	BX:Z:ATCCG
+SRR2057595.10015949_CTTTC	16	chr19	4078298	255	53M	*	0	0	*	*	XA:i:2	MD:Z:42G0A9	NM:i:2	UG:i:47	BX:Z:CTTTC
+SRR2057595.10016080_TATCA	16	chr19	60837460	255	67M	*	0	0	*	*	XA:i:0	MD:Z:67	NM:i:0	UG:i:691	BX:Z:TATCA
+SRR2057595.10016534_ACGCA	16	chr19	51217013	255	67M	*	0	0	*	*	XA:i:2	MD:Z:3A46A16	NM:i:2	UG:i:647	BX:Z:ACGCA
+SRR2057595.10016692_TGGAC	16	chr19	4078420	255	67M	*	0	0	*	*	XA:i:2	MD:Z:2T19A44	NM:i:2	UG:i:127	BX:Z:TGGAC
+SRR2057595.10016737_GTTGT	16	chr19	12564367	255	21M	*	0	0	*	*	XA:i:2	MD:Z:0A12A7	NM:i:2	UG:i:380	BX:Z:GTTGT
+SRR2057595.10016874_TTGCA	0	chr19	44434953	255	43M	*	0	0	*	*	XA:i:0	MD:Z:43	NM:i:0	UG:i:602	BX:Z:TTGCA
+SRR2057595.10017358_AGATC	16	chr19	24352786	255	67M	*	0	0	*	*	XA:i:1	MD:Z:25C41	NM:i:1	UG:i:479	BX:Z:AGATC
+SRR2057595.10017433_GGCAG	0	chr19	13129322	255	22M	*	0	0	*	*	XA:i:0	MD:Z:22	NM:i:0	UG:i:409	BX:Z:GGCAG
+SRR2057595.10017742_TAGCG	0	chr19	25429456	255	20M	*	0	0	*	*	XA:i:2	MD:Z:5A9A4	NM:i:2	UG:i:485	BX:Z:TAGCG
+SRR2057595.10018091_TAACA	0	chr19	8799023	255	67M	*	0	0	*	*	XA:i:0	MD:Z:67	NM:i:0	UG:i:299	BX:Z:TAACA
+SRR2057595.10018143_CCATC	0	chr19	5008676	255	30M	*	0	0	*	*	XA:i:2	MD:Z:1A23G4	NM:i:2	UG:i:203	BX:Z:CCATC
+SRR2057595.10018237_GCTTG	16	chr19	5797471	255	50M	*	0	0	*	*	XA:i:0	MD:Z:50	NM:i:0	UG:i:226	BX:Z:GCTTG
+SRR2057595.10018343_AATTC	0	chr19	13129322	255	27M	*	0	0	*	*	XA:i:0	MD:Z:27	NM:i:0	UG:i:403	BX:Z:AATTC
+SRR2057595.10018510_TTCGT	0	chr19	47167097	255	67M	*	0	0	*	*	XA:i:0	MD:Z:67	NM:i:0	UG:i:623	BX:Z:TTCGT
+SRR2057595.10018668_GAGAG	16	chr19	4078298	255	50M	*	0	0	*	*	XA:i:1	MD:Z:43A6	NM:i:1	UG:i:35	BX:Z:GAGAG
+SRR2057595.10018780_CTAGA	16	chr19	4078299	255	50M	*	0	0	*	*	XA:i:2	MD:Z:41G0A7	NM:i:2	UG:i:43	BX:Z:CTAGA
+SRR2057595.10018930_TGATT	16	chr19	4078299	255	50M	*	0	0	*	*	XA:i:2	MD:Z:41G0A7	NM:i:2	UG:i:41	BX:Z:TGATT
+SRR2057595.10019300_TTATA	16	chr19	4078298	255	49M	*	0	0	*	*	XA:i:2	MD:Z:42G0A5	NM:i:2	UG:i:22	BX:Z:TTATA
+SRR2057595.10019327_TTATA	16	chr19	4078298	255	49M	*	0	0	*	*	XA:i:2	MD:Z:42G0A5	NM:i:2	UG:i:22	BX:Z:TTATA
+SRR2057595.10019367_AGTAT	0	chr19	10600420	255	29M	*	0	0	*	*	XA:i:0	MD:Z:29	NM:i:0	UG:i:328	BX:Z:AGTAT
+SRR2057595.10019428_CTAAT	0	chr19	40194243	255	44M	*	0	0	*	*	XA:i:2	MD:Z:5T20A17	NM:i:2	UG:i:562	BX:Z:CTAAT
+SRR2057595.10019544_CCCCG	16	chr19	4078298	255	38M	*	0	0	*	*	XA:i:0	MD:Z:38	NM:i:0	UG:i:184	BX:Z:CCCCG
+SRR2057595.100195_TTCGC	16	chr19	4078428	255	67M	*	0	0	*	*	XA:i:2	MD:Z:14A24T27	NM:i:2	UG:i:74	BX:Z:TTCGC
+SRR2057595.10019604_TCCAG	0	chr19	29662201	255	26M	*	0	0	*	*	XA:i:1	MD:Z:0C25	NM:i:1	UG:i:509	BX:Z:TCCAG
+SRR2057595.10019935_ACCGT	16	chr19	15980484	255	29M	*	0	0	*	*	XA:i:1	MD:Z:12C16	NM:i:1	UG:i:431	BX:Z:ACCGT
+SRR2057595.10020101_CTAGA	16	chr19	4078299	255	50M	*	0	0	*	*	XA:i:2	MD:Z:41G0A7	NM:i:2	UG:i:43	BX:Z:CTAGA
+SRR2057595.10020134_CTTTC	16	chr19	4078298	255	45M	*	0	0	*	*	XA:i:1	MD:Z:43A1	NM:i:1	UG:i:15	BX:Z:CTTTC
+SRR2057595.10020463_GTCCT	16	chr19	59694502	255	21M	*	0	0	*	*	XA:i:2	MD:Z:8T0A11	NM:i:2	UG:i:688	BX:Z:GTCCT
+SRR2057595.10020843_TTAAA	16	chr19	4785463	255	21M	*	0	0	*	*	XA:i:0	MD:Z:21	NM:i:0	UG:i:196	BX:Z:TTAAA
+SRR2057595.10020890_AGTAT	0	chr19	10600420	255	29M	*	0	0	*	*	XA:i:0	MD:Z:29	NM:i:0	UG:i:328	BX:Z:AGTAT
+SRR2057595.10021356_CAGTA	16	chr19	61240266	255	26M	*	0	0	*	*	XA:i:1	MD:Z:12C13	NM:i:1	UG:i:697	BX:Z:CAGTA
+SRR2057595.10021429_CACTG	16	chr19	5798673	255	42M	*	0	0	*	*	XA:i:0	MD:Z:42	NM:i:0	UG:i:249	BX:Z:CACTG
+SRR2057595.10021850_AGTCT	0	chr19	13129558	255	37M	*	0	0	*	*	XA:i:1	MD:Z:21A15	NM:i:1	UG:i:398	BX:Z:AGTCT
+SRR2057595.10022647_TTGTT	16	chr19	61240268	255	24M	*	0	0	*	*	XA:i:1	MD:Z:10C13	NM:i:1	UG:i:696	BX:Z:TTGTT
+SRR2057595.10022675_GTGGA	16	chr19	35902240	255	30M	*	0	0	*	*	XA:i:0	MD:Z:30	NM:i:0	UG:i:535	BX:Z:GTGGA
+SRR2057595.10023366_AGCTT	16	chr19	5799262	255	20M	*	0	0	*	*	XA:i:0	MD:Z:20	NM:i:0	UG:i:245	BX:Z:AGCTT
+SRR2057595.10023594_ATGAA	0	chr19	56007800	255	67M	*	0	0	*	*	XA:i:0	MD:Z:67	NM:i:0	UG:i:666	BX:Z:ATGAA
+SRR2057595.10023941_TACGG	16	chr19	4078296	255	67M	*	0	0	*	*	XA:i:2	MD:Z:1T43A21	NM:i:2	UG:i:71	BX:Z:TACGG
+SRR2057595.10023975_TCGTC	16	chr19	61240267	255	28M	*	0	0	*	*	XA:i:1	MD:Z:11C16	NM:i:1	UG:i:704	BX:Z:TCGTC
+SRR2057595.10024016_TTTTC	16	chr19	4078296	255	67M	*	0	0	*	*	XA:i:2	MD:Z:0T44A21	NM:i:2	UG:i:69	BX:Z:TTTTC
+SRR2057595.10024824_ACCGG	16	chr19	10924297	255	49M	*	0	0	*	*	XA:i:0	MD:Z:49	NM:i:0	UG:i:336	BX:Z:ACCGG
+SRR2057595.10025477_AGTAT	0	chr19	10600420	255	29M	*	0	0	*	*	XA:i:0	MD:Z:29	NM:i:0	UG:i:328	BX:Z:AGTAT
+SRR2057595.10025641_CGAAC	0	chr19	13129273	255	36M	*	0	0	*	*	XA:i:2	MD:Z:25C1T8	NM:i:2	UG:i:386	BX:Z:CGAAC
+SRR2057595.10025783_GCATA	16	chr19	4078298	255	57M	*	0	0	*	*	XA:i:2	MD:Z:42G0A13	NM:i:2	UG:i:53	BX:Z:GCATA
+SRR2057595.10025842_GATCT	16	chr19	4078433	255	67M	*	0	0	*	*	XA:i:1	MD:Z:9A57	NM:i:1	UG:i:90	BX:Z:GATCT
+SRR2057595.10026676_GGATC	16	chr19	4078298	255	61M	*	0	0	*	*	XA:i:2	MD:Z:42G0A17	NM:i:2	UG:i:61	BX:Z:GGATC
+SRR2057595.1002669_TATTC	16	chr19	5038295	255	24M	*	0	0	*	*	XA:i:0	MD:Z:24	NM:i:0	UG:i:206	BX:Z:TATTC
+SRR2057595.10027010_TGTTT	16	chr19	50526830	255	51M	*	0	0	*	*	XA:i:0	MD:Z:51	NM:i:0	UG:i:643	BX:Z:TGTTT
+SRR2057595.10027016_GACGT	0	chr19	40194275	255	30M	*	0	0	*	*	XA:i:0	MD:Z:30	NM:i:0	UG:i:565	BX:Z:GACGT
+SRR2057595.10027043_TATGG	0	chr19	13129322	255	56M	*	0	0	*	*	XA:i:2	MD:Z:33C5A16	NM:i:2	UG:i:405	BX:Z:TATGG
+SRR2057595.10027109_GGGGC	16	chr19	4078446	255	67M	*	0	0	*	*	XA:i:1	MD:Z:66T0	NM:i:1	UG:i:98	BX:Z:GGGGC
+SRR2057595.10027286_ATGAA	0	chr19	56177103	255	20M	*	0	0	*	*	XA:i:2	MD:Z:12G0T6	NM:i:2	UG:i:667	BX:Z:ATGAA
+SRR2057595.10027736_CCGAT	16	chr19	4078300	255	49M	*	0	0	*	*	XA:i:2	MD:Z:40G0A7	NM:i:2	UG:i:44	BX:Z:CCGAT
+SRR2057595.10027811_AAAGG	16	chr19	23347776	255	34M	*	0	0	*	*	XA:i:1	MD:Z:9T24	NM:i:1	UG:i:467	BX:Z:AAAGG
+SRR2057595.10028205_GCTAT	0	chr19	57701750	255	67M	*	0	0	*	*	XA:i:2	MD:Z:34T1T30	NM:i:2	UG:i:677	BX:Z:GCTAT
+SRR2057595.10028311_GCTAT	0	chr19	57701750	255	67M	*	0	0	*	*	XA:i:2	MD:Z:34T1T30	NM:i:2	UG:i:677	BX:Z:GCTAT
+SRR2057595.10029121_AGCCG	0	chr19	8799400	255	33M	*	0	0	*	*	XA:i:0	MD:Z:33	NM:i:0	UG:i:302	BX:Z:AGCCG
+SRR2057595.10029169_GGTTC	16	chr19	56896659	255	23M	*	0	0	*	*	XA:i:2	MD:Z:0C0A21	NM:i:2	UG:i:674	BX:Z:GGTTC
+SRR2057595.10029364_GCTAT	0	chr19	57701750	255	67M	*	0	0	*	*	XA:i:2	MD:Z:34T1T30	NM:i:2	UG:i:677	BX:Z:GCTAT
+SRR2057595.10029373_TTTTC	16	chr19	4078296	255	67M	*	0	0	*	*	XA:i:2	MD:Z:0T44A21	NM:i:2	UG:i:69	BX:Z:TTTTC
+SRR2057595.10029475_ACAAA	16	chr19	5688438	255	28M	*	0	0	*	*	XA:i:0	MD:Z:28	NM:i:0	UG:i:222	BX:Z:ACAAA
+SRR2057595.10029622_TCAGG	0	chr19	13129322	255	35M	*	0	0	*	*	XA:i:1	MD:Z:33C1	NM:i:1	UG:i:407	BX:Z:TCAGG
+SRR2057595.10029643_TATGG	0	chr19	13129322	255	56M	*	0	0	*	*	XA:i:2	MD:Z:33C5A16	NM:i:2	UG:i:405	BX:Z:TATGG
+SRR2057595.10030278_TATTG	0	chr19	13129322	255	28M	*	0	0	*	*	XA:i:0	MD:Z:28	NM:i:0	UG:i:404	BX:Z:TATTG
+SRR2057595.10030560_ATACC	16	chr19	35673152	255	21M	*	0	0	*	*	XA:i:2	MD:Z:7T2A10	NM:i:2	UG:i:534	BX:Z:ATACC
+SRR2057595.10030639_GCGAC	0	chr19	13129553	255	26M	*	0	0	*	*	XA:i:2	MD:Z:3A0T21	NM:i:2	UG:i:399	BX:Z:GCGAC
+SRR2057595.10031002_AAGGT	0	chr19	8798514	255	39M	*	0	0	*	*	XA:i:0	MD:Z:39	NM:i:0	UG:i:294	BX:Z:AAGGT
+SRR2057595.10031358_TAGTA	16	chr19	61240268	255	27M	*	0	0	*	*	XA:i:1	MD:Z:10C16	NM:i:1	UG:i:702	BX:Z:TAGTA
+SRR2057595.10031368_TAACA	16	chr19	4078298	255	50M	*	0	0	*	*	XA:i:2	MD:Z:42G0A6	NM:i:2	UG:i:32	BX:Z:TAACA
+SRR2057595.10032378_CAGCA	16	chr19	5801892	255	47M	*	0	0	*	*	XA:i:0	MD:Z:47	NM:i:0	UG:i:258	BX:Z:CAGCA
+SRR2057595.10032451_ACCGT	16	chr19	15980484	255	29M	*	0	0	*	*	XA:i:1	MD:Z:12C16	NM:i:1	UG:i:431	BX:Z:ACCGT
+SRR2057595.10032626_CATAA	0	chr19	13129322	255	35M	*	0	0	*	*	XA:i:1	MD:Z:33C1	NM:i:1	UG:i:401	BX:Z:CATAA
+SRR2057595.10033730_AACTG	16	chr19	40362914	255	38M	*	0	0	*	*	XA:i:0	MD:Z:38	NM:i:0	UG:i:571	BX:Z:AACTG
+SRR2057595.10034125_CTCTT	16	chr19	10761035	255	32M	*	0	0	*	*	XA:i:0	MD:Z:32	NM:i:0	UG:i:332	BX:Z:CTCTT
+SRR2057595.1003424_GGATA	0	chr19	24394180	255	29M	*	0	0	*	*	XA:i:2	MD:Z:11C15T1	NM:i:2	UG:i:481	BX:Z:GGATA
+SRR2057595.10034498_ATGAA	0	chr19	56177103	255	20M	*	0	0	*	*	XA:i:2	MD:Z:12G0T6	NM:i:2	UG:i:667	BX:Z:ATGAA
+SRR2057595.10034756_ATGAA	0	chr19	56007800	255	67M	*	0	0	*	*	XA:i:0	MD:Z:67	NM:i:0	UG:i:666	BX:Z:ATGAA
+SRR2057595.10034981_TTCGT	0	chr19	47167097	255	67M	*	0	0	*	*	XA:i:0	MD:Z:67	NM:i:0	UG:i:623	BX:Z:TTCGT
+SRR2057595.10035130_GGATG	0	chr19	13129322	255	27M	*	0	0	*	*	XA:i:0	MD:Z:27	NM:i:0	UG:i:402	BX:Z:GGATG
+SRR2057595.10035284_TACGT	0	chr19	40194308	255	34M	*	0	0	*	*	XA:i:1	MD:Z:3A30	NM:i:1	UG:i:563	BX:Z:TACGT
+SRR2057595.1003559_CCATA	0	chr19	13129322	255	30M	*	0	0	*	*	XA:i:0	MD:Z:30	NM:i:0	UG:i:408	BX:Z:CCATA
+SRR2057595.10035727_TTTTC	16	chr19	4078296	255	67M	*	0	0	*	*	XA:i:2	MD:Z:0T44A21	NM:i:2	UG:i:69	BX:Z:TTTTC
+SRR2057595.1003581_TAACA	16	chr19	4078298	255	50M	*	0	0	*	*	XA:i:2	MD:Z:42G0A6	NM:i:2	UG:i:32	BX:Z:TAACA
+SRR2057595.10036346_AGTCG	0	chr19	17767763	255	67M	*	0	0	*	*	XA:i:2	MD:Z:10A4A51	NM:i:2	UG:i:440	BX:Z:AGTCG
+SRR2057595.10036388_CCAAG	16	chr19	4078298	255	50M	*	0	0	*	*	XA:i:2	MD:Z:42G0A6	NM:i:2	UG:i:37	BX:Z:CCAAG
+SRR2057595.10037180_GGTAG	16	chr19	4078298	255	37M	*	0	0	*	*	XA:i:0	MD:Z:37	NM:i:0	UG:i:177	BX:Z:GGTAG
+SRR2057595.10037421_GCCGA	16	chr19	7389994	255	48M	*	0	0	*	*	XA:i:1	MD:Z:47C0	NM:i:1	UG:i:274	BX:Z:GCCGA
+SRR2057595.10037481_CATAA	0	chr19	13129322	255	35M	*	0	0	*	*	XA:i:1	MD:Z:33C1	NM:i:1	UG:i:401	BX:Z:CATAA
+SRR2057595.10037635_TTCGT	0	chr19	47167097	255	67M	*	0	0	*	*	XA:i:0	MD:Z:67	NM:i:0	UG:i:623	BX:Z:TTCGT
+SRR2057595.10037650_GATGA	0	chr19	48194137	255	59M	*	0	0	*	*	XA:i:0	MD:Z:59	NM:i:0	UG:i:635	BX:Z:GATGA
+SRR2057595.10037690_TCCCG	16	chr19	56004832	255	67M	*	0	0	*	*	XA:i:0	MD:Z:67	NM:i:0	UG:i:663	BX:Z:TCCCG
+SRR2057595.10038156_AAACA	16	chr19	4078299	255	49M	*	0	0	*	*	XA:i:1	MD:Z:42A6	NM:i:1	UG:i:33	BX:Z:AAACA
+SRR2057595.10038276_TAGTA	0	chr19	10274608	255	34M	*	0	0	*	*	XA:i:0	MD:Z:34	NM:i:0	UG:i:324	BX:Z:TAGTA
+SRR2057595.10038572_TGTTT	0	chr19	41595518	255	38M	*	0	0	*	*	XA:i:1	MD:Z:25G12	NM:i:1	UG:i:579	BX:Z:TGTTT
+SRR2057595.10038660_CAGAT	0	chr19	13129299	255	32M	*	0	0	*	*	XA:i:2	MD:Z:1T18G11	NM:i:2	UG:i:396	BX:Z:CAGAT
+SRR2057595.1003901_AGCCG	16	chr19	4078299	255	36M	*	0	0	*	*	XA:i:0	MD:Z:36	NM:i:0	UG:i:173	BX:Z:AGCCG
+SRR2057595.1003905_CCTCA	0	chr19	8798505	255	48M	*	0	0	*	*	XA:i:0	MD:Z:48	NM:i:0	UG:i:292	BX:Z:CCTCA
+SRR2057595.10039161_CTTAC	16	chr19	4078298	255	54M	*	0	0	*	*	XA:i:2	MD:Z:42G0A10	NM:i:2	UG:i:49	BX:Z:CTTAC
+SRR2057595.10039249_TCTGT	16	chr19	45885126	255	37M	*	0	0	*	*	XA:i:0	MD:Z:37	NM:i:0	UG:i:608	BX:Z:TCTGT
+SRR2057595.10039623_CGCCG	16	chr19	4078299	255	59M	*	0	0	*	*	XA:i:1	MD:Z:42A16	NM:i:1	UG:i:58	BX:Z:CGCCG
+SRR2057595.1004011_GTCGC	0	chr19	12080548	255	51M	*	0	0	*	*	XA:i:2	MD:Z:28C20G1	NM:i:2	UG:i:345	BX:Z:GTCGC
+SRR2057595.1004011_GTCGC	16	chr19	12084189	255	51M	*	0	0	*	*	XA:i:2	MD:Z:1C20G28	NM:i:2	UG:i:352	BX:Z:GTCGC
+SRR2057595.10040530_CCTTG	16	chr19	4078298	255	49M	*	0	0	*	*	XA:i:1	MD:Z:43A5	NM:i:1	UG:i:24	BX:Z:CCTTG
+SRR2057595.10041125_GACGC	16	chr19	32419974	255	67M	*	0	0	*	*	XA:i:0	MD:Z:67	NM:i:0	UG:i:514	BX:Z:GACGC
+SRR2057595.10041133_ACAGA	16	chr19	4078299	255	22M	*	0	0	*	*	XA:i:2	MD:Z:0C0C20	NM:i:2	UG:i:136	BX:Z:ACAGA
+SRR2057595.10041495_TGTTT	0	chr19	41595518	255	38M	*	0	0	*	*	XA:i:1	MD:Z:25G12	NM:i:1	UG:i:579	BX:Z:TGTTT
+SRR2057595.10041520_TGACA	16	chr19	51217013	255	43M	*	0	0	*	*	XA:i:2	MD:Z:3A1C37	NM:i:2	UG:i:646	BX:Z:TGACA
+SRR2057595.10041577_GTCAA	16	chr19	4078298	255	57M	*	0	0	*	*	XA:i:1	MD:Z:43A13	NM:i:1	UG:i:52	BX:Z:GTCAA
+SRR2057595.10041629_GATGA	0	chr19	48194137	255	59M	*	0	0	*	*	XA:i:0	MD:Z:59	NM:i:0	UG:i:635	BX:Z:GATGA
+SRR2057595.10041662_GGGGC	16	chr19	4078446	255	67M	*	0	0	*	*	XA:i:1	MD:Z:66T0	NM:i:1	UG:i:98	BX:Z:GGGGC
+SRR2057595.10042115_GACAT	16	chr19	4078302	255	67M	*	0	0	*	*	XA:i:2	MD:Z:39A21A5	NM:i:2	UG:i:82	BX:Z:GACAT
+SRR2057595.10042422_TCTGG	0	chr19	13129234	255	28M	*	0	0	*	*	XA:i:1	MD:Z:22T5	NM:i:1	UG:i:383	BX:Z:TCTGG
+SRR2057595.1004285_CCAAC	0	chr19	8820047	255	33M	*	0	0	*	*	XA:i:0	MD:Z:33	NM:i:0	UG:i:315	BX:Z:CCAAC
+SRR2057595.10042887_AAAGG	16	chr19	23347776	255	34M	*	0	0	*	*	XA:i:1	MD:Z:9T24	NM:i:1	UG:i:467	BX:Z:AAAGG
+SRR2057595.10043446_CAGAC	0	chr19	5493782	255	41M	*	0	0	*	*	XA:i:0	MD:Z:41	NM:i:0	UG:i:218	BX:Z:CAGAC
+SRR2057595.10043768_GGCGT	16	chr19	5797126	255	67M	*	0	0	*	*	XA:i:0	MD:Z:67	NM:i:0	UG:i:233	BX:Z:GGCGT
+SRR2057595.10043877_TGTTC	16	chr19	44470840	255	67M	*	0	0	*	*	XA:i:0	MD:Z:67	NM:i:0	UG:i:605	BX:Z:TGTTC
+SRR2057595.10043959_GACGT	0	chr19	40194275	255	30M	*	0	0	*	*	XA:i:0	MD:Z:30	NM:i:0	UG:i:565	BX:Z:GACGT
+SRR2057595.10044281_GCCGA	16	chr19	7389994	255	48M	*	0	0	*	*	XA:i:1	MD:Z:47C0	NM:i:1	UG:i:274	BX:Z:GCCGA
+SRR2057595.10044428_TCTAC	0	chr19	8798544	255	51M	*	0	0	*	*	XA:i:0	MD:Z:51	NM:i:0	UG:i:288	BX:Z:TCTAC
+SRR2057595.10044882_TTAAA	16	chr19	4785463	255	21M	*	0	0	*	*	XA:i:0	MD:Z:21	NM:i:0	UG:i:196	BX:Z:TTAAA
+SRR2057595.10044970_GTGGA	16	chr19	35902240	255	30M	*	0	0	*	*	XA:i:0	MD:Z:30	NM:i:0	UG:i:535	BX:Z:GTGGA
+SRR2057595.10045235_CGGCC	16	chr19	52641725	255	20M	*	0	0	*	*	XA:i:2	MD:Z:1C13A4	NM:i:2	UG:i:648	BX:Z:CGGCC
+SRR2057595.10045410_TGGTC	16	chr19	4078419	255	67M	*	0	0	*	*	XA:i:2	MD:Z:3T19A43	NM:i:2	UG:i:119	BX:Z:TGGTC
+SRR2057595.10045875_TTGGC	16	chr19	36085526	255	67M	*	0	0	*	*	XA:i:0	MD:Z:67	NM:i:0	UG:i:536	BX:Z:TTGGC
+SRR2057595.10045996_TAACA	16	chr19	4078298	255	50M	*	0	0	*	*	XA:i:2	MD:Z:42G0A6	NM:i:2	UG:i:32	BX:Z:TAACA
+SRR2057595.10046273_TCCAG	0	chr19	29662201	255	26M	*	0	0	*	*	XA:i:1	MD:Z:0C25	NM:i:1	UG:i:509	BX:Z:TCCAG
+SRR2057595.10047157_GTGGA	16	chr19	35902240	255	30M	*	0	0	*	*	XA:i:0	MD:Z:30	NM:i:0	UG:i:535	BX:Z:GTGGA
+SRR2057595.10047180_CCTCA	0	chr19	8798505	255	48M	*	0	0	*	*	XA:i:0	MD:Z:48	NM:i:0	UG:i:292	BX:Z:CCTCA
+SRR2057595.10047439_AATTA	16	chr19	50733890	255	61M	*	0	0	*	*	XA:i:2	MD:Z:55C0C4	NM:i:2	UG:i:645	BX:Z:AATTA
+SRR2057595.10047481_ACGCA	16	chr19	5796074	255	67M	*	0	0	*	*	XA:i:0	MD:Z:67	NM:i:0	UG:i:230	BX:Z:ACGCA
+SRR2057595.10047803_TTCGT	16	chr19	40658723	255	67M	*	0	0	*	*	XA:i:1	MD:Z:53T13	NM:i:1	UG:i:576	BX:Z:TTCGT
+SRR2057595.10047915_TCACA	0	chr19	13129273	255	45M	*	0	0	*	*	XA:i:2	MD:Z:25C1T17	NM:i:2	UG:i:388	BX:Z:TCACA
+SRR2057595.10048372_GTCCC	0	chr19	12347657	255	32M	*	0	0	*	*	XA:i:0	MD:Z:32	NM:i:0	UG:i:372	BX:Z:GTCCC
+SRR2057595.10048372_GTCCC	0	chr19	12348043	255	32M	*	0	0	*	*	XA:i:0	MD:Z:32	NM:i:0	UG:i:374	BX:Z:GTCCC
+SRR2057595.10048372_GTCCC	16	chr19	15035071	255	32M	*	0	0	*	*	XA:i:1	MD:Z:29T2	NM:i:1	UG:i:428	BX:Z:GTCCC
+SRR2057595.10048721_CTAAT	0	chr19	40194243	255	44M	*	0	0	*	*	XA:i:2	MD:Z:5T20A17	NM:i:2	UG:i:562	BX:Z:CTAAT
+SRR2057595.10048861_CTAGA	16	chr19	4078299	255	50M	*	0	0	*	*	XA:i:2	MD:Z:41G0A7	NM:i:2	UG:i:43	BX:Z:CTAGA
+SRR2057595.10048933_GTCGC	0	chr19	12080548	255	51M	*	0	0	*	*	XA:i:2	MD:Z:28C20G1	NM:i:2	UG:i:345	BX:Z:GTCGC
+SRR2057595.10048933_GTCGC	16	chr19	12084189	255	51M	*	0	0	*	*	XA:i:2	MD:Z:1C20G28	NM:i:2	UG:i:352	BX:Z:GTCGC
+SRR2057595.10049852_AAAGG	16	chr19	23347776	255	34M	*	0	0	*	*	XA:i:1	MD:Z:9T24	NM:i:1	UG:i:467	BX:Z:AAAGG
+SRR2057595.10049896_TTCGC	16	chr19	4078428	255	67M	*	0	0	*	*	XA:i:2	MD:Z:14A24T27	NM:i:2	UG:i:74	BX:Z:TTCGC
+SRR2057595.10050290_AAAGA	0	chr19	42921257	255	44M	*	0	0	*	*	XA:i:2	MD:Z:4G9G29	NM:i:2	UG:i:590	BX:Z:AAAGA
+SRR2057595.10050342_TGAAC	16	chr19	5798677	255	38M	*	0	0	*	*	XA:i:0	MD:Z:38	NM:i:0	UG:i:250	BX:Z:TGAAC
+SRR2057595.10050663_GACGT	0	chr19	40194275	255	30M	*	0	0	*	*	XA:i:0	MD:Z:30	NM:i:0	UG:i:565	BX:Z:GACGT
+SRR2057595.10051008_TTCGT	16	chr19	40658723	255	67M	*	0	0	*	*	XA:i:1	MD:Z:53T13	NM:i:1	UG:i:576	BX:Z:TTCGT
+SRR2057595.10051043_GCCGA	16	chr19	4078298	255	64M	*	0	0	*	*	XA:i:1	MD:Z:43A20	NM:i:1	UG:i:66	BX:Z:GCCGA
+SRR2057595.1005223_TTCGC	16	chr19	4078428	255	67M	*	0	0	*	*	XA:i:2	MD:Z:14A24T27	NM:i:2	UG:i:74	BX:Z:TTCGC
+SRR2057595.10052510_ATACG	0	chr19	13129421	255	31M	*	0	0	*	*	XA:i:1	MD:Z:11A19	NM:i:1	UG:i:393	BX:Z:ATACG
+SRR2057595.10052666_ATCCG	16	chr19	37369602	255	35M	*	0	0	*	*	XA:i:0	MD:Z:35	NM:i:0	UG:i:544	BX:Z:ATCCG
+SRR2057595.10053188_CTTTC	16	chr19	4078298	255	45M	*	0	0	*	*	XA:i:1	MD:Z:43A1	NM:i:1	UG:i:15	BX:Z:CTTTC
+SRR2057595.10053341_TTGCA	0	chr19	41640185	255	61M	*	0	0	*	*	XA:i:0	MD:Z:61	NM:i:0	UG:i:581	BX:Z:TTGCA
+SRR2057595.10053375_ATGAA	0	chr19	56007800	255	67M	*	0	0	*	*	XA:i:0	MD:Z:67	NM:i:0	UG:i:666	BX:Z:ATGAA
+SRR2057595.10053481_CTCCG	0	chr19	11195966	255	44M	*	0	0	*	*	XA:i:1	MD:Z:0T43	NM:i:1	UG:i:338	BX:Z:CTCCG
+SRR2057595.10053518_AATCG	16	chr19	4078303	255	67M	*	0	0	*	*	XA:i:2	MD:Z:38A21A6	NM:i:2	UG:i:88	BX:Z:AATCG
+SRR2057595.1005354_GAGAG	16	chr19	4078298	255	50M	*	0	0	*	*	XA:i:1	MD:Z:43A6	NM:i:1	UG:i:35	BX:Z:GAGAG
+SRR2057595.1005379_CCAAC	0	chr19	8820047	255	33M	*	0	0	*	*	XA:i:0	MD:Z:33	NM:i:0	UG:i:315	BX:Z:CCAAC
+SRR2057595.10053918_AGTAT	0	chr19	10600420	255	29M	*	0	0	*	*	XA:i:0	MD:Z:29	NM:i:0	UG:i:328	BX:Z:AGTAT
+SRR2057595.10053970_TATGG	0	chr19	13129322	255	56M	*	0	0	*	*	XA:i:2	MD:Z:33C5A16	NM:i:2	UG:i:405	BX:Z:TATGG
+SRR2057595.10054046_ATAAA	16	chr19	4078298	255	37M	*	0	0	*	*	XA:i:0	MD:Z:37	NM:i:0	UG:i:175	BX:Z:ATAAA
+SRR2057595.10054497_AAAGA	0	chr19	42921257	255	44M	*	0	0	*	*	XA:i:2	MD:Z:4G9G29	NM:i:2	UG:i:590	BX:Z:AAAGA
+SRR2057595.10055409_TAGAC	0	chr19	23806079	255	67M	*	0	0	*	*	XA:i:1	MD:Z:41T25	NM:i:1	UG:i:468	BX:Z:TAGAC
+SRR2057595.10055838_CAGAC	0	chr19	5493782	255	41M	*	0	0	*	*	XA:i:0	MD:Z:41	NM:i:0	UG:i:218	BX:Z:CAGAC
+SRR2057595.10055912_TCTCA	16	chr19	4078298	255	50M	*	0	0	*	*	XA:i:1	MD:Z:43A6	NM:i:1	UG:i:36	BX:Z:TCTCA
+SRR2057595.10055955_AGGAT	16	chr19	4078296	255	67M	*	0	0	*	*	XA:i:2	MD:Z:0T44A21	NM:i:2	UG:i:70	BX:Z:AGGAT
+SRR2057595.10056203_TGCAA	16	chr19	61240267	255	28M	*	0	0	*	*	XA:i:1	MD:Z:11C16	NM:i:1	UG:i:703	BX:Z:TGCAA
+SRR2057595.10056249_TCAGG	0	chr19	13129322	255	35M	*	0	0	*	*	XA:i:1	MD:Z:33C1	NM:i:1	UG:i:407	BX:Z:TCAGG
+SRR2057595.10057756_CGAAC	0	chr19	13129273	255	36M	*	0	0	*	*	XA:i:2	MD:Z:25C1T8	NM:i:2	UG:i:386	BX:Z:CGAAC
+SRR2057595.10058241_TTAAA	16	chr19	4785463	255	21M	*	0	0	*	*	XA:i:0	MD:Z:21	NM:i:0	UG:i:196	BX:Z:TTAAA
+SRR2057595.10058572_TCTTA	16	chr19	61240267	255	28M	*	0	0	*	*	XA:i:1	MD:Z:11C16	NM:i:1	UG:i:705	BX:Z:TCTTA
+SRR2057595.10058802_TAGTA	0	chr19	10274608	255	34M	*	0	0	*	*	XA:i:1	MD:Z:9C24	NM:i:1	UG:i:324	BX:Z:TAGTA
+SRR2057595.10058946_AGCCA	0	chr19	43786861	255	67M	*	0	0	*	*	XA:i:0	MD:Z:67	NM:i:0	UG:i:594	BX:Z:AGCCA
+SRR2057595.10059254_GGTTC	16	chr19	56896659	255	23M	*	0	0	*	*	XA:i:2	MD:Z:0C0A21	NM:i:2	UG:i:674	BX:Z:GGTTC
+SRR2057595.10059642_CTAGC	16	chr19	4078298	255	62M	*	0	0	*	*	XA:i:1	MD:Z:43A18	NM:i:1	UG:i:63	BX:Z:CTAGC
+SRR2057595.10060193_ATAGA	0	chr19	38795805	255	62M	*	0	0	*	*	XA:i:2	MD:Z:44C1A15	NM:i:2	UG:i:553	BX:Z:ATAGA
+SRR2057595.10060270_ATGGT	16	chr19	12086074	255	45M	*	0	0	*	*	XA:i:1	MD:Z:19T25	NM:i:1	UG:i:361	BX:Z:ATGGT
+SRR2057595.10060437_TATAT	0	chr19	40194298	255	25M	*	0	0	*	*	XA:i:1	MD:Z:13A11	NM:i:1	UG:i:567	BX:Z:TATAT
+SRR2057595.10060447_CTTAC	16	chr19	4078298	255	54M	*	0	0	*	*	XA:i:2	MD:Z:42G0A10	NM:i:2	UG:i:49	BX:Z:CTTAC
+SRR2057595.10060568_GACGC	16	chr19	32419974	255	67M	*	0	0	*	*	XA:i:0	MD:Z:67	NM:i:0	UG:i:514	BX:Z:GACGC
+SRR2057595.10060757_AGCCG	16	chr19	4078299	255	38M	*	0	0	*	*	XA:i:0	MD:Z:38	NM:i:0	UG:i:11	BX:Z:AGCCG
+SRR2057595.10060776_TCTTG	16	chr19	4078423	255	67M	*	0	0	*	*	XA:i:1	MD:Z:19A47	NM:i:1	UG:i:111	BX:Z:TCTTG
+SRR2057595.10061005_AGCCG	16	chr19	4078299	255	36M	*	0	0	*	*	XA:i:0	MD:Z:36	NM:i:0	UG:i:173	BX:Z:AGCCG
+SRR2057595.10061018_CACTG	16	chr19	5798673	255	42M	*	0	0	*	*	XA:i:0	MD:Z:42	NM:i:0	UG:i:249	BX:Z:CACTG
+SRR2057595.10061192_ATCCG	16	chr19	37369602	255	35M	*	0	0	*	*	XA:i:0	MD:Z:35	NM:i:0	UG:i:544	BX:Z:ATCCG
+SRR2057595.10061371_GCCTG	16	chr19	4078301	255	67M	*	0	0	*	*	XA:i:2	MD:Z:40A21A4	NM:i:2	UG:i:75	BX:Z:GCCTG
+SRR2057595.10061403_AAGTA	16	chr19	31326011	255	57M	*	0	0	*	*	XA:i:1	MD:Z:23A33	NM:i:1	UG:i:512	BX:Z:AAGTA
+SRR2057595.10061424_GCTAC	16	chr19	4078446	255	67M	*	0	0	*	*	XA:i:0	MD:Z:67	NM:i:0	UG:i:97	BX:Z:GCTAC
+SRR2057595.10061535_ATCAA	0	chr19	20547357	255	23M	*	0	0	*	*	XA:i:0	MD:Z:23	NM:i:0	UG:i:452	BX:Z:ATCAA
+SRR2057595.10061661_ACAAA	16	chr19	5688438	255	28M	*	0	0	*	*	XA:i:0	MD:Z:28	NM:i:0	UG:i:222	BX:Z:ACAAA
+SRR2057595.10061745_ATATA	0	chr19	13129330	255	22M	*	0	0	*	*	XA:i:1	MD:Z:0T21	NM:i:1	UG:i:422	BX:Z:ATATA
+SRR2057595.10062673_ATACC	16	chr19	35673152	255	21M	*	0	0	*	*	XA:i:2	MD:Z:7T2A10	NM:i:2	UG:i:534	BX:Z:ATACC
+SRR2057595.10062948_TTTTC	16	chr19	4078296	255	67M	*	0	0	*	*	XA:i:2	MD:Z:0T44A21	NM:i:2	UG:i:69	BX:Z:TTTTC
+SRR2057595.10063079_GTCTA	16	chr19	4078420	255	67M	*	0	0	*	*	XA:i:2	MD:Z:2T19A44	NM:i:2	UG:i:124	BX:Z:GTCTA
+SRR2057595.10063521_AGATG	16	chr19	61240273	255	22M	*	0	0	*	*	XA:i:1	MD:Z:5C16	NM:i:1	UG:i:707	BX:Z:AGATG
+SRR2057595.10064036_CAGCA	16	chr19	5801892	255	47M	*	0	0	*	*	XA:i:0	MD:Z:47	NM:i:0	UG:i:258	BX:Z:CAGCA
+SRR2057595.1006417_GATCA	16	chr19	4078298	255	50M	*	0	0	*	*	XA:i:2	MD:Z:42G0A6	NM:i:2	UG:i:34	BX:Z:GATCA
+SRR2057595.10065256_AGGGG	0	chr19	13129331	255	37M	*	0	0	*	*	XA:i:2	MD:Z:24C5A6	NM:i:2	UG:i:423	BX:Z:AGGGG
+SRR2057595.10065460_ATGGT	0	chr19	8798504	255	50M	*	0	0	*	*	XA:i:0	MD:Z:50	NM:i:0	UG:i:291	BX:Z:ATGGT
+SRR2057595.10065656_GATGA	0	chr19	48194137	255	59M	*	0	0	*	*	XA:i:0	MD:Z:59	NM:i:0	UG:i:635	BX:Z:GATGA
+SRR2057595.10065671_ATGAT	16	chr19	61240306	255	36M	*	0	0	*	*	XA:i:2	MD:Z:16A4T14	NM:i:2	UG:i:716	BX:Z:ATGAT
+SRR2057595.10065713_ATGTC	0	chr19	37052811	255	64M	*	0	0	*	*	XA:i:1	MD:Z:11C52	NM:i:1	UG:i:542	BX:Z:ATGTC
+SRR2057595.10065896_GCTAT	0	chr19	57701750	255	67M	*	0	0	*	*	XA:i:2	MD:Z:34T1T30	NM:i:2	UG:i:677	BX:Z:GCTAT
+SRR2057595.10066051_AACTT	16	chr19	4078420	255	64M	*	0	0	*	*	XA:i:2	MD:Z:2T19A41	NM:i:2	UG:i:55	BX:Z:AACTT
+SRR2057595.10066334_AGCCA	0	chr19	47324044	255	46M	*	0	0	*	*	XA:i:0	MD:Z:46	NM:i:0	UG:i:627	BX:Z:AGCCA
+SRR2057595.10066646_GGTTC	16	chr19	56896659	255	23M	*	0	0	*	*	XA:i:2	MD:Z:0C0A21	NM:i:2	UG:i:674	BX:Z:GGTTC
+SRR2057595.10066775_GTCAA	16	chr19	4078298	255	57M	*	0	0	*	*	XA:i:1	MD:Z:43A13	NM:i:1	UG:i:52	BX:Z:GTCAA
+SRR2057595.10066849_GGTCG	0	chr19	53686815	255	67M	*	0	0	*	*	XA:i:0	MD:Z:67	NM:i:0	UG:i:651	BX:Z:GGTCG
+SRR2057595.10066970_TAACA	16	chr19	4078298	255	50M	*	0	0	*	*	XA:i:2	MD:Z:42G0A6	NM:i:2	UG:i:32	BX:Z:TAACA
+SRR2057595.10067118_TGATT	16	chr19	4078299	255	50M	*	0	0	*	*	XA:i:2	MD:Z:41G0A7	NM:i:2	UG:i:41	BX:Z:TGATT
+SRR2057595.10067277_TAGAC	0	chr19	23806079	255	67M	*	0	0	*	*	XA:i:1	MD:Z:41T25	NM:i:1	UG:i:468	BX:Z:TAGAC
+SRR2057595.10067458_TACGG	16	chr19	4078296	255	67M	*	0	0	*	*	XA:i:2	MD:Z:1T43A21	NM:i:2	UG:i:71	BX:Z:TACGG
+SRR2057595.10067669_GCTTG	16	chr19	5797471	255	50M	*	0	0	*	*	XA:i:0	MD:Z:50	NM:i:0	UG:i:226	BX:Z:GCTTG
+SRR2057595.10067834_GACGT	0	chr19	40194275	255	30M	*	0	0	*	*	XA:i:0	MD:Z:30	NM:i:0	UG:i:565	BX:Z:GACGT
+SRR2057595.1006784_GTCCA	16	chr19	4078431	255	67M	*	0	0	*	*	XA:i:1	MD:Z:11A55	NM:i:1	UG:i:107	BX:Z:GTCCA
+SRR2057595.10067875_GCCGA	16	chr19	4078298	255	64M	*	0	0	*	*	XA:i:1	MD:Z:43A20	NM:i:1	UG:i:66	BX:Z:GCCGA
+SRR2057595.1006816_GATCA	16	chr19	4078298	255	50M	*	0	0	*	*	XA:i:2	MD:Z:42G0A6	NM:i:2	UG:i:34	BX:Z:GATCA
+SRR2057595.10068282_TAACA	0	chr19	8799023	255	67M	*	0	0	*	*	XA:i:0	MD:Z:67	NM:i:0	UG:i:299	BX:Z:TAACA
+SRR2057595.1006840_TTAAA	16	chr19	4785463	255	21M	*	0	0	*	*	XA:i:0	MD:Z:21	NM:i:0	UG:i:196	BX:Z:TTAAA
+SRR2057595.10068743_TTGGC	16	chr19	36085526	255	67M	*	0	0	*	*	XA:i:0	MD:Z:67	NM:i:0	UG:i:536	BX:Z:TTGGC
+SRR2057595.10068873_CTTTT	0	chr19	56656380	255	54M	*	0	0	*	*	XA:i:0	MD:Z:54	NM:i:0	UG:i:669	BX:Z:CTTTT
+SRR2057595.10068999_AAGTA	16	chr19	31326011	255	57M	*	0	0	*	*	XA:i:1	MD:Z:23A33	NM:i:1	UG:i:512	BX:Z:AAGTA
+SRR2057595.10069428_AACGC	16	chr19	4078298	255	51M	*	0	0	*	*	XA:i:1	MD:Z:43A7	NM:i:1	UG:i:42	BX:Z:AACGC
+SRR2057595.10070094_TCTTA	16	chr19	61240267	255	28M	*	0	0	*	*	XA:i:1	MD:Z:11C16	NM:i:1	UG:i:705	BX:Z:TCTTA
+SRR2057595.10070448_GGATC	16	chr19	4078298	255	61M	*	0	0	*	*	XA:i:2	MD:Z:42G0A17	NM:i:2	UG:i:61	BX:Z:GGATC
+SRR2057595.1007050_TATAC	0	chr19	8799026	255	60M	*	0	0	*	*	XA:i:0	MD:Z:60	NM:i:0	UG:i:301	BX:Z:TATAC
+SRR2057595.10070871_GAAGT	16	chr19	27988575	255	52M	*	0	0	*	*	XA:i:0	MD:Z:52	NM:i:0	UG:i:494	BX:Z:GAAGT
+SRR2057595.10071095_TGCAA	16	chr19	61240267	255	28M	*	0	0	*	*	XA:i:1	MD:Z:11C16	NM:i:1	UG:i:703	BX:Z:TGCAA
+SRR2057595.10071228_CTAGC	16	chr19	4078298	255	62M	*	0	0	*	*	XA:i:1	MD:Z:43A18	NM:i:1	UG:i:63	BX:Z:CTAGC
+SRR2057595.10071424_CATTT	0	chr19	49059158	255	49M	*	0	0	*	*	XA:i:2	MD:Z:30A7A10	NM:i:2	UG:i:639	BX:Z:CATTT
+SRR2057595.10071487_CACTG	16	chr19	5798673	255	42M	*	0	0	*	*	XA:i:0	MD:Z:42	NM:i:0	UG:i:249	BX:Z:CACTG
+SRR2057595.10072063_CAGCA	16	chr19	5801892	255	47M	*	0	0	*	*	XA:i:0	MD:Z:47	NM:i:0	UG:i:258	BX:Z:CAGCA
+SRR2057595.10072068_GCCGA	16	chr19	4078298	255	64M	*	0	0	*	*	XA:i:1	MD:Z:43A20	NM:i:1	UG:i:66	BX:Z:GCCGA
+SRR2057595.10072172_TCTGC	16	chr19	4078299	255	36M	*	0	0	*	*	XA:i:0	MD:Z:36	NM:i:0	UG:i:178	BX:Z:TCTGC
+SRR2057595.10072478_AGCTT	16	chr19	5799262	255	20M	*	0	0	*	*	XA:i:0	MD:Z:20	NM:i:0	UG:i:245	BX:Z:AGCTT
+SRR2057595.10072601_TTGGC	16	chr19	4078302	255	67M	*	0	0	*	*	XA:i:2	MD:Z:39A21A5	NM:i:2	UG:i:79	BX:Z:TTGGC
+SRR2057595.10072627_AATAC	0	chr19	12046308	255	33M	*	0	0	*	*	XA:i:1	MD:Z:23A9	NM:i:1	UG:i:343	BX:Z:AATAC
+SRR2057595.10072909_TCCAG	0	chr19	29662201	255	26M	*	0	0	*	*	XA:i:1	MD:Z:0C25	NM:i:1	UG:i:509	BX:Z:TCCAG
+SRR2057595.10072922_TGATT	16	chr19	4078299	255	50M	*	0	0	*	*	XA:i:2	MD:Z:41G0A7	NM:i:2	UG:i:41	BX:Z:TGATT
+SRR2057595.10072936_TAGTA	16	chr19	61240268	255	27M	*	0	0	*	*	XA:i:1	MD:Z:10C16	NM:i:1	UG:i:702	BX:Z:TAGTA
+SRR2057595.10073020_TGTTT	0	chr19	41595518	255	38M	*	0	0	*	*	XA:i:1	MD:Z:25G12	NM:i:1	UG:i:579	BX:Z:TGTTT
+SRR2057595.10073067_CGTCT	0	chr19	13129329	255	35M	*	0	0	*	*	XA:i:2	MD:Z:26C5A2	NM:i:2	UG:i:421	BX:Z:CGTCT
+SRR2057595.10073092_TTTTC	16	chr19	4078296	255	67M	*	0	0	*	*	XA:i:2	MD:Z:0T44A21	NM:i:2	UG:i:69	BX:Z:TTTTC
+SRR2057595.1007313_ACATT	0	chr19	8799370	255	64M	*	0	0	*	*	XA:i:0	MD:Z:64	NM:i:0	UG:i:297	BX:Z:ACATT
+SRR2057595.10073348_CCTTG	16	chr19	4078298	255	49M	*	0	0	*	*	XA:i:1	MD:Z:43A5	NM:i:1	UG:i:24	BX:Z:CCTTG
+SRR2057595.10073515_GGATC	16	chr19	4078298	255	61M	*	0	0	*	*	XA:i:2	MD:Z:42G0A17	NM:i:2	UG:i:61	BX:Z:GGATC
+SRR2057595.10073784_TGATG	16	chr19	3544146	255	39M	*	0	0	*	*	XA:i:0	MD:Z:39	NM:i:0	UG:i:1	BX:Z:TGATG
+SRR2057595.10073896_TTCGT	0	chr19	36922761	255	57M	*	0	0	*	*	XA:i:1	MD:Z:5C51	NM:i:1	UG:i:538	BX:Z:TTCGT
+SRR2057595.10073986_ATCTC	0	chr19	21910875	255	27M	*	0	0	*	*	XA:i:0	MD:Z:27	NM:i:0	UG:i:458	BX:Z:ATCTC
+SRR2057595.10074218_AGTGC	0	chr19	8798525	255	27M	*	0	0	*	*	XA:i:0	MD:Z:27	NM:i:0	UG:i:296	BX:Z:AGTGC
+SRR2057595.10074241_AAACA	16	chr19	4078299	255	49M	*	0	0	*	*	XA:i:1	MD:Z:42A6	NM:i:1	UG:i:33	BX:Z:AAACA
+SRR2057595.10074267_GCTAC	0	chr19	13129281	255	31M	*	0	0	*	*	XA:i:2	MD:Z:17C1T11	NM:i:2	UG:i:391	BX:Z:GCTAC
+SRR2057595.10074447_ATTAT	16	chr19	7546213	255	27M	*	0	0	*	*	XA:i:0	MD:Z:27	NM:i:0	UG:i:278	BX:Z:ATTAT
+SRR2057595.10074845_GTTGT	16	chr19	12564367	255	21M	*	0	0	*	*	XA:i:2	MD:Z:0A12A7	NM:i:2	UG:i:380	BX:Z:GTTGT
+SRR2057595.10075349_ATGAT	16	chr19	61240306	255	36M	*	0	0	*	*	XA:i:2	MD:Z:16A4T14	NM:i:2	UG:i:716	BX:Z:ATGAT
+SRR2057595.10075433_GGGGC	16	chr19	4078446	255	67M	*	0	0	*	*	XA:i:1	MD:Z:66T0	NM:i:1	UG:i:98	BX:Z:GGGGC
+SRR2057595.10075536_GCATA	16	chr19	4078298	255	57M	*	0	0	*	*	XA:i:2	MD:Z:42G0A13	NM:i:2	UG:i:53	BX:Z:GCATA
+SRR2057595.10075745_GTATT	0	chr19	47323072	255	47M	*	0	0	*	*	XA:i:1	MD:Z:0C46	NM:i:1	UG:i:628	BX:Z:GTATT
+SRR2057595.10075769_ATTAT	16	chr19	7546213	255	27M	*	0	0	*	*	XA:i:0	MD:Z:27	NM:i:0	UG:i:278	BX:Z:ATTAT
+SRR2057595.10075776_GCTAC	16	chr19	4078446	255	67M	*	0	0	*	*	XA:i:0	MD:Z:67	NM:i:0	UG:i:97	BX:Z:GCTAC
+SRR2057595.10075922_AATAC	0	chr19	12046308	255	33M	*	0	0	*	*	XA:i:1	MD:Z:23A9	NM:i:1	UG:i:343	BX:Z:AATAC
+SRR2057595.10075965_GCATA	16	chr19	4078298	255	57M	*	0	0	*	*	XA:i:2	MD:Z:42G0A13	NM:i:2	UG:i:53	BX:Z:GCATA
+SRR2057595.10076063_AAATC	16	chr19	47891298	255	21M	*	0	0	*	*	XA:i:2	MD:Z:4C11C4	NM:i:2	UG:i:633	BX:Z:AAATC
+SRR2057595.10076706_TTGCA	0	chr19	44434953	255	43M	*	0	0	*	*	XA:i:0	MD:Z:43	NM:i:0	UG:i:602	BX:Z:TTGCA
+SRR2057595.1007711_TCCAG	0	chr19	29662201	255	26M	*	0	0	*	*	XA:i:1	MD:Z:0C25	NM:i:1	UG:i:509	BX:Z:TCCAG
+SRR2057595.10077136_ATGTC	0	chr19	37052811	255	64M	*	0	0	*	*	XA:i:1	MD:Z:11C52	NM:i:1	UG:i:542	BX:Z:ATGTC
+SRR2057595.10077390_GATCA	16	chr19	4078298	255	50M	*	0	0	*	*	XA:i:2	MD:Z:42G0A6	NM:i:2	UG:i:34	BX:Z:GATCA
+SRR2057595.10077550_GATCA	16	chr19	4078298	255	50M	*	0	0	*	*	XA:i:2	MD:Z:42G0A6	NM:i:2	UG:i:34	BX:Z:GATCA
+SRR2057595.10078118_AGCGC	16	chr19	27464368	255	52M	*	0	0	*	*	XA:i:0	MD:Z:52	NM:i:0	UG:i:493	BX:Z:AGCGC
+SRR2057595.10078219_GCATA	16	chr19	4078298	255	57M	*	0	0	*	*	XA:i:2	MD:Z:42G0A13	NM:i:2	UG:i:53	BX:Z:GCATA
+SRR2057595.10078231_ATGAT	16	chr19	61240306	255	36M	*	0	0	*	*	XA:i:2	MD:Z:16A4T14	NM:i:2	UG:i:716	BX:Z:ATGAT
+SRR2057595.10078601_AATGC	0	chr19	8798773	255	42M	*	0	0	*	*	XA:i:0	MD:Z:42	NM:i:0	UG:i:306	BX:Z:AATGC
+SRR2057595.10079068_TTGGC	16	chr19	4078302	255	67M	*	0	0	*	*	XA:i:2	MD:Z:39A21A5	NM:i:2	UG:i:79	BX:Z:TTGGC
+SRR2057595.10079368_GAGTG	0	chr19	8798502	255	51M	*	0	0	*	*	XA:i:0	MD:Z:51	NM:i:0	UG:i:289	BX:Z:GAGTG
+SRR2057595.10079546_CGGCC	16	chr19	52641725	255	20M	*	0	0	*	*	XA:i:2	MD:Z:1C13A4	NM:i:2	UG:i:648	BX:Z:CGGCC
+SRR2057595.10079549_TCTTA	16	chr19	61240267	255	28M	*	0	0	*	*	XA:i:1	MD:Z:11C16	NM:i:1	UG:i:705	BX:Z:TCTTA
+SRR2057595.10079658_CGAAC	0	chr19	13129273	255	36M	*	0	0	*	*	XA:i:2	MD:Z:25C1T8	NM:i:2	UG:i:386	BX:Z:CGAAC
+SRR2057595.10080019_TATGG	0	chr19	13129322	255	56M	*	0	0	*	*	XA:i:2	MD:Z:33C5A16	NM:i:2	UG:i:405	BX:Z:TATGG
+SRR2057595.10080347_GCAGA	0	chr19	8799844	255	53M	*	0	0	*	*	XA:i:0	MD:Z:53	NM:i:0	UG:i:309	BX:Z:GCAGA
+SRR2057595.10080699_TTTTC	16	chr19	4078296	255	67M	*	0	0	*	*	XA:i:2	MD:Z:0T44A21	NM:i:2	UG:i:69	BX:Z:TTTTC
+SRR2057595.10080920_GCTAT	16	chr19	61240267	255	28M	*	0	0	*	*	XA:i:1	MD:Z:11C16	NM:i:1	UG:i:706	BX:Z:GCTAT
+SRR2057595.10080946_TATAT	0	chr19	40194298	255	25M	*	0	0	*	*	XA:i:1	MD:Z:13A11	NM:i:1	UG:i:567	BX:Z:TATAT
+SRR2057595.10081070_CGCCG	16	chr19	4078299	255	59M	*	0	0	*	*	XA:i:1	MD:Z:42A16	NM:i:1	UG:i:58	BX:Z:CGCCG
+SRR2057595.10081274_AACGC	16	chr19	4078298	255	51M	*	0	0	*	*	XA:i:1	MD:Z:43A7	NM:i:1	UG:i:42	BX:Z:AACGC
+SRR2057595.10081914_AATAC	16	chr19	4078420	255	67M	*	0	0	*	*	XA:i:2	MD:Z:2T19A44	NM:i:2	UG:i:125	BX:Z:AATAC
+SRR2057595.10082001_TCTTG	16	chr19	61240267	255	28M	*	0	0	*	*	XA:i:1	MD:Z:11C16	NM:i:1	UG:i:705	BX:Z:TCTTA
+SRR2057595.1008200_TTCGC	16	chr19	4078428	255	67M	*	0	0	*	*	XA:i:2	MD:Z:14A24T27	NM:i:2	UG:i:74	BX:Z:TTCGC
+SRR2057595.1008230_GCTAT	0	chr19	57701750	255	67M	*	0	0	*	*	XA:i:2	MD:Z:34T1T30	NM:i:2	UG:i:677	BX:Z:GCTAT
+SRR2057595.10082591_ACAGA	16	chr19	4078299	255	22M	*	0	0	*	*	XA:i:2	MD:Z:0C0C20	NM:i:2	UG:i:136	BX:Z:ACAGA
+SRR2057595.10082733_CCTTT	16	chr19	4078298	255	37M	*	0	0	*	*	XA:i:0	MD:Z:37	NM:i:0	UG:i:180	BX:Z:CCTTT
+SRR2057595.1008274_ATCAA	0	chr19	20547357	255	23M	*	0	0	*	*	XA:i:0	MD:Z:23	NM:i:0	UG:i:452	BX:Z:ATCAA
+SRR2057595.100827_ACAGA	16	chr19	4078299	255	22M	*	0	0	*	*	XA:i:2	MD:Z:0C0C20	NM:i:2	UG:i:136	BX:Z:ACAGA
+SRR2057595.10082802_GCCGT	0	chr19	30861987	255	20M	*	0	0	*	*	XA:i:2	MD:Z:3C2T13	NM:i:2	UG:i:511	BX:Z:GCCGT
+SRR2057595.10082815_CCTCA	0	chr19	8798505	255	48M	*	0	0	*	*	XA:i:0	MD:Z:48	NM:i:0	UG:i:292	BX:Z:CCTCA
+SRR2057595.1008318_CTATT	16	chr19	56874049	255	67M	*	0	0	*	*	XA:i:0	MD:Z:67	NM:i:0	UG:i:672	BX:Z:CTATT
+SRR2057595.10084177_ATCAA	0	chr19	20547357	255	23M	*	0	0	*	*	XA:i:0	MD:Z:23	NM:i:0	UG:i:452	BX:Z:ATCAA
+SRR2057595.1008424_GATAA	16	chr19	47057431	255	22M	*	0	0	*	*	XA:i:2	MD:Z:6T10T4	NM:i:2	UG:i:622	BX:Z:GATAA
+SRR2057595.10084297_CTTCA	0	chr19	13129483	255	30M	*	0	0	*	*	XA:i:2	MD:Z:6G16A6	NM:i:2	UG:i:382	BX:Z:CTTCA
+SRR2057595.10084300_AGCCG	16	chr19	4078299	255	36M	*	0	0	*	*	XA:i:0	MD:Z:36	NM:i:0	UG:i:173	BX:Z:AGCCG
+SRR2057595.10084403_GACGT	0	chr19	40194275	255	30M	*	0	0	*	*	XA:i:0	MD:Z:30	NM:i:0	UG:i:565	BX:Z:GACGT
+SRR2057595.10084641_ACGCA	16	chr19	51217013	255	67M	*	0	0	*	*	XA:i:2	MD:Z:3A46A16	NM:i:2	UG:i:647	BX:Z:ACGCA
+SRR2057595.10084680_CCCCG	16	chr19	4078298	255	38M	*	0	0	*	*	XA:i:0	MD:Z:38	NM:i:0	UG:i:184	BX:Z:CCCCG
+SRR2057595.1008532_CCGCG	0	chr19	8991126	255	28M	*	0	0	*	*	XA:i:0	MD:Z:28	NM:i:0	UG:i:318	BX:Z:CCGCG
+SRR2057595.1008533_AAGGT	0	chr19	8798514	255	39M	*	0	0	*	*	XA:i:0	MD:Z:39	NM:i:0	UG:i:294	BX:Z:AAGGT
+SRR2057595.10085421_CGAGA	0	chr19	6375345	255	21M	*	0	0	*	*	XA:i:2	MD:Z:10C5G4	NM:i:2	UG:i:265	BX:Z:CGAGA
+SRR2057595.10085567_TATTC	16	chr19	5038295	255	24M	*	0	0	*	*	XA:i:0	MD:Z:24	NM:i:0	UG:i:206	BX:Z:TATTC
+SRR2057595.10085614_AATTA	16	chr19	50733889	255	62M	*	0	0	*	*	XA:i:2	MD:Z:56C0C4	NM:i:2	UG:i:645	BX:Z:AATTA
+SRR2057595.10085673_GAAGT	16	chr19	8360277	255	67M	*	0	0	*	*	XA:i:2	MD:Z:10A52A3	NM:i:2	UG:i:285	BX:Z:GAAGT
+SRR2057595.10086547_TTCGT	0	chr19	47167097	255	67M	*	0	0	*	*	XA:i:0	MD:Z:67	NM:i:0	UG:i:623	BX:Z:TTCGT
+SRR2057595.10086746_TCTTC	16	chr19	4078299	255	36M	*	0	0	*	*	XA:i:1	MD:Z:27A8	NM:i:1	UG:i:178	BX:Z:TCTGC
+SRR2057595.1008697_TTGCA	0	chr19	44434953	255	43M	*	0	0	*	*	XA:i:0	MD:Z:43	NM:i:0	UG:i:602	BX:Z:TTGCA
+SRR2057595.10087261_TTTTC	16	chr19	4078296	255	67M	*	0	0	*	*	XA:i:2	MD:Z:0T44A21	NM:i:2	UG:i:69	BX:Z:TTTTC
+SRR2057595.10087496_CACTG	16	chr19	5798673	255	42M	*	0	0	*	*	XA:i:0	MD:Z:42	NM:i:0	UG:i:249	BX:Z:CACTG
+SRR2057595.10087607_ATACG	0	chr19	13129421	255	31M	*	0	0	*	*	XA:i:1	MD:Z:11A19	NM:i:1	UG:i:393	BX:Z:ATACG
+SRR2057595.10087628_GGCGT	16	chr19	5797126	255	67M	*	0	0	*	*	XA:i:0	MD:Z:67	NM:i:0	UG:i:233	BX:Z:GGCGT
+SRR2057595.10087735_TCTGC	16	chr19	4078299	255	36M	*	0	0	*	*	XA:i:0	MD:Z:36	NM:i:0	UG:i:178	BX:Z:TCTGC
+SRR2057595.10088373_AAAGG	16	chr19	23347776	255	34M	*	0	0	*	*	XA:i:1	MD:Z:9T24	NM:i:1	UG:i:467	BX:Z:AAAGG
+SRR2057595.1008837_GCGGA	16	chr19	4078298	255	48M	*	0	0	*	*	XA:i:1	MD:Z:43A4	NM:i:1	UG:i:19	BX:Z:GCGGA
+SRR2057595.10088477_AGTCG	0	chr19	17767763	255	67M	*	0	0	*	*	XA:i:2	MD:Z:10A4A51	NM:i:2	UG:i:440	BX:Z:AGTCG
+SRR2057595.1008854_TTCGT	0	chr19	47167097	255	67M	*	0	0	*	*	XA:i:0	MD:Z:67	NM:i:0	UG:i:623	BX:Z:TTCGT
+SRR2057595.10088899_CATAA	0	chr19	13129322	255	35M	*	0	0	*	*	XA:i:1	MD:Z:33C1	NM:i:1	UG:i:401	BX:Z:CATAA
+SRR2057595.10088953_ATACC	16	chr19	35673152	255	21M	*	0	0	*	*	XA:i:2	MD:Z:7T2A10	NM:i:2	UG:i:534	BX:Z:ATACC
+SRR2057595.10088992_TATTC	16	chr19	5038295	255	24M	*	0	0	*	*	XA:i:0	MD:Z:24	NM:i:0	UG:i:206	BX:Z:TATTC
+SRR2057595.10089226_AAACA	16	chr19	4078299	255	49M	*	0	0	*	*	XA:i:1	MD:Z:42A6	NM:i:1	UG:i:33	BX:Z:AAACA
+SRR2057595.10089360_ACCTG	16	chr19	4078420	255	67M	*	0	0	*	*	XA:i:2	MD:Z:2T19A44	NM:i:2	UG:i:126	BX:Z:ACCTG
+SRR2057595.10089372_CAAAC	0	chr19	34304620	255	34M	*	0	0	*	*	XA:i:0	MD:Z:34	NM:i:0	UG:i:531	BX:Z:CAAAC
+SRR2057595.10089645_CATTT	0	chr19	49059158	255	49M	*	0	0	*	*	XA:i:2	MD:Z:30A7A10	NM:i:2	UG:i:639	BX:Z:CATTT
+SRR2057595.10089847_GCCGA	16	chr19	7389994	255	48M	*	0	0	*	*	XA:i:1	MD:Z:47C0	NM:i:1	UG:i:274	BX:Z:GCCGA
+SRR2057595.10090471_ATTCT	0	chr19	3576314	255	23M	*	0	0	*	*	XA:i:2	MD:Z:16T5T0	NM:i:2	UG:i:5	BX:Z:ATTCT
+SRR2057595.10090859_TTGCA	0	chr19	44434953	255	43M	*	0	0	*	*	XA:i:0	MD:Z:43	NM:i:0	UG:i:602	BX:Z:TTGCA
+SRR2057595.10090930_CCTCG	0	chr19	13129273	255	46M	*	0	0	*	*	XA:i:2	MD:Z:25C1T18	NM:i:2	UG:i:387	BX:Z:CCTCG
+SRR2057595.10090939_GATGG	0	chr19	44417644	255	23M	*	0	0	*	*	XA:i:2	MD:Z:15T4C2	NM:i:2	UG:i:601	BX:Z:GATGG
+SRR2057595.10091088_TCGCT	16	chr19	4078298	255	64M	*	0	0	*	*	XA:i:2	MD:Z:42G0A20	NM:i:2	UG:i:67	BX:Z:TCGCT
+SRR2057595.10091189_AGCAT	0	chr19	36976220	255	56M	*	0	0	*	*	XA:i:0	MD:Z:56	NM:i:0	UG:i:539	BX:Z:AGCAT
+SRR2057595.10091303_GTCCA	16	chr19	4078431	255	67M	*	0	0	*	*	XA:i:1	MD:Z:11A55	NM:i:1	UG:i:107	BX:Z:GTCCA
+SRR2057595.10091425_AGCTT	16	chr19	5799262	255	20M	*	0	0	*	*	XA:i:0	MD:Z:20	NM:i:0	UG:i:245	BX:Z:AGCTT
+SRR2057595.10091775_TAGTA	0	chr19	10274608	255	34M	*	0	0	*	*	XA:i:0	MD:Z:34	NM:i:0	UG:i:324	BX:Z:TAGTA
+SRR2057595.10091818_TCTGC	16	chr19	4078299	255	36M	*	0	0	*	*	XA:i:0	MD:Z:36	NM:i:0	UG:i:178	BX:Z:TCTGC
+SRR2057595.10092607_CATAA	0	chr19	13129322	255	35M	*	0	0	*	*	XA:i:1	MD:Z:33C1	NM:i:1	UG:i:401	BX:Z:CATAA
+SRR2057595.10092724_CTGAT	0	chr19	42626015	255	67M	*	0	0	*	*	XA:i:0	MD:Z:67	NM:i:0	UG:i:587	BX:Z:CTGAT
+SRR2057595.10092926_GCTAC	16	chr19	4078446	255	67M	*	0	0	*	*	XA:i:0	MD:Z:67	NM:i:0	UG:i:97	BX:Z:GCTAC
+SRR2057595.1009294_CCAAC	0	chr19	8820047	255	33M	*	0	0	*	*	XA:i:0	MD:Z:33	NM:i:0	UG:i:315	BX:Z:CCAAC
+SRR2057595.10093528_ATACG	0	chr19	13129421	255	31M	*	0	0	*	*	XA:i:1	MD:Z:11A19	NM:i:1	UG:i:393	BX:Z:ATACG
+SRR2057595.1009371_GCGGA	16	chr19	4078298	255	48M	*	0	0	*	*	XA:i:1	MD:Z:43A4	NM:i:1	UG:i:19	BX:Z:GCGGA
+SRR2057595.10094012_GTGGA	16	chr19	35902240	255	30M	*	0	0	*	*	XA:i:0	MD:Z:30	NM:i:0	UG:i:535	BX:Z:GTGGA
+SRR2057595.1009415_TTAAA	16	chr19	4785463	255	21M	*	0	0	*	*	XA:i:0	MD:Z:21	NM:i:0	UG:i:196	BX:Z:TTAAA
+SRR2057595.10094858_ATTAT	0	chr19	4755116	255	67M	*	0	0	*	*	XA:i:2	MD:Z:42C11T12	NM:i:2	UG:i:195	BX:Z:ATTAT
+SRR2057595.10094990_TCCAG	0	chr19	29662201	255	26M	*	0	0	*	*	XA:i:1	MD:Z:0C25	NM:i:1	UG:i:509	BX:Z:TCCAG
+SRR2057595.10095705_AACAG	16	chr19	4078298	255	37M	*	0	0	*	*	XA:i:0	MD:Z:37	NM:i:0	UG:i:174	BX:Z:AACAG
+SRR2057595.10095797_CGTCT	0	chr19	13129329	255	35M	*	0	0	*	*	XA:i:2	MD:Z:26C5A2	NM:i:2	UG:i:421	BX:Z:CGTCT
+SRR2057595.10095837_GCTAT	0	chr19	57701750	255	67M	*	0	0	*	*	XA:i:2	MD:Z:34T1T30	NM:i:2	UG:i:677	BX:Z:GCTAT
+SRR2057595.10096002_AGCCG	16	chr19	4078299	255	36M	*	0	0	*	*	XA:i:0	MD:Z:36	NM:i:0	UG:i:173	BX:Z:AGCCG
+SRR2057595.10096480_TTCGT	16	chr19	40658723	255	67M	*	0	0	*	*	XA:i:1	MD:Z:53T13	NM:i:1	UG:i:576	BX:Z:TTCGT
+SRR2057595.10096536_GCCGA	16	chr19	7389994	255	48M	*	0	0	*	*	XA:i:1	MD:Z:47C0	NM:i:1	UG:i:274	BX:Z:GCCGA
+SRR2057595.10096738_CTAGA	16	chr19	4078299	255	50M	*	0	0	*	*	XA:i:2	MD:Z:41G0A7	NM:i:2	UG:i:43	BX:Z:CTAGA
+SRR2057595.10096905_AATTA	16	chr19	50733890	255	61M	*	0	0	*	*	XA:i:2	MD:Z:55C0C4	NM:i:2	UG:i:645	BX:Z:AATTA
+SRR2057595.10096962_TGTTT	0	chr19	41595518	255	38M	*	0	0	*	*	XA:i:1	MD:Z:25G12	NM:i:1	UG:i:579	BX:Z:TGTTT
+SRR2057595.10096976_AGATC	16	chr19	24352786	255	67M	*	0	0	*	*	XA:i:1	MD:Z:25C41	NM:i:1	UG:i:479	BX:Z:AGATC
+SRR2057595.10097042_CACTG	16	chr19	5798673	255	42M	*	0	0	*	*	XA:i:0	MD:Z:42	NM:i:0	UG:i:249	BX:Z:CACTG
+SRR2057595.10097390_CCATC	0	chr19	5008676	255	30M	*	0	0	*	*	XA:i:2	MD:Z:1A23G4	NM:i:2	UG:i:203	BX:Z:CCATC
+SRR2057595.10097856_TATGG	0	chr19	13129322	255	56M	*	0	0	*	*	XA:i:2	MD:Z:33C5A16	NM:i:2	UG:i:405	BX:Z:TATGG
+SRR2057595.10097927_GCATA	16	chr19	4078298	255	57M	*	0	0	*	*	XA:i:2	MD:Z:42G0A13	NM:i:2	UG:i:53	BX:Z:GCATA
+SRR2057595.10098678_CTCCG	0	chr19	11195966	255	43M	*	0	0	*	*	XA:i:1	MD:Z:0T42	NM:i:1	UG:i:338	BX:Z:CTCCG
+SRR2057595.10098703_TAGTA	0	chr19	10274608	255	34M	*	0	0	*	*	XA:i:0	MD:Z:34	NM:i:0	UG:i:324	BX:Z:TAGTA
+SRR2057595.10098714_GCAGG	0	chr19	47903921	255	21M	*	0	0	*	*	XA:i:2	MD:Z:2T0T17	NM:i:2	UG:i:634	BX:Z:GCAGG
+SRR2057595.10098837_AATTA	16	chr19	50733888	255	63M	*	0	0	*	*	XA:i:2	MD:Z:57C0C4	NM:i:2	UG:i:645	BX:Z:AATTA
+SRR2057595.10098952_AAATC	16	chr19	47891298	255	21M	*	0	0	*	*	XA:i:2	MD:Z:4C11C4	NM:i:2	UG:i:633	BX:Z:AAATC
+SRR2057595.10098_GCCGA	16	chr19	7389994	255	48M	*	0	0	*	*	XA:i:1	MD:Z:47C0	NM:i:1	UG:i:274	BX:Z:GCCGA
+SRR2057595.10099454_GCTAT	0	chr19	57701750	255	67M	*	0	0	*	*	XA:i:2	MD:Z:34T1T30	NM:i:2	UG:i:677	BX:Z:GCTAT
+SRR2057595.10099862_TGATT	16	chr19	4078299	255	50M	*	0	0	*	*	XA:i:2	MD:Z:41G0A7	NM:i:2	UG:i:41	BX:Z:TGATT
+SRR2057595.10099876_AGATC	16	chr19	24352786	255	67M	*	0	0	*	*	XA:i:1	MD:Z:25C41	NM:i:1	UG:i:479	BX:Z:AGATC
+SRR2057595.10100225_GAAGT	16	chr19	8360277	255	67M	*	0	0	*	*	XA:i:2	MD:Z:10A52A3	NM:i:2	UG:i:285	BX:Z:GAAGT
+SRR2057595.10100273_CCTCG	0	chr19	13129273	255	46M	*	0	0	*	*	XA:i:2	MD:Z:25C1T18	NM:i:2	UG:i:387	BX:Z:CCTCG
+SRR2057595.10100361_AGAAT	16	chr19	24246487	255	44M	*	0	0	*	*	XA:i:0	MD:Z:44	NM:i:0	UG:i:476	BX:Z:AGAAT
+SRR2057595.10100419_TCTTG	16	chr19	4078423	255	67M	*	0	0	*	*	XA:i:1	MD:Z:19A47	NM:i:1	UG:i:111	BX:Z:TCTTG
+SRR2057595.10100887_ATACC	16	chr19	35673152	255	21M	*	0	0	*	*	XA:i:2	MD:Z:7T2A10	NM:i:2	UG:i:534	BX:Z:ATACC
+SRR2057595.10101063_ATGAA	0	chr19	56007800	255	67M	*	0	0	*	*	XA:i:0	MD:Z:67	NM:i:0	UG:i:666	BX:Z:ATGAA
+SRR2057595.10101443_TATAT	0	chr19	40194298	255	25M	*	0	0	*	*	XA:i:1	MD:Z:13A11	NM:i:1	UG:i:567	BX:Z:TATAT
+SRR2057595.10101541_TCTAC	0	chr19	8798544	255	51M	*	0	0	*	*	XA:i:0	MD:Z:51	NM:i:0	UG:i:288	BX:Z:TCTAC
+SRR2057595.10101549_AAAGA	0	chr19	42921257	255	44M	*	0	0	*	*	XA:i:2	MD:Z:4G9G29	NM:i:2	UG:i:590	BX:Z:AAAGA
+SRR2057595.10102419_GGGGC	16	chr19	4078446	255	67M	*	0	0	*	*	XA:i:1	MD:Z:66T0	NM:i:1	UG:i:98	BX:Z:GGGGC
+SRR2057595.10102630_CTATT	16	chr19	56874049	255	67M	*	0	0	*	*	XA:i:0	MD:Z:67	NM:i:0	UG:i:672	BX:Z:CTATT
+SRR2057595.10102792_GCTAA	16	chr19	32596026	255	56M	*	0	0	*	*	XA:i:0	MD:Z:56	NM:i:0	UG:i:517	BX:Z:GCTAA
+SRR2057595.10102901_AACTT	16	chr19	4078420	255	64M	*	0	0	*	*	XA:i:2	MD:Z:2T19A41	NM:i:2	UG:i:55	BX:Z:AACTT
+SRR2057595.10102918_ATTAT	16	chr19	7546213	255	27M	*	0	0	*	*	XA:i:0	MD:Z:27	NM:i:0	UG:i:278	BX:Z:ATTAT
+SRR2057595.10103451_GATCA	16	chr19	4078298	255	50M	*	0	0	*	*	XA:i:2	MD:Z:42G0A6	NM:i:2	UG:i:34	BX:Z:GATCA
+SRR2057595.10103512_TCTTG	16	chr19	61240267	255	28M	*	0	0	*	*	XA:i:1	MD:Z:11C16	NM:i:1	UG:i:705	BX:Z:TCTTA
+SRR2057595.10103749_ATCAA	0	chr19	20547357	255	23M	*	0	0	*	*	XA:i:0	MD:Z:23	NM:i:0	UG:i:452	BX:Z:ATCAA
+SRR2057595.10103791_ACGAC	16	chr19	4078298	255	38M	*	0	0	*	*	XA:i:0	MD:Z:38	NM:i:0	UG:i:186	BX:Z:ACGAC
+SRR2057595.10104373_ACAGA	16	chr19	4078299	255	22M	*	0	0	*	*	XA:i:2	MD:Z:0C0C20	NM:i:2	UG:i:136	BX:Z:ACAGA
+SRR2057595.10104410_GCAGG	16	chr19	8963035	255	30M	*	0	0	*	*	XA:i:0	MD:Z:30	NM:i:0	UG:i:317	BX:Z:GCAGG
+SRR2057595.10104500_GTATT	0	chr19	47323072	255	47M	*	0	0	*	*	XA:i:1	MD:Z:0C46	NM:i:1	UG:i:628	BX:Z:GTATT
+SRR2057595.10105258_CGCCG	16	chr19	4078299	255	59M	*	0	0	*	*	XA:i:1	MD:Z:42A16	NM:i:1	UG:i:58	BX:Z:CGCCG
+SRR2057595.10105817_GCGGA	16	chr19	4078298	255	48M	*	0	0	*	*	XA:i:1	MD:Z:43A4	NM:i:1	UG:i:19	BX:Z:GCGGA
+SRR2057595.10105818_AGCCG	16	chr19	4078299	255	36M	*	0	0	*	*	XA:i:1	MD:Z:0C35	NM:i:1	UG:i:173	BX:Z:AGCCG
+SRR2057595.10106002_TTCGC	16	chr19	4078428	255	67M	*	0	0	*	*	XA:i:2	MD:Z:14A24T27	NM:i:2	UG:i:74	BX:Z:TTCGC
+SRR2057595.10106174_CTGCC	16	chr19	3957282	255	22M	*	0	0	*	*	XA:i:2	MD:Z:17C1G2	NM:i:2	UG:i:9	BX:Z:CTGCC
+SRR2057595.10106174_CTGCC	16	chr19	3970897	255	22M	*	0	0	*	*	XA:i:2	MD:Z:17C1G2	NM:i:2	UG:i:10	BX:Z:CTGCC
+SRR2057595.10106212_AGCGC	16	chr19	27464368	255	52M	*	0	0	*	*	XA:i:0	MD:Z:52	NM:i:0	UG:i:493	BX:Z:AGCGC
+SRR2057595.10106528_GCTAT	0	chr19	57701750	255	67M	*	0	0	*	*	XA:i:2	MD:Z:34T1T30	NM:i:2	UG:i:677	BX:Z:GCTAT
+SRR2057595.1010661_ATTAT	16	chr19	7546213	255	27M	*	0	0	*	*	XA:i:0	MD:Z:27	NM:i:0	UG:i:278	BX:Z:ATTAT
+SRR2057595.10106731_CCTCA	0	chr19	8798505	255	48M	*	0	0	*	*	XA:i:0	MD:Z:48	NM:i:0	UG:i:292	BX:Z:CCTCA
+SRR2057595.10106761_CCTCG	0	chr19	13129273	255	46M	*	0	0	*	*	XA:i:2	MD:Z:25C1T18	NM:i:2	UG:i:387	BX:Z:CCTCG
+SRR2057595.10106812_CCAAG	16	chr19	4078298	255	50M	*	0	0	*	*	XA:i:2	MD:Z:42G0A6	NM:i:2	UG:i:37	BX:Z:CCAAG
+SRR2057595.10106892_AGCCG	16	chr19	4078299	255	36M	*	0	0	*	*	XA:i:1	MD:Z:25T10	NM:i:1	UG:i:173	BX:Z:AGCCG
+SRR2057595.10107056_GGCAG	0	chr19	13129322	255	22M	*	0	0	*	*	XA:i:0	MD:Z:22	NM:i:0	UG:i:409	BX:Z:GGCAG
+SRR2057595.1010759_TCTAA	0	chr19	12086447	255	46M	*	0	0	*	*	XA:i:0	MD:Z:46	NM:i:0	UG:i:364	BX:Z:TCTAA
+SRR2057595.1010759_TCTAA	0	chr19	12086782	255	46M	*	0	0	*	*	XA:i:0	MD:Z:46	NM:i:0	UG:i:369	BX:Z:TCTAA
+SRR2057595.10108058_TCTCG	16	chr19	6446235	255	26M	*	0	0	*	*	XA:i:0	MD:Z:26	NM:i:0	UG:i:266	BX:Z:TCTCG
+SRR2057595.10108108_TGTTT	0	chr19	41595519	255	37M	*	0	0	*	*	XA:i:1	MD:Z:24G12	NM:i:1	UG:i:580	BX:Z:TGTTT
+SRR2057595.10108134_TCTTG	16	chr19	4078423	255	67M	*	0	0	*	*	XA:i:1	MD:Z:19A47	NM:i:1	UG:i:111	BX:Z:TCTTG
+SRR2057595.10108322_TATTG	0	chr19	13129322	255	28M	*	0	0	*	*	XA:i:0	MD:Z:28	NM:i:0	UG:i:404	BX:Z:TATTG
+SRR2057595.10108355_TAACA	16	chr19	4078298	255	50M	*	0	0	*	*	XA:i:2	MD:Z:42G0A6	NM:i:2	UG:i:32	BX:Z:TAACA
+SRR2057595.10108853_GGCGT	16	chr19	5797126	255	67M	*	0	0	*	*	XA:i:0	MD:Z:67	NM:i:0	UG:i:233	BX:Z:GGCGT
+SRR2057595.10108990_TTGGC	16	chr19	36085526	255	67M	*	0	0	*	*	XA:i:0	MD:Z:67	NM:i:0	UG:i:536	BX:Z:TTGGC
+SRR2057595.10109290_TATGA	16	chr19	4797429	255	49M	*	0	0	*	*	XA:i:0	MD:Z:49	NM:i:0	UG:i:197	BX:Z:TATGA
+SRR2057595.10109512_CTCTT	16	chr19	10761035	255	32M	*	0	0	*	*	XA:i:0	MD:Z:32	NM:i:0	UG:i:332	BX:Z:CTCTT
+SRR2057595.10109901_ATGAA	16	chr19	4078298	255	37M	*	0	0	*	*	XA:i:0	MD:Z:37	NM:i:0	UG:i:175	BX:Z:ATAAA
+SRR2057595.10110057_TTGTT	16	chr19	61240268	255	24M	*	0	0	*	*	XA:i:1	MD:Z:10C13	NM:i:1	UG:i:696	BX:Z:TTGTT
+SRR2057595.10110159_GCCGA	16	chr19	7389994	255	48M	*	0	0	*	*	XA:i:1	MD:Z:47C0	NM:i:1	UG:i:274	BX:Z:GCCGA
+SRR2057595.10110319_TAGTA	16	chr19	61240268	255	27M	*	0	0	*	*	XA:i:1	MD:Z:10C16	NM:i:1	UG:i:702	BX:Z:TAGTA
+SRR2057595.10110664_TATTG	0	chr19	13129322	255	28M	*	0	0	*	*	XA:i:0	MD:Z:28	NM:i:0	UG:i:404	BX:Z:TATTG
+SRR2057595.10110928_ATCCG	16	chr19	37369602	255	35M	*	0	0	*	*	XA:i:0	MD:Z:35	NM:i:0	UG:i:544	BX:Z:ATCCG
+SRR2057595.10111198_TTCGC	16	chr19	4078428	255	67M	*	0	0	*	*	XA:i:2	MD:Z:14A24T27	NM:i:2	UG:i:74	BX:Z:TTCGC
+SRR2057595.10111819_CCTTT	16	chr19	4078298	255	37M	*	0	0	*	*	XA:i:0	MD:Z:37	NM:i:0	UG:i:180	BX:Z:CCTTT
+SRR2057595.1011210_GCTAC	16	chr19	4078446	255	67M	*	0	0	*	*	XA:i:0	MD:Z:67	NM:i:0	UG:i:97	BX:Z:GCTAC
+SRR2057595.10112142_GATCT	16	chr19	4078433	255	67M	*	0	0	*	*	XA:i:1	MD:Z:9A57	NM:i:1	UG:i:90	BX:Z:GATCT
+SRR2057595.10112493_TCTGT	16	chr19	45885126	255	37M	*	0	0	*	*	XA:i:0	MD:Z:37	NM:i:0	UG:i:608	BX:Z:TCTGT
+SRR2057595.10112719_GATTG	0	chr19	8799830	255	67M	*	0	0	*	*	XA:i:0	MD:Z:67	NM:i:0	UG:i:314	BX:Z:GATTG
+SRR2057595.10113412_TGTTT	0	chr19	41595518	255	38M	*	0	0	*	*	XA:i:1	MD:Z:25G12	NM:i:1	UG:i:579	BX:Z:TGTTT
+SRR2057595.1011350_CATGC	16	chr19	42000773	255	38M	*	0	0	*	*	XA:i:0	MD:Z:38	NM:i:0	UG:i:584	BX:Z:CATGC
+SRR2057595.10113554_TGACC	0	chr19	12086441	255	52M	*	0	0	*	*	XA:i:0	MD:Z:52	NM:i:0	UG:i:362	BX:Z:TGACC
+SRR2057595.10113554_TGACC	0	chr19	12086776	255	52M	*	0	0	*	*	XA:i:0	MD:Z:52	NM:i:0	UG:i:367	BX:Z:TGACC
+SRR2057595.10113832_CTAGA	0	chr19	7609388	255	42M	*	0	0	*	*	XA:i:0	MD:Z:42	NM:i:0	UG:i:279	BX:Z:CTAGA
+SRR2057595.10113868_ATGAA	0	chr19	56007800	255	67M	*	0	0	*	*	XA:i:0	MD:Z:67	NM:i:0	UG:i:666	BX:Z:ATGAA
+SRR2057595.10113897_CATGC	16	chr19	42000773	255	38M	*	0	0	*	*	XA:i:0	MD:Z:38	NM:i:0	UG:i:584	BX:Z:CATGC
+SRR2057595.10114178_TTAAA	16	chr19	4785463	255	21M	*	0	0	*	*	XA:i:0	MD:Z:21	NM:i:0	UG:i:196	BX:Z:TTAAA
+SRR2057595.10114345_GCCGA	16	chr19	7389994	255	48M	*	0	0	*	*	XA:i:1	MD:Z:47C0	NM:i:1	UG:i:274	BX:Z:GCCGA
+SRR2057595.10114548_GATGA	16	chr19	55763541	255	22M	*	0	0	*	*	XA:i:2	MD:Z:2C14G4	NM:i:2	UG:i:662	BX:Z:GATGA
+SRR2057595.10114848_GTTGT	16	chr19	12564367	255	21M	*	0	0	*	*	XA:i:2	MD:Z:0A12A7	NM:i:2	UG:i:380	BX:Z:GTTGT
+SRR2057595.10115148_CTATT	16	chr19	56874049	255	67M	*	0	0	*	*	XA:i:0	MD:Z:67	NM:i:0	UG:i:672	BX:Z:CTATT
+SRR2057595.10115906_TGGAC	16	chr19	4078420	255	67M	*	0	0	*	*	XA:i:2	MD:Z:2T19A44	NM:i:2	UG:i:127	BX:Z:TGGAC
+SRR2057595.10116129_GACTC	16	chr19	25016726	255	31M	*	0	0	*	*	XA:i:0	MD:Z:31	NM:i:0	UG:i:483	BX:Z:GACTC
+SRR2057595.10116129_GACTC	16	chr19	60850233	255	31M	*	0	0	*	*	XA:i:0	MD:Z:31	NM:i:0	UG:i:693	BX:Z:GACTC
+SRR2057595.10116527_CTTAC	16	chr19	4078298	255	54M	*	0	0	*	*	XA:i:2	MD:Z:42G0A10	NM:i:2	UG:i:49	BX:Z:CTTAC
+SRR2057595.10116529_GTCCT	16	chr19	59694502	255	21M	*	0	0	*	*	XA:i:2	MD:Z:8T0A11	NM:i:2	UG:i:688	BX:Z:GTCCT
+SRR2057595.1011687_TAACA	16	chr19	4078298	255	50M	*	0	0	*	*	XA:i:2	MD:Z:42G0A6	NM:i:2	UG:i:32	BX:Z:TAACA
+SRR2057595.10116904_TTTTC	16	chr19	4078296	255	67M	*	0	0	*	*	XA:i:2	MD:Z:0T44A21	NM:i:2	UG:i:69	BX:Z:TTTTC
+SRR2057595.10117105_CGCTT	0	chr19	13129322	255	26M	*	0	0	*	*	XA:i:0	MD:Z:26	NM:i:0	UG:i:406	BX:Z:CGCTT
+SRR2057595.10117768_TATCA	16	chr19	60837460	255	67M	*	0	0	*	*	XA:i:0	MD:Z:67	NM:i:0	UG:i:691	BX:Z:TATCA
+SRR2057595.1011778_TGTTT	0	chr19	41595518	255	38M	*	0	0	*	*	XA:i:1	MD:Z:25G12	NM:i:1	UG:i:579	BX:Z:TGTTT
+SRR2057595.10117819_CTAGC	16	chr19	4078298	255	62M	*	0	0	*	*	XA:i:2	MD:Z:21C21A18	NM:i:2	UG:i:63	BX:Z:CTAGC
+SRR2057595.10117947_AATCG	16	chr19	4078303	255	67M	*	0	0	*	*	XA:i:2	MD:Z:38A21A6	NM:i:2	UG:i:88	BX:Z:AATCG
+SRR2057595.10118173_TTCGT	0	chr19	36922761	255	57M	*	0	0	*	*	XA:i:1	MD:Z:5C51	NM:i:1	UG:i:538	BX:Z:TTCGT
+SRR2057595.10118916_AGCCG	16	chr19	4078299	255	36M	*	0	0	*	*	XA:i:0	MD:Z:36	NM:i:0	UG:i:173	BX:Z:AGCCG
+SRR2057595.10119454_TGTTT	0	chr19	41595518	255	38M	*	0	0	*	*	XA:i:1	MD:Z:25G12	NM:i:1	UG:i:579	BX:Z:TGTTT
+SRR2057595.10119776_GTCAA	16	chr19	4078298	255	57M	*	0	0	*	*	XA:i:1	MD:Z:43A13	NM:i:1	UG:i:52	BX:Z:GTCAA
+SRR2057595.10119820_CAGAC	0	chr19	5493782	255	41M	*	0	0	*	*	XA:i:0	MD:Z:41	NM:i:0	UG:i:218	BX:Z:CAGAC
+SRR2057595.10119919_GAATG	16	chr19	33191616	255	28M	*	0	0	*	*	XA:i:2	MD:Z:1G17G8	NM:i:2	UG:i:526	BX:Z:GAATG
+SRR2057595.10120218_TGGTA	16	chr19	28085954	255	38M	*	0	0	*	*	XA:i:0	MD:Z:38	NM:i:0	UG:i:498	BX:Z:TGGTA
+SRR2057595.10120257_TCAGG	0	chr19	13129322	255	35M	*	0	0	*	*	XA:i:1	MD:Z:33C1	NM:i:1	UG:i:407	BX:Z:TCAGG
+SRR2057595.10120271_GTCCC	0	chr19	12347657	255	32M	*	0	0	*	*	XA:i:0	MD:Z:32	NM:i:0	UG:i:372	BX:Z:GTCCC
+SRR2057595.10120271_GTCCC	0	chr19	12348043	255	32M	*	0	0	*	*	XA:i:0	MD:Z:32	NM:i:0	UG:i:374	BX:Z:GTCCC
+SRR2057595.10120271_GTCCC	16	chr19	15035071	255	32M	*	0	0	*	*	XA:i:1	MD:Z:29T2	NM:i:1	UG:i:428	BX:Z:GTCCC
+SRR2057595.10120377_TATTC	16	chr19	5038295	255	24M	*	0	0	*	*	XA:i:0	MD:Z:24	NM:i:0	UG:i:206	BX:Z:TATTC
+SRR2057595.10120569_GCATA	16	chr19	4078298	255	57M	*	0	0	*	*	XA:i:2	MD:Z:42G0A13	NM:i:2	UG:i:53	BX:Z:GCATA
+SRR2057595.10120734_AGTAA	16	chr19	4078423	255	67M	*	0	0	*	*	XA:i:2	MD:Z:19A24T22	NM:i:2	UG:i:110	BX:Z:AGTAA
+SRR2057595.10120758_AACGC	16	chr19	4078298	255	51M	*	0	0	*	*	XA:i:1	MD:Z:43A7	NM:i:1	UG:i:42	BX:Z:AACGC
+SRR2057595.10120905_ACCTG	16	chr19	4078420	255	67M	*	0	0	*	*	XA:i:2	MD:Z:2T19A44	NM:i:2	UG:i:126	BX:Z:ACCTG
+SRR2057595.10121117_TGTTC	0	chr19	61241963	255	27M	*	0	0	*	*	XA:i:2	MD:Z:20A5G0	NM:i:2	UG:i:719	BX:Z:TGTTC
+SRR2057595.10121638_AATTA	16	chr19	50733888	255	63M	*	0	0	*	*	XA:i:2	MD:Z:57C0C4	NM:i:2	UG:i:645	BX:Z:AATTA
+SRR2057595.10122214_TATTG	0	chr19	13129322	255	28M	*	0	0	*	*	XA:i:0	MD:Z:28	NM:i:0	UG:i:404	BX:Z:TATTG
+SRR2057595.10122328_TAAAG	16	chr19	61240268	255	28M	*	0	0	*	*	XA:i:1	MD:Z:10C17	NM:i:1	UG:i:710	BX:Z:TAAAG
+SRR2057595.10122369_AGCTT	16	chr19	5799262	255	20M	*	0	0	*	*	XA:i:0	MD:Z:20	NM:i:0	UG:i:245	BX:Z:AGCTT
+SRR2057595.10122580_AAGGT	0	chr19	8798514	255	39M	*	0	0	*	*	XA:i:0	MD:Z:39	NM:i:0	UG:i:294	BX:Z:AAGGT
+SRR2057595.101226_AACTT	16	chr19	4078420	255	64M	*	0	0	*	*	XA:i:2	MD:Z:2T19A41	NM:i:2	UG:i:55	BX:Z:AACTT
+SRR2057595.10123331_ATTAT	16	chr19	7546213	255	27M	*	0	0	*	*	XA:i:0	MD:Z:27	NM:i:0	UG:i:278	BX:Z:ATTAT
+SRR2057595.10123377_CTAAT	0	chr19	40194243	255	44M	*	0	0	*	*	XA:i:2	MD:Z:5T20A17	NM:i:2	UG:i:562	BX:Z:CTAAT
+SRR2057595.1012355_CAACT	16	chr19	4078298	255	49M	*	0	0	*	*	XA:i:2	MD:Z:42G0A5	NM:i:2	UG:i:25	BX:Z:CAACT
+SRR2057595.10123626_TCTAC	0	chr19	8798544	255	51M	*	0	0	*	*	XA:i:0	MD:Z:51	NM:i:0	UG:i:288	BX:Z:TCTAC
+SRR2057595.10124059_GATGA	16	chr19	55763541	255	22M	*	0	0	*	*	XA:i:2	MD:Z:2C14G4	NM:i:2	UG:i:662	BX:Z:GATGA
+SRR2057595.1012426_CATTT	0	chr19	49059158	255	49M	*	0	0	*	*	XA:i:2	MD:Z:30A7A10	NM:i:2	UG:i:639	BX:Z:CATTT
+SRR2057595.10125107_TATGG	0	chr19	13129322	255	56M	*	0	0	*	*	XA:i:2	MD:Z:33C5A16	NM:i:2	UG:i:405	BX:Z:TATGG
+SRR2057595.1012543_GGATC	16	chr19	4078298	255	61M	*	0	0	*	*	XA:i:2	MD:Z:42G0A17	NM:i:2	UG:i:61	BX:Z:GGATC
+SRR2057595.10125580_TGCTA	0	chr19	10830415	255	21M	*	0	0	*	*	XA:i:2	MD:Z:0A10C9	NM:i:2	UG:i:334	BX:Z:TGCTA
+SRR2057595.1012559_TGATT	16	chr19	4078299	255	50M	*	0	0	*	*	XA:i:2	MD:Z:41G0A7	NM:i:2	UG:i:41	BX:Z:TGATT
+SRR2057595.10125877_CTATT	16	chr19	56874049	255	67M	*	0	0	*	*	XA:i:0	MD:Z:67	NM:i:0	UG:i:672	BX:Z:CTATT
+SRR2057595.10125930_ATCGG	0	chr19	8799853	255	44M	*	0	0	*	*	XA:i:0	MD:Z:44	NM:i:0	UG:i:310	BX:Z:ATCGG
+SRR2057595.10125966_GATGA	16	chr19	55763541	255	22M	*	0	0	*	*	XA:i:2	MD:Z:2C14G4	NM:i:2	UG:i:662	BX:Z:GATGA
+SRR2057595.10126475_TCAGG	0	chr19	38669715	255	54M	*	0	0	*	*	XA:i:0	MD:Z:54	NM:i:0	UG:i:550	BX:Z:TCAGG
+SRR2057595.10126817_CAGAC	0	chr19	5493782	255	41M	*	0	0	*	*	XA:i:0	MD:Z:41	NM:i:0	UG:i:218	BX:Z:CAGAC
+SRR2057595.1012699_TTTTC	16	chr19	4078296	255	67M	*	0	0	*	*	XA:i:2	MD:Z:0T44A21	NM:i:2	UG:i:69	BX:Z:TTTTC
+SRR2057595.10127386_GCAGA	0	chr19	8799844	255	53M	*	0	0	*	*	XA:i:0	MD:Z:53	NM:i:0	UG:i:309	BX:Z:GCAGA
+SRR2057595.10127482_AAGGT	0	chr19	8798514	255	39M	*	0	0	*	*	XA:i:0	MD:Z:39	NM:i:0	UG:i:294	BX:Z:AAGGT
+SRR2057595.10127633_GGACC	16	chr19	4078298	255	28M	*	0	0	*	*	XA:i:1	MD:Z:18C9	NM:i:1	UG:i:143	BX:Z:GGACC
+SRR2057595.10127800_CCTTT	16	chr19	4078298	255	37M	*	0	0	*	*	XA:i:0	MD:Z:37	NM:i:0	UG:i:180	BX:Z:CCTTT
+SRR2057595.10127806_TTTTC	16	chr19	4078296	255	67M	*	0	0	*	*	XA:i:2	MD:Z:0T44A21	NM:i:2	UG:i:69	BX:Z:TTTTC
+SRR2057595.10127925_GCCGA	16	chr19	7389994	255	48M	*	0	0	*	*	XA:i:1	MD:Z:47C0	NM:i:1	UG:i:274	BX:Z:GCCGA
+SRR2057595.10127969_TCAGC	16	chr19	4078298	255	49M	*	0	0	*	*	XA:i:1	MD:Z:43A5	NM:i:1	UG:i:23	BX:Z:TCAGC
+SRR2057595.10128074_TATTC	16	chr19	5038295	255	24M	*	0	0	*	*	XA:i:0	MD:Z:24	NM:i:0	UG:i:206	BX:Z:TATTC
+SRR2057595.10128154_CTAGG	16	chr19	5798663	255	67M	*	0	0	*	*	XA:i:2	MD:Z:0G0G65	NM:i:2	UG:i:242	BX:Z:CTAGG
+SRR2057595.10128297_ATAAA	16	chr19	4078298	255	37M	*	0	0	*	*	XA:i:0	MD:Z:37	NM:i:0	UG:i:175	BX:Z:ATAAA
+SRR2057595.10128465_TTGCA	0	chr19	44434953	255	43M	*	0	0	*	*	XA:i:0	MD:Z:43	NM:i:0	UG:i:602	BX:Z:TTGCA
+SRR2057595.10128496_AGCCG	16	chr19	4078298	255	39M	*	0	0	*	*	XA:i:0	MD:Z:39	NM:i:0	UG:i:11	BX:Z:AGCCG
+SRR2057595.1012868_AAACA	16	chr19	4078299	255	49M	*	0	0	*	*	XA:i:1	MD:Z:42A6	NM:i:1	UG:i:33	BX:Z:AAACA
+SRR2057595.1012871_TTCGC	16	chr19	4078428	255	67M	*	0	0	*	*	XA:i:2	MD:Z:14A24T27	NM:i:2	UG:i:74	BX:Z:TTCGC
+SRR2057595.10128720_CCTCA	0	chr19	8798505	255	48M	*	0	0	*	*	XA:i:0	MD:Z:48	NM:i:0	UG:i:292	BX:Z:CCTCA
+SRR2057595.10128783_TTGCA	0	chr19	44434953	255	43M	*	0	0	*	*	XA:i:0	MD:Z:43	NM:i:0	UG:i:602	BX:Z:TTGCA
+SRR2057595.10128887_ATACC	16	chr19	35673152	255	21M	*	0	0	*	*	XA:i:2	MD:Z:7T2A10	NM:i:2	UG:i:534	BX:Z:ATACC
+SRR2057595.10128931_AGCCG	16	chr19	4078299	255	36M	*	0	0	*	*	XA:i:0	MD:Z:36	NM:i:0	UG:i:173	BX:Z:AGCCG
+SRR2057595.10129033_ACAGA	16	chr19	4078299	255	22M	*	0	0	*	*	XA:i:2	MD:Z:0C0C20	NM:i:2	UG:i:136	BX:Z:ACAGA
+SRR2057595.10129046_TCAAA	16	chr19	4078298	255	38M	*	0	0	*	*	XA:i:0	MD:Z:38	NM:i:0	UG:i:185	BX:Z:TCAAA
+SRR2057595.10129405_ATGAA	16	chr19	4078298	255	37M	*	0	0	*	*	XA:i:0	MD:Z:37	NM:i:0	UG:i:175	BX:Z:ATAAA
+SRR2057595.1012950_GGGAT	0	chr19	13129424	255	25M	*	0	0	*	*	XA:i:1	MD:Z:8A16	NM:i:1	UG:i:394	BX:Z:GGGAT
+SRR2057595.10129521_CGCCG	16	chr19	4078299	255	59M	*	0	0	*	*	XA:i:1	MD:Z:42A16	NM:i:1	UG:i:58	BX:Z:CGCCG
+SRR2057595.10129734_TATTG	0	chr19	13129322	255	28M	*	0	0	*	*	XA:i:0	MD:Z:28	NM:i:0	UG:i:404	BX:Z:TATTG
+SRR2057595.10130199_GGCAG	0	chr19	13129322	255	22M	*	0	0	*	*	XA:i:0	MD:Z:22	NM:i:0	UG:i:409	BX:Z:GGCAG
+SRR2057595.10130333_GTCGC	0	chr19	12080548	255	51M	*	0	0	*	*	XA:i:2	MD:Z:28C20G1	NM:i:2	UG:i:345	BX:Z:GTCGC
+SRR2057595.10130333_GTCGC	16	chr19	12084189	255	51M	*	0	0	*	*	XA:i:2	MD:Z:1C20G28	NM:i:2	UG:i:352	BX:Z:GTCGC
+SRR2057595.10130767_ATACC	16	chr19	35673152	255	21M	*	0	0	*	*	XA:i:2	MD:Z:7T2A10	NM:i:2	UG:i:534	BX:Z:ATACC
+SRR2057595.10130878_TTAGT	16	chr19	4078302	255	67M	*	0	0	*	*	XA:i:2	MD:Z:39A21A5	NM:i:2	UG:i:81	BX:Z:TTAGT
+SRR2057595.10131031_AGCTT	16	chr19	5799262	255	20M	*	0	0	*	*	XA:i:0	MD:Z:20	NM:i:0	UG:i:245	BX:Z:AGCTT
+SRR2057595.10131148_CAGCA	16	chr19	5801892	255	47M	*	0	0	*	*	XA:i:0	MD:Z:47	NM:i:0	UG:i:258	BX:Z:CAGCA
+SRR2057595.10131269_CATGC	0	chr19	13129570	255	22M	*	0	0	*	*	XA:i:1	MD:Z:9A12	NM:i:1	UG:i:392	BX:Z:CATGC
+SRR2057595.10131482_CTTTC	16	chr19	4078298	255	53M	*	0	0	*	*	XA:i:2	MD:Z:42G0A9	NM:i:2	UG:i:47	BX:Z:CTTTC
+SRR2057595.10132002_CCCGT	16	chr19	47349292	255	19M	*	0	0	*	*	XA:i:2	MD:Z:8A3G6	NM:i:2	UG:i:629	BX:Z:CCCGT
+SRR2057595.10132034_ATACC	16	chr19	35673152	255	21M	*	0	0	*	*	XA:i:2	MD:Z:7T2A10	NM:i:2	UG:i:534	BX:Z:ATACC
+SRR2057595.10132108_TCTAC	0	chr19	8798544	255	51M	*	0	0	*	*	XA:i:0	MD:Z:51	NM:i:0	UG:i:288	BX:Z:TCTAC
+SRR2057595.10132494_CGAAC	0	chr19	13129273	255	36M	*	0	0	*	*	XA:i:2	MD:Z:25C1T8	NM:i:2	UG:i:386	BX:Z:CGAAC
+SRR2057595.10133086_TCTTA	16	chr19	61240268	255	27M	*	0	0	*	*	XA:i:1	MD:Z:10C16	NM:i:1	UG:i:705	BX:Z:TCTTA
+SRR2057595.10133357_GTCGC	0	chr19	12080548	255	51M	*	0	0	*	*	XA:i:2	MD:Z:28C20G1	NM:i:2	UG:i:345	BX:Z:GTCGC
+SRR2057595.10133357_GTCGC	16	chr19	12084189	255	51M	*	0	0	*	*	XA:i:2	MD:Z:1C20G28	NM:i:2	UG:i:352	BX:Z:GTCGC
+SRR2057595.1013336_TTGTT	16	chr19	61240268	255	24M	*	0	0	*	*	XA:i:1	MD:Z:10C13	NM:i:1	UG:i:696	BX:Z:TTGTT
+SRR2057595.10133381_AGAGT	16	chr19	24180225	255	55M	*	0	0	*	*	XA:i:1	MD:Z:41C13	NM:i:1	UG:i:474	BX:Z:AGAGT
+SRR2057595.10133440_CTGCG	16	chr19	61240305	255	36M	*	0	0	*	*	XA:i:2	MD:Z:17A4T13	NM:i:2	UG:i:712	BX:Z:CTGCG
+SRR2057595.10134016_GACAC	0	chr19	12348541	255	26M	*	0	0	*	*	XA:i:0	MD:Z:26	NM:i:0	UG:i:378	BX:Z:GACAC
+SRR2057595.10134016_GACAC	16	chr19	15034579	255	26M	*	0	0	*	*	XA:i:0	MD:Z:26	NM:i:0	UG:i:429	BX:Z:GACAC
+SRR2057595.10134072_GCAGG	16	chr19	8963035	255	30M	*	0	0	*	*	XA:i:0	MD:Z:30	NM:i:0	UG:i:317	BX:Z:GCAGG
+SRR2057595.1013452_ATATA	0	chr19	13129330	255	22M	*	0	0	*	*	XA:i:1	MD:Z:0T21	NM:i:1	UG:i:422	BX:Z:ATATA
+SRR2057595.10134979_AGTAT	0	chr19	10600420	255	29M	*	0	0	*	*	XA:i:0	MD:Z:29	NM:i:0	UG:i:328	BX:Z:AGTAT
+SRR2057595.10135304_GTCCA	16	chr19	4078431	255	67M	*	0	0	*	*	XA:i:1	MD:Z:11A55	NM:i:1	UG:i:107	BX:Z:GTCCA
+SRR2057595.1013548_TGTTT	16	chr19	50526830	255	51M	*	0	0	*	*	XA:i:0	MD:Z:51	NM:i:0	UG:i:643	BX:Z:TGTTT
+SRR2057595.10135758_TTGCA	0	chr19	44434953	255	43M	*	0	0	*	*	XA:i:0	MD:Z:43	NM:i:0	UG:i:602	BX:Z:TTGCA
+SRR2057595.10135807_CCCGT	16	chr19	47349292	255	19M	*	0	0	*	*	XA:i:2	MD:Z:8A3G6	NM:i:2	UG:i:629	BX:Z:CCCGT
+SRR2057595.1013613_GATTG	0	chr19	55501486	255	31M	*	0	0	*	*	XA:i:1	MD:Z:8A22	NM:i:1	UG:i:659	BX:Z:GATTG
+SRR2057595.1013616_ATAGA	0	chr19	38795805	255	62M	*	0	0	*	*	XA:i:1	MD:Z:46A15	NM:i:1	UG:i:553	BX:Z:ATAGA
+SRR2057595.10136267_TTCGC	16	chr19	4078428	255	67M	*	0	0	*	*	XA:i:2	MD:Z:14A24T27	NM:i:2	UG:i:74	BX:Z:TTCGC
+SRR2057595.10136714_ATCCG	16	chr19	37369602	255	35M	*	0	0	*	*	XA:i:0	MD:Z:35	NM:i:0	UG:i:544	BX:Z:ATCCG
+SRR2057595.10136765_GCTAT	0	chr19	57701750	255	67M	*	0	0	*	*	XA:i:2	MD:Z:34T1T30	NM:i:2	UG:i:677	BX:Z:GCTAT
+SRR2057595.10137151_ATTCT	0	chr19	3576314	255	23M	*	0	0	*	*	XA:i:2	MD:Z:16T5T0	NM:i:2	UG:i:5	BX:Z:ATTCT
+SRR2057595.10137262_ACAAA	16	chr19	4078298	255	49M	*	0	0	*	*	XA:i:1	MD:Z:43A5	NM:i:1	UG:i:27	BX:Z:ACAAA
+SRR2057595.10137317_GATTG	0	chr19	8799830	255	67M	*	0	0	*	*	XA:i:0	MD:Z:67	NM:i:0	UG:i:314	BX:Z:GATTG
+SRR2057595.10137603_GCTAT	16	chr19	61240267	255	28M	*	0	0	*	*	XA:i:1	MD:Z:11C16	NM:i:1	UG:i:706	BX:Z:GCTAT
+SRR2057595.10137788_TAGTA	0	chr19	10274608	255	34M	*	0	0	*	*	XA:i:0	MD:Z:34	NM:i:0	UG:i:324	BX:Z:TAGTA
+SRR2057595.1013793_GCGCA	0	chr19	8798523	255	30M	*	0	0	*	*	XA:i:0	MD:Z:30	NM:i:0	UG:i:295	BX:Z:GCGCA
+SRR2057595.10138029_GTTGT	16	chr19	12564367	255	21M	*	0	0	*	*	XA:i:2	MD:Z:0A12A7	NM:i:2	UG:i:380	BX:Z:GTTGT
+SRR2057595.10138656_CTAGC	16	chr19	4078298	255	62M	*	0	0	*	*	XA:i:1	MD:Z:43A18	NM:i:1	UG:i:63	BX:Z:CTAGC
+SRR2057595.10138697_GCCGT	0	chr19	30861987	255	20M	*	0	0	*	*	XA:i:2	MD:Z:3C2T13	NM:i:2	UG:i:511	BX:Z:GCCGT
+SRR2057595.10138764_GATGG	0	chr19	44417644	255	23M	*	0	0	*	*	XA:i:2	MD:Z:15T4C2	NM:i:2	UG:i:601	BX:Z:GATGG
+SRR2057595.10138897_TGATT	16	chr19	4078299	255	50M	*	0	0	*	*	XA:i:2	MD:Z:41G0A7	NM:i:2	UG:i:41	BX:Z:TGATT
+SRR2057595.10139239_GAGTG	0	chr19	8798502	255	51M	*	0	0	*	*	XA:i:0	MD:Z:51	NM:i:0	UG:i:289	BX:Z:GAGTG
+SRR2057595.10139499_AGTCT	0	chr19	13129558	255	37M	*	0	0	*	*	XA:i:1	MD:Z:21A15	NM:i:1	UG:i:398	BX:Z:AGTCT
+SRR2057595.10139596_GCTAC	16	chr19	4078446	255	67M	*	0	0	*	*	XA:i:0	MD:Z:67	NM:i:0	UG:i:97	BX:Z:GCTAC
+SRR2057595.10139652_GGATG	0	chr19	13129322	255	27M	*	0	0	*	*	XA:i:0	MD:Z:27	NM:i:0	UG:i:402	BX:Z:GGATG
+SRR2057595.10139674_ATGAA	16	chr19	4078298	255	37M	*	0	0	*	*	XA:i:0	MD:Z:37	NM:i:0	UG:i:175	BX:Z:ATAAA
+SRR2057595.10139952_TAGTA	16	chr19	61240268	255	27M	*	0	0	*	*	XA:i:1	MD:Z:10C16	NM:i:1	UG:i:702	BX:Z:TAGTA
+SRR2057595.10140058_ATATA	0	chr19	13129330	255	22M	*	0	0	*	*	XA:i:1	MD:Z:0T21	NM:i:1	UG:i:422	BX:Z:ATATA
+SRR2057595.10141122_GTCCC	0	chr19	12347657	255	32M	*	0	0	*	*	XA:i:0	MD:Z:32	NM:i:0	UG:i:372	BX:Z:GTCCC
+SRR2057595.10141122_GTCCC	0	chr19	12348043	255	32M	*	0	0	*	*	XA:i:0	MD:Z:32	NM:i:0	UG:i:374	BX:Z:GTCCC
+SRR2057595.10141122_GTCCC	16	chr19	15035071	255	32M	*	0	0	*	*	XA:i:1	MD:Z:29T2	NM:i:1	UG:i:428	BX:Z:GTCCC
+SRR2057595.10141295_TAGTA	0	chr19	10274608	255	34M	*	0	0	*	*	XA:i:0	MD:Z:34	NM:i:0	UG:i:324	BX:Z:TAGTA
+SRR2057595.10142441_GTCTA	16	chr19	4078420	255	67M	*	0	0	*	*	XA:i:2	MD:Z:2T19A44	NM:i:2	UG:i:124	BX:Z:GTCTA
+SRR2057595.10142482_GCCGA	16	chr19	7389994	255	48M	*	0	0	*	*	XA:i:1	MD:Z:47C0	NM:i:1	UG:i:274	BX:Z:GCCGA
+SRR2057595.10143102_AAGTA	16	chr19	31326011	255	57M	*	0	0	*	*	XA:i:1	MD:Z:23A33	NM:i:1	UG:i:512	BX:Z:AAGTA
+SRR2057595.10143387_GCATA	16	chr19	4078298	255	57M	*	0	0	*	*	XA:i:2	MD:Z:42G0A13	NM:i:2	UG:i:53	BX:Z:GCATA
+SRR2057595.10143631_ATTTT	0	chr19	45095257	255	57M	*	0	0	*	*	XA:i:0	MD:Z:57	NM:i:0	UG:i:606	BX:Z:ATTTT
+SRR2057595.10143687_CGCTT	0	chr19	13129322	255	26M	*	0	0	*	*	XA:i:0	MD:Z:26	NM:i:0	UG:i:406	BX:Z:CGCTT
+SRR2057595.10143772_TGATT	16	chr19	4078299	255	50M	*	0	0	*	*	XA:i:2	MD:Z:41G0A7	NM:i:2	UG:i:41	BX:Z:TGATT
+SRR2057595.10143909_CAGAC	0	chr19	5493782	255	41M	*	0	0	*	*	XA:i:0	MD:Z:41	NM:i:0	UG:i:218	BX:Z:CAGAC
+SRR2057595.10143972_CTTAC	16	chr19	4078298	255	54M	*	0	0	*	*	XA:i:2	MD:Z:42G0A10	NM:i:2	UG:i:49	BX:Z:CTTAC
+SRR2057595.10144216_CATAA	0	chr19	13129322	255	35M	*	0	0	*	*	XA:i:1	MD:Z:33C1	NM:i:1	UG:i:401	BX:Z:CATAA
+SRR2057595.10144367_ATGAT	16	chr19	61240306	255	36M	*	0	0	*	*	XA:i:2	MD:Z:16A4T14	NM:i:2	UG:i:716	BX:Z:ATGAT
diff -r 000000000000 -r 8db56d2f8b72 test-data/group_in2.bam
Binary file test-data/group_in2.bam has changed
diff -r 000000000000 -r 8db56d2f8b72 test-data/group_in3.bam
Binary file test-data/group_in3.bam has changed
diff -r 000000000000 -r 8db56d2f8b72 test-data/group_in4.bam
Binary file test-data/group_in4.bam has changed
diff -r 000000000000 -r 8db56d2f8b72 test-data/group_in5.bam
Binary file test-data/group_in5.bam has changed
diff -r 000000000000 -r 8db56d2f8b72 test-data/group_in6.bam
Binary file test-data/group_in6.bam has changed
diff -r 000000000000 -r 8db56d2f8b72 test-data/group_out2.bam
Binary file test-data/group_out2.bam has changed
diff -r 000000000000 -r 8db56d2f8b72 test-data/group_out3.bam
Binary file test-data/group_out3.bam has changed
diff -r 000000000000 -r 8db56d2f8b72 test-data/group_out3.tab
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/group_out3.tab	Thu Jun 21 15:20:14 2018 -0400
@@ -0,0 +1,498 @@
+read_id	contig	position	gene	umi	umi_count	final_umi	final_umi_count	unique_id
+chrM_81_583_3:0:0_2:0:0_f4/1_TT	chrM	80	NA	TT	1	TT	1	0
+chrM_110_732_3:0:0_2:0:0_160/1_CC	chrM	109	NA	CC	1	CC	1	1
+chrM_118_613_6:0:0_4:0:0_169/1_AG	chrM	117	NA	AG	1	AG	1	2
+chrM_149_684_2:0:0_2:0:0_6e/1_TA	chrM	148	NA	TA	1	TA	1	3
+chrM_152_616_6:0:0_2:0:0_84/1_GC	chrM	151	NA	GC	1	GC	1	4
+chrM_247_748_8:0:0_1:0:0_1b7/1_GC	chrM	246	NA	GC	1	GC	1	5
+chrM_280_772_1:0:0_9:0:0_31/1_CG	chrM	279	NA	CG	1	CG	1	6
+chrM_292_819_2:0:0_1:0:0_18d/1_CA	chrM	291	NA	CA	1	CA	1	7
+chrM_390_890_3:0:0_6:0:0_bf/1_CA	chrM	389	NA	CA	1	CA	1	8
+chrM_447_921_2:0:0_3:0:0_1cc/1_AC	chrM	446	NA	AC	1	AC	1	9
+chrM_469_983_2:0:0_1:0:0_121/1_AC	chrM	468	NA	AC	1	AC	1	10
+chrM_541_1074_3:0:0_8:1:0_22/1_AC	chrM	540	NA	AC	1	AC	1	11
+chrM_8_556_3:0:0_2:0:0_1b1/1_AC	chrM	556	NA	AC	1	AC	1	12
+chrM_112_577_2:0:0_4:0:0_17b/1_CG	chrM	577	NA	CG	1	CG	1	13
+chrM_627_1063_6:0:0_4:1:0_12a/1_AA	chrM	626	NA	AA	1	AA	1	14
+chrM_164_650_5:0:0_3:0:0_164/1_AC	chrM	650	NA	AC	1	AC	1	15
+chrM_200_695_6:0:0_2:0:0_5a/1_TA	chrM	695	NA	TA	3	TA	3	16
+chrM_168_695_5:0:0_2:0:0_1af/1_TA	chrM	695	NA	TA	3	TA	3	16
+chrM_170_695_1:0:0_6:0:0_1e3/1_TA	chrM	695	NA	TA	3	TA	3	16
+chrM_209_705_3:0:0_2:0:0_1b3/1_TA	chrM	705	NA	TA	1	TA	1	17
+chrM_288_807_3:0:0_5:0:0_8e/1_AG	chrM	807	NA	AG	1	AG	1	18
+chrM_818_1274_1:1:0_4:0:0_124/1_TC	chrM	817	NA	TC	1	TC	1	19
+chrM_442_872_4:0:0_6:0:0_146/1_AT	chrM	872	NA	AT	1	AT	1	20
+chrM_460_919_3:0:0_1:0:0_0/1_GA	chrM	919	NA	GA	1	GA	1	21
+chrM_384_950_5:0:0_2:0:0_34/1_GG	chrM	950	NA	GG	1	GG	1	22
+chrM_476_980_5:0:0_2:0:0_133/1_TA	chrM	980	NA	TA	1	TA	1	23
+chrM_552_999_4:0:0_5:0:0_bb/1_AT	chrM	999	NA	AT	1	AT	1	24
+chrM_512_1030_5:0:0_7:1:0_a5/1_AC	chrM	1030	NA	AC	1	AC	1	25
+chrM_1103_1634_5:0:0_3:0:0_36/1_TA	chrM	1102	NA	TA	1	TA	1	26
+chrM_648_1148_3:0:0_3:1:0_1d1/1_TT	chrM	1148	NA	TT	1	TT	1	27
+chrM_1167_1797_8:0:0_2:1:0_14e/1_GT	chrM	1166	NA	GT	1	GT	1	28
+chrM_619_1169_3:0:0_5:1:0_33/1_CC	chrM	1169	NA	CC	1	CC	1	29
+chrM_668_1248_0:0:0_4:0:0_fa/1_TT	chrM	1248	NA	TT	1	TT	1	30
+chrM_1288_1759_4:0:0_2:1:0_a1/1_TA	chrM	1287	NA	TA	1	TA	1	31
+chrM_1327_1786_4:0:0_3:1:0_1ad/1_CA	chrM	1326	NA	CA	1	CA	1	32
+chrM_866_1351_5:1:0_6:0:0_1c9/1_TA	chrM	1351	NA	TA	1	TA	1	33
+chrM_853_1366_6:1:0_4:0:0_13b/1_TC	chrM	1366	NA	TC	1	TC	1	34
+chrM_1399_1851_2:0:0_11:1:0_85/1_AT	chrM	1398	NA	AT	1	AT	1	35
+chrM_946_1444_4:1:0_6:0:0_113/1_TT	chrM	1444	NA	TT	1	TT	1	36
+chrM_943_1485_2:1:0_5:0:0_1e2/1_AT	chrM	1485	NA	AT	1	AT	1	37
+chrM_1022_1501_4:0:0_5:0:0_132/1_GA	chrM	1501	NA	GA	1	GA	1	38
+chrM_1504_2013_4:1:0_3:0:0_10b/1_AT	chrM	1503	NA	AT	1	AT	1	39
+chrM_1505_1934_1:1:0_5:0:0_157/1_TC	chrM	1504	NA	TC	1	TC	1	40
+chrM_997_1511_2:1:0_1:0:0_1d8/1_AT	chrM	1511	NA	AT	1	AT	1	41
+chrM_1521_2070_5:1:0_3:0:0_1a/1_TA	chrM	1520	NA	TA	1	TA	1	42
+chrM_1575_2126_5:1:0_2:1:0_18c/1_TA	chrM	1574	NA	TA	1	TA	1	43
+chrM_1063_1598_5:0:0_5:0:0_f5/1_TG	chrM	1598	NA	TG	1	TG	1	44
+chrM_1605_2128_3:1:0_4:1:0_1ea/1_TT	chrM	1604	NA	TT	1	TT	1	45
+chrM_1065_1609_3:0:0_5:0:0_18e/1_TA	chrM	1609	NA	TA	1	TA	1	46
+chrM_1140_1619_1:0:0_4:0:0_74/1_TT	chrM	1619	NA	TT	1	TT	1	47
+chrM_1111_1626_4:0:0_2:0:0_186/1_AC	chrM	1626	NA	AC	1	AC	1	48
+chrM_1664_2135_0:1:0_3:1:0_179/1_TT	chrM	1663	NA	TT	1	TT	1	49
+chrM_1699_2147_1:0:0_7:0:0_10c/1_AA	chrM	1698	NA	AA	1	AA	1	50
+chrM_1706_2240_3:0:0_6:0:0_99/1_GT	chrM	1705	NA	GT	1	GT	1	51
+chrM_1756_2309_0:0:0_3:0:0_c3/1_AT	chrM	1755	NA	AT	1	AT	1	52
+chrM_1344_1758_4:0:0_3:1:0_75/1_TT	chrM	1758	NA	TT	1	TT	1	53
+chrM_1223_1777_5:0:0_6:1:0_42/1_TG	chrM	1777	NA	TG	1	TG	1	54
+chrM_1790_2351_4:0:0_4:0:0_f3/1_CC	chrM	1789	NA	CC	1	CC	1	55
+chrM_1308_1807_4:0:0_4:1:0_45/1_TA	chrM	1807	NA	TA	1	TA	1	56
+chrM_1814_2315_6:0:0_3:0:0_12d/1_AA	chrM	1813	NA	AA	1	AA	1	57
+chrM_1862_2304_4:0:0_1:0:0_19d/1_AA	chrM	1861	NA	AA	1	AA	1	58
+chrM_1363_1869_5:0:0_3:1:0_aa/1_TA	chrM	1869	NA	TA	1	TA	1	59
+chrM_1363_1887_2:0:0_3:0:0_d3/1_CA	chrM	1887	NA	CA	1	CA	1	60
+chrM_1428_1904_7:0:0_1:0:0_1b0/1_AC	chrM	1904	NA	AC	1	AC	1	61
+chrM_1480_1975_4:0:0_6:0:0_cd/1_CT	chrM	1975	NA	CT	1	CT	1	62
+chrM_1998_2552_3:0:0_2:0:0_35/1_AC	chrM	1997	NA	AC	1	AC	1	63
+chrM_1427_2035_6:0:0_1:0:0_7d/1_TA	chrM	2035	NA	TA	1	TA	1	64
+chrM_2065_2529_4:1:0_2:0:0_69/1_CG	chrM	2064	NA	CG	1	CG	1	65
+chrM_2079_2546_5:1:0_2:0:0_37/1_TA	chrM	2078	NA	TA	1	TA	1	66
+chrM_1576_2102_2:1:0_1:0:0_3/1_CT	chrM	2102	NA	CT	1	CT	1	67
+chrM_2118_2553_2:0:0_6:0:0_e6/1_CC	chrM	2117	NA	CC	1	CC	1	68
+chrM_1707_2180_3:0:0_2:0:0_152/1_TT	chrM	2180	NA	TT	1	TT	1	69
+chrM_1950_2421_3:0:0_3:0:0_13/1_TC	chrM	2421	NA	TC	1	TC	1	70
+chrM_2426_2953_5:0:0_5:0:0_83/1_AT	chrM	2425	NA	AT	1	AT	1	71
+chrM_2497_3082_1:0:0_6:0:0_1a4/1_AG	chrM	2496	NA	AG	1	AG	1	72
+chrM_2021_2503_3:1:0_4:0:0_4d/1_AC	chrM	2503	NA	AC	1	AC	1	73
+chrM_2510_3002_4:0:0_1:0:0_1d/1_AA	chrM	2509	NA	AA	1	AA	1	74
+chrM_2528_3123_6:1:0_4:0:0_122/1_AT	chrM	2527	NA	AT	1	AT	1	75
+chrM_2646_3108_4:1:0_3:0:0_68/1_GA	chrM	2645	NA	GA	1	GA	1	76
+chrM_2063_2659_1:1:0_8:0:0_93/1_GG	chrM	2659	NA	GG	1	GG	1	77
+chrM_2160_2679_2:0:0_4:0:0_177/1_TC	chrM	2679	NA	TC	1	TC	1	78
+chrM_2823_3302_7:0:0_9:0:0_de/1_CC	chrM	2822	NA	CC	1	CC	1	79
+chrM_2441_2926_5:0:0_3:0:0_25/1_AA	chrM	2926	NA	AA	1	AA	1	80
+chrM_2958_3490_6:0:0_5:1:0_192/1_TT	chrM	2957	NA	TT	1	TT	1	81
+chrM_2988_3473_2:0:0_4:1:0_c6/1_GT	chrM	2987	NA	GT	1	GT	1	82
+chrM_3032_3426_3:0:0_3:1:0_17c/1_AG	chrM	3031	NA	AG	1	AG	1	83
+chrM_2563_3061_1:1:0_3:0:0_70/1_GG	chrM	3061	NA	GG	1	GG	1	84
+chrM_2692_3152_1:1:0_4:0:0_5d/1_TC	chrM	3152	NA	TC	1	TC	1	85
+chrM_2612_3153_2:1:0_1:0:0_1df/1_AT	chrM	3153	NA	AT	1	AT	1	86
+chrM_3202_3692_4:0:0_2:0:0_95/1_AA	chrM	3201	NA	AA	1	AA	1	87
+chrM_2733_3206_4:0:0_1:0:0_4e/1_GT	chrM	3206	NA	GT	1	GT	1	88
+chrM_2706_3256_4:0:0_9:0:0_16e/1_GA	chrM	3256	NA	GA	1	GA	1	89
+chrM_2864_3323_4:0:0_5:0:0_fb/1_CT	chrM	3323	NA	CT	1	CT	1	90
+chrM_2856_3324_2:0:0_6:0:0_4/1_GC	chrM	3324	NA	GC	1	GC	1	91
+chrM_2902_3333_5:0:0_3:0:0_4a/1_CC	chrM	3333	NA	CC	1	CC	1	92
+chrM_2890_3410_3:0:0_6:1:0_1b5/1_TA	chrM	3410	NA	TA	1	TA	1	93
+chrM_2875_3422_5:0:0_7:1:0_c5/1_GG	chrM	3422	NA	GG	1	GG	1	94
+chrM_2890_3430_4:0:0_8:1:0_19a/1_TT	chrM	3430	NA	TT	1	TT	1	95
+chrM_2949_3443_10:0:0_6:1:0_139/1_CT	chrM	3443	NA	CT	1	CT	1	96
+chrM_2872_3457_8:0:0_3:1:0_134/1_TG	chrM	3457	NA	TG	1	TG	1	97
+chrM_2948_3460_5:0:0_7:1:0_1c1/1_TG	chrM	3460	NA	TG	1	TG	1	98
+chrM_3015_3496_4:0:0_5:1:0_137/1_AT	chrM	3496	NA	AT	1	AT	1	99
+chrM_2965_3521_2:0:0_2:1:0_eb/1_TA	chrM	3521	NA	TA	1	TA	1	100
+chrM_3561_4058_2:0:0_2:0:0_14d/1_TG	chrM	3560	NA	TG	1	TG	1	101
+chrM_3590_4068_6:0:0_6:1:0_b8/1_GG	chrM	3589	NA	GG	1	GG	1	102
+chrM_3123_3605_5:0:0_4:0:0_14/1_AG	chrM	3605	NA	AG	1	AG	1	103
+chrM_3158_3635_7:0:0_0:0:0_1c/1_AG	chrM	3635	NA	AG	1	AG	1	104
+chrM_3253_3640_6:1:0_8:0:0_10a/1_GT	chrM	3640	NA	GT	1	GT	1	105
+chrM_3663_4221_4:0:0_1:0:0_1a9/1_TA	chrM	3662	NA	TA	1	TA	1	106
+chrM_3679_4214_3:1:0_4:0:0_54/1_AG	chrM	3678	NA	AG	1	AG	1	107
+chrM_3688_4175_3:1:0_8:0:0_fd/1_AA	chrM	3687	NA	AA	1	AA	1	108
+chrM_3216_3691_4:1:0_4:0:0_110/1_TT	chrM	3691	NA	TT	1	TT	1	109
+chrM_3701_4211_4:0:0_3:0:0_e0/1_TA	chrM	3700	NA	TA	1	TA	1	110
+chrM_3213_3703_4:1:0_6:0:0_199/1_AG	chrM	3703	NA	AG	1	AG	1	111
+chrM_3738_4170_4:1:0_3:0:0_3b/1_CA	chrM	3737	NA	CA	1	CA	1	112
+chrM_3752_4208_9:1:0_5:0:0_11f/1_CA	chrM	3751	NA	CA	1	CA	1	113
+chrM_3171_3761_4:0:0_6:0:0_38/1_AT	chrM	3761	NA	AT	1	AT	1	114
+chrM_3213_3785_3:1:0_10:0:0_ed/1_GT	chrM	3785	NA	GT	1	GT	1	115
+chrM_3793_4298_6:0:0_5:0:0_51/1_TC	chrM	3792	NA	TC	1	TC	1	116
+chrM_3805_4310_4:1:0_3:0:0_161/1_TA	chrM	3804	NA	TA	1	TA	1	117
+chrM_3817_4309_3:1:0_3:0:0_86/1_AT	chrM	3816	NA	AT	1	AT	1	118
+chrM_3863_4305_5:0:0_5:0:0_e9/1_AC	chrM	3862	NA	AC	1	AC	1	119
+chrM_3399_3957_5:1:0_2:1:0_43/1_AT	chrM	3957	NA	AT	1	AT	1	120
+chrM_3449_3959_6:0:0_3:1:0_16a/1_GA	chrM	3959	NA	GA	1	GA	1	121
+chrM_3971_4563_4:0:0_5:0:0_150/1_GG	chrM	3970	NA	GG	1	GG	1	122
+chrM_3541_3989_4:0:0_2:1:0_90/1_GA	chrM	3989	NA	GA	1	GA	1	123
+chrM_3597_3996_3:0:0_7:0:0_62/1_GT	chrM	3996	NA	GT	1	GT	1	124
+chrM_3450_3998_6:0:0_2:0:0_1ba/1_GC	chrM	3998	NA	GC	1	GC	1	125
+chrM_3637_4061_5:0:0_2:1:0_111/1_AT	chrM	4061	NA	AT	1	AT	1	126
+chrM_4068_4556_3:0:0_3:0:0_6a/1_CA	chrM	4067	NA	CA	1	CA	1	127
+chrM_4074_4533_2:0:0_2:0:0_9e/1_TA	chrM	4073	NA	TA	1	TA	1	128
+chrM_4082_4621_7:0:0_3:0:0_198/1_AA	chrM	4081	NA	AA	1	AA	1	129
+chrM_4160_4692_5:0:0_4:1:0_1f0/1_AT	chrM	4159	NA	AT	1	AT	1	130
+chrM_4199_4751_2:0:0_1:1:0_15c/1_GC	chrM	4198	NA	GC	1	GC	1	131
+chrM_4229_4769_4:0:0_6:0:0_cc/1_GA	chrM	4228	NA	GA	1	GA	1	132
+chrM_3770_4283_1:0:0_8:0:0_13f/1_AA	chrM	4283	NA	AA	1	AA	1	133
+chrM_4374_4823_2:0:0_5:0:0_dc/1_TA	chrM	4373	NA	TA	1	TA	1	134
+chrM_4382_4881_2:0:0_5:0:0_195/1_AT	chrM	4381	NA	AT	1	AT	1	135
+chrM_4384_4922_5:0:0_4:1:0_1e1/1_TA	chrM	4383	NA	TA	1	TA	1	136
+chrM_4056_4522_5:0:0_4:0:0_e3/1_AT	chrM	4522	NA	AT	1	AT	1	137
+chrM_4553_5058_6:0:0_4:0:0_a3/1_AT	chrM	4552	NA	AT	1	AT	1	138
+chrM_4565_5190_3:0:0_4:0:0_19c/1_AC	chrM	4564	NA	AC	1	AC	1	139
+chrM_4106_4574_6:0:0_2:0:0_64/1_TC	chrM	4574	NA	TC	1	TC	1	140
+chrM_4705_5072_2:0:0_2:1:0_b7/1_TT	chrM	4704	NA	TT	1	TT	1	141
+chrM_4724_5279_5:0:0_8:0:0_2e/1_AA	chrM	4723	NA	AA	1	AA	1	142
+chrM_4840_5344_4:1:0_4:0:0_3c/1_GT	chrM	4839	NA	GT	1	GT	1	143
+chrM_4509_4974_5:0:0_3:0:0_ea/1_CT	chrM	4974	NA	CT	1	CT	1	144
+chrM_4444_5010_5:1:0_5:1:0_119/1_TG	chrM	5010	NA	TG	1	TG	1	145
+chrM_4491_5013_5:1:0_6:1:0_1b/1_GA	chrM	5013	NA	GA	1	GA	1	146
+chrM_4490_5017_8:0:0_4:0:0_8d/1_AG	chrM	5017	NA	AG	1	AG	1	147
+chrM_5058_5566_6:0:0_5:0:0_1c6/1_AG	chrM	5057	NA	AG	1	AG	1	148
+chrM_5062_5522_7:0:0_5:0:0_e8/1_TC	chrM	5061	NA	TC	1	TC	1	149
+chrM_4566_5086_5:1:0_6:1:0_19/1_AT	chrM	5086	NA	AT	1	AT	1	150
+chrM_5119_5706_5:0:0_4:0:0_140/1_TG	chrM	5118	NA	TG	1	TG	1	151
+chrM_5121_5635_3:0:0_3:0:0_165/1_AG	chrM	5120	NA	AG	1	AG	1	152
+chrM_5166_5697_4:0:0_4:0:0_ec/1_TC	chrM	5165	NA	TC	1	TC	1	153
+chrM_4583_5175_2:0:0_4:0:0_10d/1_TT	chrM	5175	NA	TT	1	TT	1	154
+chrM_5184_5616_6:0:0_4:0:0_1ee/1_AA	chrM	5183	NA	AA	1	AA	1	155
+chrM_4713_5198_5:0:0_1:0:0_f0/1_TA	chrM	5198	NA	TA	1	TA	1	156
+chrM_4833_5239_3:1:0_3:0:0_56/1_AG	chrM	5239	NA	AG	1	AG	1	157
+chrM_5292_5797_3:0:0_3:0:0_130/1_CC	chrM	5291	NA	CC	1	CC	1	158
+chrM_5315_5855_2:0:0_5:0:0_136/1_TA	chrM	5314	NA	TA	1	TA	1	159
+chrM_5342_5909_5:0:0_5:0:0_5/1_GC	chrM	5341	NA	GC	1	GC	1	160
+chrM_4886_5348_5:0:0_3:0:0_d7/1_TC	chrM	5348	NA	TC	1	TC	1	161
+chrM_5355_5797_0:0:0_5:0:0_1d3/1_TA	chrM	5354	NA	TA	1	TA	1	162
+chrM_5362_5890_4:0:0_3:0:0_1dd/1_AT	chrM	5361	NA	AT	1	AT	1	163
+chrM_4974_5463_3:0:0_4:0:0_8/1_CT	chrM	5463	NA	CT	1	CT	1	164
+chrM_5125_5611_2:0:0_2:0:0_11b/1_AT	chrM	5611	NA	AT	1	AT	1	165
+chrM_5163_5634_8:0:0_3:0:0_1bf/1_TT	chrM	5634	NA	TT	1	TT	1	166
+chrM_5185_5662_3:0:0_4:0:0_a4/1_AT	chrM	5662	NA	AT	1	AT	1	167
+chrM_5683_6115_5:0:0_5:0:0_b5/1_CT	chrM	5682	NA	CT	1	CT	1	168
+chrM_5306_5717_1:0:0_4:0:0_1ab/1_TT	chrM	5717	NA	TT	1	TT	1	169
+chrM_5181_5752_4:0:0_4:0:0_128/1_GT	chrM	5752	NA	GT	1	GT	1	170
+chrM_5828_6286_5:0:0_4:0:0_17f/1_TT	chrM	5827	NA	TT	1	TT	1	171
+chrM_5310_5842_3:0:0_6:0:0_1d0/1_TA	chrM	5842	NA	TA	1	TA	1	172
+chrM_5845_6332_2:0:0_3:0:0_db/1_AA	chrM	5844	NA	AA	1	AA	1	173
+chrM_5856_6361_4:0:0_4:0:0_1d4/1_AA	chrM	5855	NA	AA	1	AA	1	174
+chrM_5410_5865_9:0:0_5:0:0_57/1_TA	chrM	5865	NA	TA	1	TA	1	175
+chrM_5411_5901_3:0:0_2:0:0_197/1_TT	chrM	5901	NA	TT	1	TT	1	176
+chrM_5423_5960_2:0:0_6:0:0_1ca/1_TA	chrM	5960	NA	TA	1	TA	1	177
+chrM_5461_5962_4:0:0_8:0:0_1a8/1_AT	chrM	5962	NA	AT	1	AT	1	178
+chrM_5990_6598_5:0:0_2:0:0_16f/1_TC	chrM	5989	NA	TC	1	TC	1	179
+chrM_6047_6502_2:0:0_6:0:0_1f3/1_CA	chrM	6046	NA	CA	1	CA	1	180
+chrM_6078_6610_7:0:0_6:0:0_29/1_GG	chrM	6077	NA	GG	1	GG	1	181
+chrM_5565_6084_3:0:0_3:0:0_194/1_TC	chrM	6084	NA	TC	1	TC	1	182
+chrM_6087_6574_4:0:0_2:0:0_12e/1_CC	chrM	6086	NA	CC	1	CC	1	183
+chrM_5710_6256_2:0:0_6:0:0_12/1_CT	chrM	6256	NA	CT	2	CT	2	184
+chrM_5852_6256_2:0:0_4:0:0_58/1_CT	chrM	6256	NA	CT	2	CT	2	184
+chrM_5770_6275_1:0:0_3:0:0_a6/1_AG	chrM	6275	NA	AG	1	AG	1	185
+chrM_5839_6288_5:0:0_5:0:0_1c0/1_GG	chrM	6288	NA	GG	1	GG	1	186
+chrM_5829_6293_3:0:0_1:0:0_bd/1_GC	chrM	6293	NA	GC	1	GC	1	187
+chrM_5793_6362_4:0:0_5:0:0_1a5/1_CC	chrM	6362	NA	CC	1	CC	1	188
+chrM_5942_6425_5:0:0_1:0:0_16d/1_AC	chrM	6425	NA	AC	1	AC	1	189
+chrM_5989_6468_5:0:0_1:0:0_16c/1_TG	chrM	6468	NA	TG	1	TG	1	190
+chrM_5994_6492_3:0:0_3:0:0_153/1_TA	chrM	6492	NA	TA	1	TA	1	191
+chrM_6011_6514_3:0:0_7:0:0_1ef/1_TG	chrM	6514	NA	TG	1	TG	1	192
+chrM_6134_6610_4:0:0_2:0:0_d6/1_GG	chrM	6610	NA	GG	1	GG	1	193
+chrM_6073_6613_4:0:0_6:0:0_e/1_CT	chrM	6613	NA	CT	1	CT	1	194
+chrM_6655_7146_3:0:0_6:0:0_55/1_TT	chrM	6654	NA	TT	1	TT	1	195
+chrM_6155_6684_4:0:0_6:0:0_156/1_GG	chrM	6684	NA	GG	1	GG	1	196
+chrM_6698_7198_5:0:1_4:0:0_19e/1_AT	chrM	6697	NA	AT	1	AT	1	197
+chrM_6222_6744_5:0:0_2:0:0_116/1_CA	chrM	6744	NA	CA	1	CA	1	198
+chrM_6258_6750_3:0:0_2:0:0_b0/1_TT	chrM	6750	NA	TT	1	TT	1	199
+chrM_6331_6811_6:0:0_5:0:0_b6/1_GT	chrM	6811	NA	GT	1	GT	1	200
+chrM_6370_6852_5:0:0_4:0:0_5c/1_AT	chrM	6852	NA	AT	1	AT	1	201
+chrM_6507_6920_3:0:0_5:0:1_1d2/1_AA	chrM	6920	NA	AA	1	AA	1	202
+chrM_6479_6981_2:0:0_5:0:1_18f/1_TG	chrM	6981	NA	TG	1	TG	1	203
+chrM_6530_7006_2:0:0_2:0:1_101/1_TA	chrM	7006	NA	TA	1	TA	1	204
+chrM_7048_7515_9:0:0_4:0:0_7e/1_AT	chrM	7047	NA	AT	1	AT	1	205
+chrM_7081_7575_3:0:0_0:0:0_10/1_CC	chrM	7080	NA	CC	1	CC	1	206
+chrM_7119_7629_5:0:0_7:0:0_1cf/1_GC	chrM	7118	NA	GC	1	GC	1	207
+chrM_7270_7705_10:0:0_4:0:0_b4/1_GC	chrM	7269	NA	GC	1	GC	1	208
+chrM_7272_7803_5:0:0_4:0:0_fe/1_TA	chrM	7271	NA	TA	1	TA	1	209
+chrM_6787_7349_2:0:1_1:0:0_141/1_TG	chrM	7349	NA	TG	1	TG	1	210
+chrM_7365_7794_3:0:0_5:0:0_1c7/1_GA	chrM	7364	NA	GA	1	GA	1	211
+chrM_7413_7973_6:0:0_5:0:0_158/1_TC	chrM	7412	NA	TC	1	TC	1	212
+chrM_6786_7414_0:0:1_6:0:0_1b6/1_AT	chrM	7414	NA	AT	1	AT	1	213
+chrM_7472_7886_4:0:0_4:0:0_8b/1_GG	chrM	7471	NA	GG	1	GG	1	214
+chrM_7505_7965_4:0:0_2:0:0_3a/1_CT	chrM	7504	NA	CT	1	CT	1	215
+chrM_7095_7547_2:0:0_3:0:0_149/1_GG	chrM	7547	NA	GG	1	GG	1	216
+chrM_7564_8021_3:0:0_2:0:0_1/1_AA	chrM	7563	NA	AA	1	AA	1	217
+chrM_7067_7564_4:0:0_5:0:0_107/1_AA	chrM	7564	NA	AA	1	AA	1	218
+chrM_7016_7567_4:0:0_5:0:0_27/1_TT	chrM	7567	NA	TT	1	TT	1	219
+chrM_7200_7687_2:0:0_6:0:0_c/1_TA	chrM	7687	NA	TA	1	TA	1	220
+chrM_7267_7793_1:0:0_4:0:0_41/1_AC	chrM	7793	NA	AC	1	AC	1	221
+chrM_7797_8230_4:0:0_5:0:0_f6/1_GC	chrM	7796	NA	GC	1	GC	1	222
+chrM_7821_8285_3:0:0_3:0:0_1f1/1_TT	chrM	7820	NA	TT	1	TT	1	223
+chrM_7859_8392_2:0:0_3:0:0_114/1_TT	chrM	7858	NA	TT	1	TT	1	224
+chrM_7881_8395_3:0:0_2:0:0_173/1_CT	chrM	7880	NA	CT	1	CT	1	225
+chrM_7339_7893_4:0:0_3:0:0_19b/1_TA	chrM	7893	NA	TA	1	TA	1	226
+chrM_7424_7912_5:0:0_4:0:0_ba/1_GG	chrM	7912	NA	GG	1	GG	1	227
+chrM_7467_7949_6:0:0_9:0:0_7f/1_AT	chrM	7949	NA	AT	1	AT	1	228
+chrM_7956_8469_8:0:0_5:1:0_14a/1_AA	chrM	7955	NA	AA	1	AA	1	229
+chrM_7963_8508_6:0:0_5:1:0_73/1_AC	chrM	7962	NA	AC	1	AC	1	230
+chrM_8018_8547_2:0:0_2:1:0_39/1_TA	chrM	8017	NA	TA	1	TA	1	231
+chrM_8039_8593_3:0:0_3:1:0_71/1_AG	chrM	8038	NA	AG	1	AG	1	232
+chrM_7594_8044_3:0:0_5:0:0_e1/1_TT	chrM	8044	NA	TT	1	TT	1	233
+chrM_7570_8062_4:0:0_1:0:0_1ed/1_TC	chrM	8062	NA	TC	1	TC	1	234
+chrM_7576_8099_6:0:0_4:0:0_1bc/1_GT	chrM	8099	NA	GT	1	GT	1	235
+chrM_8114_8625_4:0:0_3:1:0_17a/1_AT	chrM	8113	NA	AT	1	AT	1	236
+chrM_7655_8131_5:0:0_7:0:0_19f/1_CG	chrM	8131	NA	CG	1	CG	1	237
+chrM_8139_8619_2:0:0_5:1:0_166/1_CC	chrM	8138	NA	CC	1	CC	1	238
+chrM_7825_8191_3:0:0_2:0:0_1ec/1_CT	chrM	8191	NA	CT	1	CT	1	239
+chrM_7641_8206_4:0:0_5:0:0_13a/1_GT	chrM	8206	NA	GT	1	GT	1	240
+chrM_7613_8208_2:0:0_5:0:0_52/1_AT	chrM	8208	NA	AT	1	AT	1	241
+chrM_7752_8261_10:0:0_5:0:0_142/1_GA	chrM	8261	NA	GA	1	GA	1	242
+chrM_7739_8294_7:0:0_2:0:0_144/1_CC	chrM	8294	NA	CC	1	CC	1	243
+chrM_8303_8710_5:1:0_6:0:0_87/1_CA	chrM	8302	NA	CA	1	CA	1	244
+chrM_8309_8842_3:1:0_5:0:0_115/1_GA	chrM	8308	NA	GA	1	GA	1	245
+chrM_7965_8408_4:0:0_0:0:0_143/1_CC	chrM	8408	NA	CC	1	CC	1	246
+chrM_8031_8436_7:0:0_5:0:0_c0/1_TC	chrM	8436	NA	TC	1	TC	1	247
+chrM_8438_8973_3:1:0_2:0:0_1d5/1_AA	chrM	8437	NA	AA	1	AA	1	248
+chrM_8511_8920_4:0:0_3:0:0_ca/1_AT	chrM	8510	NA	AT	1	AT	1	249
+chrM_8532_8954_3:0:0_4:0:0_cb/1_TT	chrM	8531	NA	TT	1	TT	1	250
+chrM_8565_8973_6:0:0_1:0:0_66/1_GA	chrM	8564	NA	GA	1	GA	1	251
+chrM_8575_9003_7:0:0_2:0:0_c7/1_TA	chrM	8574	NA	TA	1	TA	1	252
+chrM_8125_8594_2:0:0_2:1:0_187/1_TA	chrM	8594	NA	TA	1	TA	1	253
+chrM_8144_8650_4:0:0_3:1:0_14b/1_GG	chrM	8650	NA	GG	1	GG	1	254
+chrM_8117_8669_3:0:0_5:0:0_16b/1_AG	chrM	8669	NA	AG	1	AG	1	255
+chrM_8296_8802_4:1:0_9:0:0_1db/1_GC	chrM	8802	NA	GC	1	GC	1	256
+chrM_8807_9277_3:0:0_4:0:1_108/1_TG	chrM	8806	NA	TG	1	TG	1	257
+chrM_8825_9275_3:0:0_5:0:1_1da/1_AA	chrM	8824	NA	AA	1	AA	1	258
+chrM_8868_9400_4:0:0_3:0:1_1e8/1_AC	chrM	8867	NA	AC	1	AC	1	259
+chrM_8885_9340_4:0:0_5:0:1_c8/1_TT	chrM	8884	NA	TT	1	TT	1	260
+chrM_8938_9405_8:0:0_2:0:1_1c3/1_CG	chrM	8937	NA	CG	1	CG	1	261
+chrM_8396_8947_8:1:0_2:0:0_155/1_AC	chrM	8947	NA	AC	1	AC	1	262
+chrM_8461_8951_7:0:0_1:0:0_1cb/1_TG	chrM	8951	NA	TG	1	TG	1	263
+chrM_8987_9581_3:0:0_3:0:0_1cd/1_TA	chrM	8986	NA	TA	1	TA	1	264
+chrM_9007_9456_2:0:0_4:0:0_23/1_AA	chrM	9006	NA	AA	1	AA	1	265
+chrM_8520_9009_2:0:0_7:0:0_193/1_TA	chrM	9009	NA	TA	1	TA	1	266
+chrM_8547_9016_5:0:0_4:0:0_32/1_TG	chrM	9016	NA	TG	1	TG	1	267
+chrM_9075_9551_5:0:1_3:0:0_4b/1_CC	chrM	9074	NA	CC	1	CC	1	268
+chrM_9102_9561_3:0:1_3:0:0_2b/1_TA	chrM	9101	NA	TA	1	TA	1	269
+chrM_9113_9686_4:0:1_1:0:0_78/1_CA	chrM	9112	NA	CA	1	CA	1	270
+chrM_8621_9133_8:0:0_5:0:0_145/1_GC	chrM	9133	NA	GC	1	GC	1	271
+chrM_9166_9651_6:0:1_4:0:0_15b/1_TT	chrM	9165	NA	TT	1	TT	1	272
+chrM_9168_9638_4:0:1_5:0:0_175/1_TC	chrM	9167	NA	TC	1	TC	1	273
+chrM_9172_9645_0:0:1_5:0:0_e7/1_CA	chrM	9171	NA	CA	1	CA	1	274
+chrM_9233_9739_3:0:1_5:0:0_91/1_CT	chrM	9232	NA	CT	1	CT	1	275
+chrM_9249_9749_6:0:1_2:0:0_12c/1_TA	chrM	9247	NA	TA	1	TA	1	276
+chrM_9338_9899_1:0:0_2:0:0_a8/1_TT	chrM	9337	NA	TT	1	TT	1	277
+chrM_8914_9385_2:0:0_3:0:1_135/1_GC	chrM	9385	NA	GC	1	GC	1	278
+chrM_8829_9414_6:0:0_2:0:1_1bd/1_GT	chrM	9414	NA	GT	1	GT	1	279
+chrM_8916_9457_5:0:0_5:0:0_167/1_AC	chrM	9457	NA	AC	1	AC	1	280
+chrM_8970_9471_5:0:0_6:0:0_1ac/1_CT	chrM	9471	NA	CT	1	CT	1	281
+chrM_8928_9477_3:0:0_6:0:0_48/1_GG	chrM	9477	NA	GG	2	GG	2	282
+chrM_8929_9477_7:0:0_5:0:0_f9/1_GG	chrM	9477	NA	GG	2	GG	2	282
+chrM_9536_10046_5:0:0_1:0:0_d5/1_TA	chrM	9535	NA	TA	1	TA	1	283
+chrM_9579_10013_2:0:0_3:0:0_9/1_AC	chrM	9578	NA	AC	1	AC	1	284
+chrM_9672_10188_5:0:0_9:0:0_11/1_CG	chrM	9671	NA	CG	1	CG	1	285
+chrM_9689_10220_2:0:0_2:0:0_151/1_AA	chrM	9688	NA	AA	1	AA	1	286
+chrM_9159_9700_2:0:1_4:0:0_2/1_GA	chrM	9700	NA	GA	1	GA	1	287
+chrM_9103_9709_4:0:1_5:0:0_24/1_AT	chrM	9709	NA	AT	1	AT	1	288
+chrM_9768_10236_5:0:0_4:0:0_1d9/1_GT	chrM	9767	NA	GT	1	GT	1	289
+chrM_9271_9836_3:0:0_2:0:0_77/1_CT	chrM	9836	NA	CT	1	CT	1	290
+chrM_9847_10370_4:0:0_5:0:0_bc/1_CA	chrM	9846	NA	CA	1	CA	1	291
+chrM_9856_10428_4:0:0_4:1:0_120/1_GC	chrM	9855	NA	GC	1	GC	1	292
+chrM_9866_10380_3:0:0_5:0:0_8f/1_CC	chrM	9865	NA	CC	1	CC	1	293
+chrM_9895_10412_1:0:0_7:1:0_7a/1_AT	chrM	9894	NA	AT	1	AT	1	294
+chrM_9904_10380_7:0:0_3:0:0_1e0/1_TG	chrM	9903	NA	TG	1	TG	1	295
+chrM_9917_10459_5:0:0_6:0:0_9c/1_CG	chrM	9916	NA	CG	1	CG	1	296
+chrM_9489_9919_2:0:0_2:0:0_b9/1_GG	chrM	9919	NA	GG	1	GG	1	297
+chrM_9452_9927_4:0:0_5:0:0_190/1_GA	chrM	9927	NA	GA	1	GA	1	298
+chrM_9932_10484_3:0:0_5:0:0_148/1_CT	chrM	9931	NA	CT	1	CT	1	299
+chrM_9983_10519_5:0:0_2:0:0_dd/1_AC	chrM	9982	NA	AC	1	AC	1	300
+chrM_9402_10032_4:0:0_5:0:0_a2/1_GG	chrM	10032	NA	GG	1	GG	1	301
+chrM_10074_10591_1:0:0_0:0:0_14c/1_TA	chrM	10073	NA	TA	1	TA	1	302
+chrM_10103_10594_8:0:0_6:1:0_1e9/1_AT	chrM	10102	NA	AT	1	AT	1	303
+chrM_10141_10683_4:0:0_4:0:0_6f/1_TA	chrM	10140	NA	TA	1	TA	1	304
+chrM_10226_10692_5:1:0_4:0:0_103/1_CT	chrM	10225	NA	CT	1	CT	1	305
+chrM_9669_10227_5:0:0_4:0:0_4f/1_TG	chrM	10227	NA	TG	1	TG	1	306
+chrM_9735_10257_0:0:0_7:0:0_b2/1_TA	chrM	10257	NA	TA	1	TA	1	307
+chrM_10326_10838_5:0:0_3:0:0_f2/1_TT	chrM	10325	NA	TT	1	TT	1	308
+chrM_9825_10334_2:0:0_6:0:0_123/1_AC	chrM	10334	NA	AC	1	AC	1	309
+chrM_10009_10476_0:0:0_5:0:0_176/1_CA	chrM	10476	NA	CA	1	CA	1	310
+chrM_9995_10574_6:0:0_4:1:0_7c/1_GG	chrM	10574	NA	GG	1	GG	1	311
+chrM_10582_11133_4:0:0_3:0:0_21/1_GC	chrM	10581	NA	GC	1	GC	1	312
+chrM_10590_11016_2:0:0_6:0:0_81/1_AA	chrM	10589	NA	AA	1	AA	1	313
+chrM_10607_11150_5:0:0_2:0:0_8a/1_CC	chrM	10606	NA	CC	1	CC	1	314
+chrM_10041_10610_6:0:0_4:0:0_ef/1_GG	chrM	10610	NA	GG	1	GG	1	315
+chrM_10679_11090_2:0:0_6:0:0_1b4/1_GA	chrM	10678	NA	GA	1	GA	1	316
+chrM_10690_11211_4:0:0_3:0:0_184/1_AC	chrM	10689	NA	AC	1	AC	1	317
+chrM_10692_11227_2:0:0_4:0:0_49/1_TG	chrM	10691	NA	TG	1	TG	1	318
+chrM_10325_10814_5:1:0_6:0:0_129/1_GC	chrM	10814	NA	GC	1	GC	1	319
+chrM_10834_11259_4:0:0_3:0:0_47/1_GA	chrM	10833	NA	GA	1	GA	1	320
+chrM_10846_11368_1:0:0_6:0:0_fc/1_TG	chrM	10845	NA	TG	1	TG	1	321
+chrM_10850_11370_7:0:0_4:0:0_15e/1_TT	chrM	10849	NA	TT	1	TT	1	322
+chrM_10491_10996_4:0:0_6:0:0_1a6/1_AG	chrM	10996	NA	AG	1	AG	1	323
+chrM_11001_11542_4:0:0_9:0:0_15/1_GT	chrM	11000	NA	GT	1	GT	1	324
+chrM_11067_11640_2:0:0_7:0:0_d2/1_TT	chrM	11066	NA	TT	1	TT	1	325
+chrM_10600_11115_3:0:0_3:0:0_10f/1_TT	chrM	11115	NA	TT	1	TT	1	326
+chrM_11179_11645_6:0:1_1:0:0_181/1_TC	chrM	11178	NA	TC	1	TC	1	327
+chrM_10716_11197_6:0:0_5:0:0_67/1_CA	chrM	11197	NA	CA	1	CA	1	328
+chrM_10649_11218_5:0:0_8:0:0_50/1_GT	chrM	11218	NA	GT	1	GT	1	329
+chrM_10624_11233_2:0:0_3:0:0_2f/1_CT	chrM	11233	NA	CT	1	CT	1	330
+chrM_11239_11740_6:0:0_1:0:0_3e/1_CT	chrM	11238	NA	CT	1	CT	1	331
+chrM_10825_11310_5:0:0_6:0:0_1ce/1_TA	chrM	11310	NA	TA	1	TA	1	332
+chrM_11423_11976_7:0:0_3:0:0_189/1_GA	chrM	11422	NA	GA	1	GA	1	333
+chrM_11522_12121_5:0:0_2:0:0_13d/1_GG	chrM	11521	NA	GG	1	GG	1	334
+chrM_11080_11521_6:0:0_7:0:0_ff/1_GT	chrM	11521	NA	GT	1	GT	1	335
+chrM_11076_11558_1:0:0_3:0:0_92/1_AT	chrM	11558	NA	AT	1	AT	1	336
+chrM_11197_11674_1:0:0_3:0:0_c1/1_TT	chrM	11674	NA	TT	1	TT	1	337
+chrM_11227_11680_5:0:1_3:0:0_76/1_GT	chrM	11680	NA	GT	1	GT	1	338
+chrM_11759_12257_5:0:0_8:0:0_9b/1_TT	chrM	11758	NA	TT	1	TT	1	339
+chrM_11236_11767_1:0:0_2:0:0_e2/1_TT	chrM	11767	NA	TT	1	TT	1	340
+chrM_11780_12326_4:0:0_7:0:0_10e/1_GG	chrM	11779	NA	GG	1	GG	1	341
+chrM_11789_12313_6:0:0_5:0:0_1f2/1_CG	chrM	11788	NA	CG	1	CG	1	342
+chrM_11815_12366_6:0:0_1:0:0_1be/1_AA	chrM	11814	NA	AA	1	AA	1	343
+chrM_11829_12278_5:0:0_8:0:0_11a/1_CA	chrM	11828	NA	CA	1	CA	1	344
+chrM_11834_12212_5:0:0_4:0:0_131/1_CC	chrM	11833	NA	CC	1	CC	1	345
+chrM_11305_11834_4:0:0_5:0:0_5e/1_TA	chrM	11834	NA	TA	1	TA	1	346
+chrM_11315_11842_2:0:0_8:0:0_126/1_TA	chrM	11842	NA	TA	1	TA	1	347
+chrM_11890_12397_8:0:0_2:0:0_30/1_CC	chrM	11889	NA	CC	1	CC	1	348
+chrM_11898_12351_4:0:0_1:0:0_a9/1_AC	chrM	11897	NA	AC	1	AC	1	349
+chrM_11902_12409_3:0:0_4:0:0_ad/1_AA	chrM	11901	NA	AA	1	AA	1	350
+chrM_11932_12361_4:0:0_6:0:0_44/1_TC	chrM	11931	NA	TC	1	TC	1	351
+chrM_11938_12488_7:0:0_6:0:0_ee/1_GG	chrM	11937	NA	GG	1	GG	1	352
+chrM_11949_12385_7:0:0_5:0:0_118/1_TT	chrM	11948	NA	TT	1	TT	1	353
+chrM_11551_11956_7:0:0_5:0:0_d0/1_CT	chrM	11956	NA	CT	1	CT	1	354
+chrM_11468_11961_6:0:0_4:0:0_c9/1_TA	chrM	11961	NA	TA	1	TA	1	355
+chrM_11495_11994_2:0:0_5:0:0_100/1_AG	chrM	11994	NA	AG	1	AG	1	356
+chrM_11413_12020_5:0:0_2:0:0_4c/1_AG	chrM	12020	NA	AG	1	AG	1	357
+chrM_11598_12060_3:0:0_5:0:0_89/1_AT	chrM	12060	NA	AT	1	AT	1	358
+chrM_11616_12104_4:0:0_7:0:0_6/1_TG	chrM	12104	NA	TG	1	TG	1	359
+chrM_12150_12654_2:0:0_3:0:0_12b/1_CA	chrM	12149	NA	CA	1	CA	1	360
+chrM_12160_12669_8:0:0_2:0:0_1ae/1_CC	chrM	12159	NA	CC	1	CC	1	361
+chrM_11701_12198_5:0:0_2:0:0_96/1_AA	chrM	12198	NA	AA	1	AA	1	362
+chrM_11745_12199_2:0:0_3:0:0_7/1_CA	chrM	12199	NA	CA	1	CA	1	363
+chrM_11818_12273_4:0:0_4:0:0_196/1_TA	chrM	12273	NA	TA	1	TA	1	364
+chrM_11791_12301_5:0:0_6:0:0_17d/1_GA	chrM	12301	NA	GA	1	GA	1	365
+chrM_12330_12776_4:0:0_4:0:0_63/1_AT	chrM	12329	NA	AT	1	AT	1	366
+chrM_12336_12829_5:0:0_5:0:0_f/1_AC	chrM	12335	NA	AC	1	AC	1	367
+chrM_11746_12340_4:0:0_2:0:0_6c/1_GG	chrM	12340	NA	GG	1	GG	1	368
+chrM_12356_12830_4:0:0_5:0:0_104/1_AA	chrM	12355	NA	AA	1	AA	1	369
+chrM_12371_12852_6:0:0_5:0:0_28/1_CT	chrM	12370	NA	CT	1	CT	1	370
+chrM_12405_12863_2:0:0_3:0:0_154/1_AC	chrM	12404	NA	AC	1	AC	1	371
+chrM_12413_12965_5:0:0_6:0:0_174/1_AT	chrM	12412	NA	AT	1	AT	1	372
+chrM_12006_12431_4:0:0_4:0:0_15a/1_AT	chrM	12431	NA	AT	1	AT	1	373
+chrM_11969_12486_5:0:0_4:0:0_2a/1_AC	chrM	12486	NA	AC	1	AC	1	374
+chrM_12495_12966_1:0:0_3:0:0_18a/1_TT	chrM	12494	NA	TT	1	TT	1	375
+chrM_12089_12585_1:0:0_7:0:0_1e4/1_TT	chrM	12585	NA	TT	1	TT	1	376
+chrM_12621_13150_2:0:0_4:0:0_9a/1_CA	chrM	12620	NA	CA	1	CA	1	377
+chrM_12209_12659_3:0:0_3:0:0_1a7/1_GT	chrM	12659	NA	GT	1	GT	1	378
+chrM_12702_13164_4:0:0_3:0:0_88/1_AC	chrM	12701	NA	AC	1	AC	1	379
+chrM_12712_13263_5:0:0_6:0:0_1a3/1_AT	chrM	12711	NA	AT	1	AT	1	380
+chrM_12284_12729_4:0:0_4:0:0_61/1_TA	chrM	12729	NA	TA	1	TA	1	381
+chrM_12259_12743_4:0:0_2:0:0_1a2/1_TT	chrM	12743	NA	TT	1	TT	1	382
+chrM_12260_12784_5:0:0_2:0:0_6d/1_TG	chrM	12784	NA	TG	1	TG	1	383
+chrM_12316_12791_2:0:0_3:0:0_1d6/1_TT	chrM	12791	NA	TT	1	TT	1	384
+chrM_12262_12819_3:0:0_5:0:0_ce/1_AT	chrM	12819	NA	AT	1	AT	1	385
+chrM_12329_12832_4:0:0_4:0:0_1c5/1_TC	chrM	12832	NA	TC	1	TC	1	386
+chrM_12323_12847_3:0:0_3:0:0_163/1_GA	chrM	12847	NA	GA	1	GA	1	387
+chrM_12350_12855_4:0:0_3:0:0_3f/1_AG	chrM	12855	NA	AG	1	AG	1	388
+chrM_12495_12939_2:0:0_4:0:0_117/1_TC	chrM	12939	NA	TC	1	TC	1	389
+chrM_12949_13437_4:0:0_3:0:0_1a0/1_GG	chrM	12948	NA	GG	1	GG	1	390
+chrM_12449_12988_5:0:0_4:0:0_79/1_AA	chrM	12988	NA	AA	1	AA	1	391
+chrM_13032_13560_5:0:0_4:0:0_b1/1_GC	chrM	13031	NA	GC	1	GC	1	392
+chrM_12548_13045_4:0:0_3:0:0_be/1_TA	chrM	13045	NA	TA	1	TA	1	393
+chrM_12698_13119_5:0:0_3:0:0_a/1_GC	chrM	13119	NA	GC	1	GC	1	394
+chrM_12657_13157_3:0:0_2:0:0_a0/1_TG	chrM	13157	NA	TG	1	TG	1	395
+chrM_12629_13160_5:0:0_5:0:0_125/1_GG	chrM	13160	NA	GG	1	GG	1	396
+chrM_12642_13191_2:0:0_5:0:0_1dc/1_AT	chrM	13191	NA	AT	1	AT	1	397
+chrM_13236_13695_2:0:0_9:0:0_1c8/1_TT	chrM	13235	NA	TT	1	TT	1	398
+chrM_13271_13696_3:0:0_5:0:0_188/1_AC	chrM	13270	NA	AC	1	AC	1	399
+chrM_12763_13284_4:0:0_1:0:0_d1/1_AG	chrM	13284	NA	AG	1	AG	1	400
+chrM_13300_13825_6:0:0_3:0:0_ac/1_AA	chrM	13299	NA	AA	2	AA	2	401
+chrM_13300_13872_3:0:0_5:1:0_c2/1_AA	chrM	13299	NA	AA	2	AA	2	401
+chrM_12845_13364_2:0:0_5:0:0_109/1_AG	chrM	13364	NA	AG	1	AG	1	402
+chrM_13502_13977_3:0:0_5:0:0_ae/1_TT	chrM	13501	NA	TT	1	TT	1	403
+chrM_13627_14137_3:0:0_3:0:0_162/1_AC	chrM	13626	NA	AC	1	AC	1	404
+chrM_13055_13651_7:0:0_3:0:0_8c/1_TA	chrM	13651	NA	TA	1	TA	1	405
+chrM_13676_14200_0:1:0_4:0:0_2d/1_CA	chrM	13675	NA	CA	1	CA	1	406
+chrM_13138_13709_5:0:0_7:0:0_72/1_TT	chrM	13709	NA	TT	1	TT	1	407
+chrM_13242_13718_6:0:0_4:0:0_11d/1_AT	chrM	13718	NA	AT	1	AT	1	408
+chrM_13287_13740_4:0:0_5:1:0_1b8/1_GT	chrM	13740	NA	GT	1	GT	1	409
+chrM_13767_14345_8:0:0_5:0:0_f8/1_GC	chrM	13766	NA	GC	1	GC	1	410
+chrM_13776_14348_5:0:0_6:0:0_12f/1_GG	chrM	13775	NA	GG	1	GG	1	411
+chrM_13243_13775_6:0:0_5:1:0_1e/1_TG	chrM	13775	NA	TG	1	TG	1	412
+chrM_13792_14355_3:0:0_5:0:0_d/1_CA	chrM	13791	NA	CA	1	CA	1	413
+chrM_13799_14307_7:0:0_6:0:0_82/1_TT	chrM	13798	NA	TT	1	TT	1	414
+chrM_13306_13843_4:0:0_6:0:0_b/1_AT	chrM	13843	NA	AT	1	AT	1	415
+chrM_13398_13896_7:0:0_5:1:0_1e5/1_GC	chrM	13896	NA	GC	1	GC	1	416
+chrM_13409_13926_6:0:0_2:0:0_13c/1_AG	chrM	13926	NA	AG	1	AG	1	417
+chrM_13997_14575_4:0:0_2:0:0_97/1_AC	chrM	13996	NA	AC	1	AC	1	418
+chrM_13416_13997_2:0:0_2:0:0_d9/1_TA	chrM	13997	NA	TA	1	TA	1	419
+chrM_13540_14114_4:1:0_4:0:0_1b2/1_TC	chrM	14114	NA	TC	1	TC	1	420
+chrM_14120_14578_4:0:0_4:0:0_26/1_CG	chrM	14119	NA	CG	1	CG	1	421
+chrM_14134_14579_3:0:0_5:0:0_da/1_CA	chrM	14133	NA	CA	1	CA	1	422
+chrM_13711_14180_4:0:0_8:0:0_13e/1_GG	chrM	14180	NA	GG	1	GG	1	423
+chrM_14205_14774_5:0:0_5:0:0_105/1_CT	chrM	14204	NA	CT	1	CT	1	424
+chrM_13714_14222_2:0:0_1:0:0_182/1_GA	chrM	14222	NA	GA	1	GA	1	425
+chrM_13745_14261_7:0:0_4:0:0_b3/1_TA	chrM	14261	NA	TA	1	TA	1	426
+chrM_13794_14264_5:0:0_5:0:0_102/1_TA	chrM	14264	NA	TA	1	TA	1	427
+chrM_13867_14400_3:0:0_1:0:0_14f/1_AA	chrM	14400	NA	AA	1	AA	1	428
+chrM_13938_14449_2:0:0_6:0:0_1eb/1_GT	chrM	14449	NA	GT	1	GT	1	429
+chrM_13943_14452_3:0:0_4:0:0_11c/1_GT	chrM	14452	NA	GT	1	GT	1	430
+chrM_14006_14481_5:0:0_3:0:0_df/1_TA	chrM	14481	NA	TA	1	TA	1	431
+chrM_14135_14581_5:0:0_5:0:0_1de/1_AT	chrM	14581	NA	AT	1	AT	1	432
+chrM_14612_15169_2:0:0_5:0:0_e4/1_TT	chrM	14611	NA	TT	1	TT	1	433
+chrM_14668_15109_2:0:0_3:0:0_3d/1_TG	chrM	14667	NA	TG	1	TG	1	434
+chrM_14696_15126_2:0:0_2:0:0_a7/1_AA	chrM	14695	NA	AA	1	AA	1	435
+chrM_14727_15156_4:0:0_4:0:0_178/1_GA	chrM	14726	NA	GA	1	GA	1	436
+chrM_14245_14783_3:0:0_1:0:0_9d/1_GG	chrM	14783	NA	GG	1	GG	1	437
+chrM_14314_14802_5:0:0_3:0:0_191/1_GG	chrM	14802	NA	GG	1	GG	1	438
+chrM_14817_15261_5:0:0_4:0:0_65/1_AT	chrM	14816	NA	AT	1	AT	1	439
+chrM_14863_15320_2:0:0_4:0:0_d8/1_AA	chrM	14862	NA	AA	1	AA	1	440
+chrM_14869_15387_2:0:0_7:0:0_1f/1_AC	chrM	14868	NA	AC	1	AC	1	441
+chrM_14888_15340_3:0:0_3:0:0_112/1_GG	chrM	14887	NA	GG	1	GG	1	442
+chrM_14368_14894_6:0:0_5:0:0_40/1_TC	chrM	14894	NA	TC	1	TC	1	443
+chrM_14410_14941_6:0:0_3:0:0_e5/1_TA	chrM	14941	NA	TA	1	TA	1	444
+chrM_14962_15543_5:0:0_8:0:0_46/1_CA	chrM	14961	NA	CA	1	CA	1	445
+chrM_14456_14987_3:0:0_5:0:0_ab/1_GT	chrM	14987	NA	GT	1	GT	1	446
+chrM_15070_15569_5:0:0_5:0:0_cf/1_CA	chrM	15069	NA	CA	1	CA	1	447
+chrM_15140_15686_2:0:0_5:0:0_185/1_CC	chrM	15139	NA	CC	1	CC	1	448
+chrM_15142_15661_7:0:0_3:0:0_11e/1_CT	chrM	15141	NA	CT	1	CT	1	449
+chrM_15192_15694_5:0:0_2:0:0_f7/1_CA	chrM	15191	NA	CA	1	CA	1	450
+chrM_15211_15685_5:0:0_2:0:0_1d7/1_AC	chrM	15210	NA	AC	1	AC	1	451
+chrM_15225_15786_3:0:0_6:0:0_17e/1_TT	chrM	15224	NA	TT	1	TT	1	452
+chrM_15258_15810_4:0:0_6:0:0_5f/1_TT	chrM	15257	NA	TT	1	TT	1	453
+chrM_14817_15317_5:0:0_2:0:0_59/1_GC	chrM	15317	NA	GC	1	GC	1	454
+chrM_15324_15836_4:0:0_3:0:0_94/1_AC	chrM	15323	NA	AC	1	AC	1	455
+chrM_15365_15880_4:1:0_3:0:0_80/1_CA	chrM	15364	NA	CA	1	CA	1	456
+chrM_15408_15863_2:1:0_3:0:0_1e6/1_AG	chrM	15407	NA	AG	1	AG	1	457
+chrM_15439_15924_0:0:0_4:0:0_172/1_TG	chrM	15438	NA	TG	1	TG	1	458
+chrM_14931_15457_2:0:0_4:1:0_1a1/1_AA	chrM	15457	NA	AA	1	AA	1	459
+chrM_15547_16054_5:0:0_1:0:0_af/1_GA	chrM	15546	NA	GA	1	GA	1	460
+chrM_15134_15560_3:0:0_4:0:0_1c4/1_GG	chrM	15560	NA	GG	1	GG	1	461
+chrM_15575_16118_5:0:0_4:0:0_1aa/1_GC	chrM	15574	NA	GC	1	GC	1	462
+chrM_15052_15629_7:0:0_9:0:0_15f/1_GA	chrM	15629	NA	GA	1	GA	1	463
+chrM_15698_16224_5:0:0_6:0:0_138/1_AC	chrM	15697	NA	AC	1	AC	1	464
+chrM_15247_15721_2:1:0_6:0:0_17/1_TC	chrM	15721	NA	TC	1	TC	1	465
+chrM_15218_15763_2:0:0_2:0:0_171/1_AG	chrM	15763	NA	AG	1	AG	1	466
+chrM_15860_16419_5:0:0_8:0:0_53/1_TA	chrM	15859	NA	TA	1	TA	1	467
+chrM_15864_16329_3:0:0_3:0:0_18b/1_CG	chrM	15863	NA	CG	1	CG	1	468
+chrM_15507_15962_3:0:0_0:0:0_5b/1_GT	chrM	15962	NA	GT	1	GT	1	469
+chrM_15430_15985_5:0:0_3:0:0_2c/1_AT	chrM	15985	NA	AT	1	AT	1	470
+chrM_15706_16238_6:0:0_7:0:0_7b/1_AG	chrM	16238	NA	AG	1	AG	1	471
+chrM_16252_16701_2:1:0_5:0:0_147/1_TA	chrM	16251	NA	TA	1	TA	1	472
+chrM_15753_16280_5:0:0_6:0:0_180/1_TG	chrM	16280	NA	TG	1	TG	1	473
+chrM_15777_16347_2:0:0_6:0:0_16/1_AT	chrM	16347	NA	AT	1	AT	1	474
+chrM_16366_16911_6:1:0_6:1:1_168/1_CC	chrM	16365	NA	CC	1	CC	1	475
+chrM_16370_16833_6:1:0_6:0:1_1bb/1_AC	chrM	16369	NA	AC	1	AC	1	476
+chrM_16402_16876_2:0:0_1:0:1_98/1_CA	chrM	16401	NA	CA	1	CA	1	477
+chrM_16426_16953_3:0:0_2:2:0_60/1_AA	chrM	16425	NA	AA	1	AA	1	478
+chrM_15986_16442_3:0:0_7:0:0_15d/1_TG	chrM	16442	NA	TG	1	TG	1	479
+chrM_16030_16460_6:0:0_4:1:0_20/1_AT	chrM	16460	NA	AT	1	AT	1	480
+chrM_15909_16463_3:0:0_7:1:0_106/1_GT	chrM	16463	NA	GT	1	GT	1	481
+chrM_15984_16500_4:0:0_1:0:0_6b/1_GT	chrM	16500	NA	GT	1	GT	1	482
+chrM_16070_16513_3:0:0_7:1:0_1e7/1_TA	chrM	16513	NA	TA	1	TA	1	483
+chrM_16064_16572_4:0:0_6:1:0_f1/1_TG	chrM	16572	NA	TG	1	TG	1	484
+chrM_16245_16740_4:1:0_2:0:1_127/1_TA	chrM	16742	NA	TA	1	TA	1	485
+chrM_16315_16834_5:0:0_3:0:1_18/1_TT	chrM	16834	NA	TT	1	TT	1	486
+chrM_16229_16843_2:1:0_2:0:1_c4/1_GC	chrM	16843	NA	GC	1	GC	1	487
+chrM_16420_16905_5:0:0_2:0:1_159/1_GT	chrM	16905	NA	GT	2	GT	2	488
+chrM_16420_16905_5:0:0_2:0:1_159/1_GT	chrM	16905	NA	GT	2	GT	2	488
+chrM_16419_16923_3:0:0_3:0:1_183/1_CG	chrM	16923	NA	CG	1	CG	1	489
+chrM_16585_16993_5:0:1_5:1:0_1b9/1_GA	chrM	16993	NA	GA	1	GA	1	490
diff -r 000000000000 -r 8db56d2f8b72 test-data/group_out4.bam
Binary file test-data/group_out4.bam has changed
diff -r 000000000000 -r 8db56d2f8b72 test-data/group_out4.tab
diff -r 000000000000 -r 8db56d2f8b72 test-data/group_out5.bam
Binary file test-data/group_out5.bam has changed
diff -r 000000000000 -r 8db56d2f8b72 test-data/group_out6.bam
Binary file test-data/group_out6.bam has changed
diff -r 000000000000 -r 8db56d2f8b72 test-data/out_R1.fastq.gz
Binary file test-data/out_R1.fastq.gz has changed
diff -r 000000000000 -r 8db56d2f8b72 test-data/out_R2.fastq.gz
Binary file test-data/out_R2.fastq.gz has changed
diff -r 000000000000 -r 8db56d2f8b72 test-data/out_SE.fastq
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/out_SE.fastq	Thu Jun 21 15:20:14 2018 -0400
@@ -0,0 +1,288 @@
+@HISEQ:105:C2UE1ACXX:3:1101:11160:2245_TTA 1:N:0:CAGATC
+AAAAGTAGTTAATATATTAGATTTGTTTGATAGTGGTAGTATATATTTTTTATTTTAGTATTTAGGAGGTAGAGGTAGATGAATTTTTGAGTTTAAAG
++
+BBBFFFFBFFFFFIIIIIIBIIIIBIFFBFIIBBFFFFFFFFIIIIIIIIIIIIIIIBFIIIIIB7BBBFBBFFFF77<F7BFFFFFF7B7BBFFFF7
+@HISEQ:105:C2UE1ACXX:3:1101:19467:2281_TTT 1:N:0:CATATC
+TTGGTTAGGGTGAGATGTATAGTTTGGATTTTAGTGATTTTTGTAAAGGGGGAAAAGAATGGAGTTTTGGGTGTAGTGAGAGGTTATAGGAGTAGGGA
++
+<B<<FFFBBFFFFFFFFFIFIBFFI<<BFFFIIBBBFFIIIIBFFIIBBF7BBFFFBFFF77BBFBFF777BBBBBB<<<B<7<7BBF77<7<70000
+@HISEQ:105:C2UE1ACXX:3:1101:7009:2740_TAG 1:N:0:CAGATC
+AAGTTTTGTTTTTTATTTGGAGGTTATGGAATGTTAAGTAAGGTTTTTTTGGGTTTTGTTATTTATTTGATAATTGTGATTGTAATGTTAATAAGGGA
++
+BBBFFFFFFFFFFIIIIIB<FFFFFFIBBFIIFFFIIFIIIFFIFFIIII<0<BBFFBFFFFFFFFFF<BBFFFF<BBBBF7BFFF<BBFFFFF<00<
+@HISEQ:105:C2UE1ACXX:3:1101:19067:2707_TTT 1:N:0:CAGATC
+GTTTTTTTATTTGATATTTTAAAGGTTTTTTTTTTTTTTTTAGAAAATTTTTTTTAGTAAGATAGATTTTAAAGGGTTTGTTTTTTTTTTTTTTTTTT
++
+BBBFFFFFFFFFBBFFFFIIIFIFFIFFIIIIIIIFFFFFB7'0<B0<BBFF'7<0'0<<''0<'0'0<BBB<<B'7'0'0'0<BFFFFFFFFFFFFF
+@HISEQ:105:C2UE1ACXX:3:1101:4999:3182_AGG 1:N:0:CAGATC
+GTTTTATGAGGATTTTAGGGGAGTGATTGTTTAAAGTTTATAAGATTTATGATTTATATATAGTTAGAATAGTATGTGTTAAATAAATATAAAGGGAG
++
+<BBFFFFBFFFFFFIIFBBBFFFIIFFIBFFIFIIBFFIIIIIFFIIIIIBFFIIIIIIIIIBFFIBFIII<FFFBFBFFFFFFFFFFFFFFF<07<7
+@HISEQ:105:C2UE1ACXX:3:1101:2300:3263_GTT 1:N:0:TAGATC
+TTATTTTTAATAAAATTTTTATTATTTAATTTATTAGTTAATATTTAGGAGTTTTATGTTGTGGTAAAATTTTGTTAGAGAGATAGAGAAAGTATTTA
++
+BBBFFFFFFFFBFFIIIIIIBIBBFFI0<FFFBFF70B00<'0<FFFBBBBFF''0B0BB000'7BBFFFFII'<BF0<'<''07'70BBF'7BBBFB
+@HISEQ:105:C2UE1ACXX:3:1101:5605:3427_AGA 1:N:0:CAGATC
+AGATGAGAGGTATAGGATGTGGGGAGTTTTAGTAAGATTTATAGATAAGAAGTGGTTCGGTTATAGGATTTGTTTTAGATTTTTAGATTTTTTTGTGT
++
+BBBFBFFFFFFFFFFBFFFFIIIIIIIBFFFBFFIBFFIIIIIFFIIIFFIBF7BFBFBBFFIFF<<FFFFBBFFBF0<BFFFFF7<BFFFFFF0B7B
+@HISEQ:105:C2UE1ACXX:3:1101:8129:3589_GAT 1:N:0:CAGATC
+TTTTAGTTTTTAGTTAGGATTATACGTTTATTGTGATAAAAGAGTTTTTTGATTTATCGGGTTATGTTAGGGTTTATTGATATTAGGGAATTTGAAGA
++
+BBBFFBFFFFFFBFFFBBFIIFIIFBFFFFII<BBFFFIIIBFFIFIIIIBBFFIIII<7<FBFF<FBF<7<BBFFFF7<BFFFF700<BBFF0<B'<
+@HISEQ:105:C2UE1ACXX:3:1101:14304:3866_TAA 1:N:0:CAGATC
+GTGTTTATATAGGGGATTTTTGAGTTTGATAGGTTGTTTTTGTAGAGGGTAGAATTTTGTGGAAATGTTGGTATTGGTTAAGGGGTTTTAGTGAAGAA
++
+<BBFFFFFFFFFFFFFFFFII<BBFFFBFFIFBFFBFFFII7FFFFFFFIF<BFIIII<F<BBFIFBFB7<BFFFBBBBBF777<B7BBF7B<BB7BB
+@HISEQ:105:C2UE1ACXX:3:1101:12720:4398_AGT 1:N:0:CAGATC
+GTATGTGTGTGTGTGTGTGTATTTAATTGAAGTTGGGTTTGGTGATATATATGTTTAATTTTAGTATTTTAGTGGTAGAGGTAGGTTAATTTTTGTTG
++
+<BBFBFFFFFFFFIFIFIFFFFFIIFII0BFBFFB7BFFF<BFFFFIIIIIIBFIIIIFIIII<FIFIIIFBFBBFB7B<<BB7<B<BFFFFFF0<B0
+@HISEQ:105:C2UE1ACXX:3:1101:14945:4439_ATT 1:N:0:CAGATC
+AGTGTTGAGTGGAGTATTAGAGAAGAGAAATAAGATAATAAAGTAATAGTTGTGATTAGGAGGTTTTTATAAGTTGATGGTTTATGTTAAGTAAGTTT
++
+BBBBFFBFFFFFFFFFFIIBIFFIFFBFFIIIIBFFIIIIIIBFFIIIBFFBFFFIIIFBFFBFBFFIIIIIFFFBBF77BBFFF7BBFF<BBF<<BF
+@HISEQ:105:C2UE1ACXX:3:1101:8616:4508_AGG 1:N:0:CAGATC
+AGAAATTTTGGGGGTGTAGGAGTGGTAGGATAGGAGTGTTGTTTTGTAATAGTTTTTTTTGAGGTTTAATAGGTAGGGTAGTTATTTTTAGTATTGTA
++
+BBBFFFFFFBBBFFFIIFFFIFFFIIFFIIFIFBFFFIIF<FBFI<FFIIIBFFFFFFFF077<B<BBBFF<<BBBBBB<7B<BFFFFFF0BBFF0<B
+@HISEQ:105:C2UE1ACXX:3:1101:18975:4834_GAG 1:N:0:CAGATC
+TATAAATGGTAATTTTGTAATTTAAAGATTTAAAAGTAATTATTGGTAATAGTTATTTGTGGGAGGTTGAGGTAGGGGGATTTTTGTAGAGATCGGAA
++
+BBBFFFFBBFFFFIIIBFIIIIIFIIFFFFIFIIIBFIIIIIIIB<FFIFIBFFFIIIBFFBFFFII<<BFBFFFFIFF<BBBFF0BB7<<<BF707B
+@HISEQ:105:C2UE1ACXX:3:1101:4984:5374_TTG 1:N:0:CAGATC
+TGTATCGAGGTTTGAATGAGAGTGGTATTTTTGTTATTTGTTAGTTAATGGTTTTGAGTATTAGTTTGGAAAATGATAATAAGTATTAGTTGAGGTGT
++
+B<BFFFBFFFFBF<FFFBFFFFFFFIFFFIII<BFFIIIBFFFFFFIIIBBFFFIBBBFFFIIBFFF<<BFFFFBBFFFFFF<BBFFF<BB7<7<BBB
+@HISEQ:105:C2UE1ACXX:3:1101:12336:6058_TTT 1:N:0:CAGATC
+ATTTAGATGATGGTTTTTTTATTTGATATTTTAAAGGTTTTTTTTTTTTTTTTTTAAAAAATTTTTTTTATAAAAATAAATTTTAAAGGGTTTTTTTT
++
+BBBFFBFFBFFBBFFFIIIIIIIIBFFIIIIIIIIBFFFFIIIIIFFFFFFFFF700<BF0BBFFF0<70''00'0'000'<<'<B<00'0'00007<
+@HISEQ:105:C2UE1ACXX:3:1101:5999:6265_ATG 1:N:0:CAGATC
+TATATTGTTATATATTTGTGTTTTTTTTGAATTTATTTTTTGTTTATTAGTTTTTGTGGTTGATAGGGTTTTTGGATATTGGGTTGTTTTTATATATA
++
+BBBFFFBFFFFFFIIIIBIFIFIIIIII<BFFIIFIIIIII7BFFFIIFBFFIII<B<BFB<BBF<BBBBBFF00<BFFF700B<7<BFFFFFFFFFF
+@HISEQ:105:C2UE1ACXX:3:1101:5836:6568_TTT 1:N:0:CAGATC
+ATTTGGATGTTAAGGATTGGTTTTTTTTTTGATTTAGGGTATTGTTAGATAGTATAGATTTTACGGAGTTTTGTATTTGAAAGGTTGTTGGTATGTTT
++
+BBBFBBFFFFFFFFFFFFBFIFIIIIIIII'0<FFB<BBFFBF7BFF7BFF<BBFF<BFFFFFF<<BBFBBF7BBBFF'<BB0'<B0<B0'7<B<BFF
+@HISEQ:105:C2UE1ACXX:3:1101:12432:6996_GAT 1:N:0:CAGATC
+AAGTTATTTATGAGATTAGTTTATAGTAAATTAAAAAGGGTCTTAGTATTTTGATTATGAAATTAATTATTTTAGTAATATTTGAAGTTGTAATTTTA
++
+BBBFFFFFFFFBFBFFIIBIIIIIIBFIIIIIIIIIIFBFFFFFIFFIIIIIBFFIIIBFIIIIIIIIIIIIIIBFFIIIIII7BF<BF<BFFFFFFF
+@HISEQ:105:C2UE1ACXX:3:1101:2440:7931_TGA 1:N:0:CAGATC
+ATTTGAAAAGTGTTATAGATATTAGAAAGGTATGGAGATGAGAGGTATAGGATGTGGGGAGTTTTAGTAAGATTTATAAGATCGGAAGAGCACACGTC
++
+BBBFBFFFFFFFFFIIIBFFIIIIBFFIBBFFIBBFFIFFFFFFFIFFIBBFFFFFFFIFIIBFFIBFFFBFFFFFFFF7BBF70<B0<7<BBBF0<B
+@HISEQ:105:C2UE1ACXX:3:1101:6407:7896_ATC 1:N:0:CAGATC
+TTTATAGGTTTGGGTTGAGGATATGTATTGGGAGTTATTAGAGGGTTATAGTTAGGAGAGATCGGAAGAGCACACGTCTGAACTCCAGTCACCAGATC
++
+BBBFFFBBFFF<BBFFBFFFFFIIBFFIIBBBFFFFFIFFBFFFFIBFFIBFFIBBFBFFFFI<BBF<F<BFFFFBFBF<BBFFFFB<BBFFFB0<BF
+@HISEQ:105:C2UE1ACXX:3:1101:19497:7952_ACC 1:N:0:CAGATC
+ATACGTAGATGTTTAAAAGTTTAAATAAATGTATTTAGAGGTTTATGAGGTTTATGGTTAAGTGGAAGATCGGAAGAGCACACGTCTGAACTCCAGTC
++
+BBBFBFFBFFBFFFIIIIBIIIIIIIIIII<BFFIIFBFBFFFFFIBFBBFFFIIB7FFFIBFBBBFFFFFBBBFB<0<BFFF7<BB7BBBFFFF<BB
+@HISEQ:105:C2UE1ACXX:3:1101:3853:8232_TCC 1:N:0:CAGATC
+GGTTAGGTTGTTGTTGTATTTAGAGGTTTTTAGGAGTTGTTTTTGAGTTGTTGTTTATTTAGTTTGTCGGTAGAGATCGGAAGAGCACACGTCTGAAC
++
+<<BBFBFFFBFFBFFBFFFIIF<FBFIFFIIFBBFFIFBFFFIIBFBFFBFFFFFIFIIII<FFIBFI<<BF<BB<BF70<B0<7BBFFF0BBB7BBF
+@HISEQ:105:C2UE1ACXX:3:1101:7150:8384_TTA 1:N:0:CAGATC
+GAGTAGTAGTTTTTGTGTAGGTTTTGGTTTGTGTGGTATTAGTAGGTAGTAGTGTGTTAGTTGGAGCGATAGTAGTAAGTTATGGTTATTGTTTATTA
++
+BBBFFFFFFFFFFIBFBFFFFFFFFB<FFF<BBFFFFFFIFBFIFFFIIIIFFFIFIFF<FF7<BFFFFFFBBFBBBF<BBFF77<BBFF7BBFFFFF
+@HISEQ:105:C2UE1ACXX:3:1101:11512:8610_TGT 1:N:0:CAGATC
+TGTGTTTTGAAGTTGGCGGAGTTCGCGTTTTTAGGAATTTTGTTTTGGAACGGTTTGGTCGGGGTTTTCGTTTTTTTTTGTAGAAGTGTAGGAGATGT
++
+B<BFFFFF<FFBFFBBFFFFBFFFBFFFFFIII<7BFFIII7BFFI00<BFBBBBB77<B0<<<B7BBB7BFFFFFFFF'7<000'<'0B'0<<BB0<
+@HISEQ:105:C2UE1ACXX:3:1101:18629:8512_TAT 1:N:0:CAGATC
+TGAATTAATGAATTTTAAAAAAAAAGAAAGTAAGTTGTTTTTAGGATTGATATTTAGAGTTAATTTTTTGAGTTTTTTTGTTTGTTTAGGTTTTGGTT
++
+B<BFFFFFFBFFFIIIIIIIIIIII<FFIBFFFBFF7FFFIIF<<BBF7BFFIIIF7B<BBFFFFFFFF0<7BBBFFFF'0BB'0<B<'0<<B'''7B
+@HISEQ:105:C2UE1ACXX:3:1101:5146:8981_AGT 1:N:0:CAGATC
+TTTAGGTTTTAGTTGTTGTTGTTTGTTTTGTATTAGTGTAGTTATAATTTTTTTGTTGATTTTGTTGTTTTTAGAAGGTTTGGGGTGAGTTTAGTATG
++
+BBBFBBFFFFFBFF<FF<BFBFFI0BFFI0BFFFF<BBFFFFFFIIIIIIIIII7BF7BFIII<BF7BFFFFF0<<7'<<B00'0<<77BBBF'<BB0
+@HISEQ:105:C2UE1ACXX:3:1101:3344:9104_ATT 1:N:0:CAGATC
+TAGATGTTGAGTGTTTGTTTTGTGTTAGGTATTAGGTGGGATTAGGTGGTTATTATCGAGTTTTTAGGAGAGAGTATAGTTGTAAGCGGACGATAATA
++
+BB<FFFFFBFBFFFFFBFFIIBFBFFFBBFFFFFBBFFFIIFFFFBFFFIFFIIIII<FBFBFIIF<<BBFFFFFBBF<BB7<BF0<007B7<BFFFF
+@HISEQ:105:C2UE1ACXX:3:1101:2097:9536_GTT 1:N:0:CAGATC
+TTGGATTTTTTGGTTTGATAAGGAGTTTTGTAGGTTAAAGAATGTTTTTTAAGGGATTTTTGTTATGTGATTAGTTAATGGGATTTTATTTAAGTTTG
++
+BB<BFFFFFFFBBFFFBFFIIFBFFIFFIBFIFFFFFIIBFFIFFFIIIIII<<BFFFIFF<FFFFBFBFFFFBFBFFF700<BFFFFFFFFF<BBF<
+@HISEQ:105:C2UE1ACXX:3:1101:16351:9944_TTG 1:N:0:CAGATC
+TTGGACGGGATGGTTGTGGTAAAGTTTTAATAGTTTTATTGGGGGATGGTATAGAAGTAGTTTAGGTTGTATTGTGGGATTTATTTTTATTGTTTGTT
++
+<B<<FFFFFFFFFIFBFFFFFIIBFFIIIIIIBFFFIFFI70BFFFFFFFFFIBFFBFFBFFFFBBBB<BFFF<B<BBBBBBFFFFFFFFF0<BF0BB
+@HISEQ:105:C2UE1ACXX:3:1101:17628:10309_GTC 1:N:0:CAGATC
+TGTATGTTTAGATTTGTTTTGAATTTGCGTTTTTGGTTGTTGATTATTTTTTATTATTTTTTGTTTTTTCGTGTGTTCGGGAGATCGGAAGAGCACAC
++
+B<BFFBFFFFBFFIIBFFFI<BFFFI<F<FFFII<0BF<FF0BFFFIIIIIIIIIIIIIIIF7BFFFFFF7B7B<BBB7''707BF007B0<07<BBF
+@HISEQ:105:C2UE1ACXX:3:1101:1440:10515_TGT 1:N:0:CAGATC
+AGAGTGTTTTTAGTGTGAGGAGTTGGATGTTTTAGATATTTATTTTTATATTGTTTATTTAGGTTATGATTTATGTTTTATTTTAGTTTAATTTTTTG
++
+BBBFFFFFFFFFBFBFFFFIIIIFBBFFFFFFIF<BFFIIIFIIIIIFFFFIBFFIFIIIFBBFFFF<BFFIIIBFFFIIIIFFF7BFFFFFFFFFF7
+@HISEQ:105:C2UE1ACXX:3:1101:11787:10735_ATT 1:N:0:CAGATC
+AGAATAGGGAAGTGTATAGAAGTGATATATAGTTTAGATTTGAGTTTTTATTTTGTTTTTTATATTTTTAGATATAAGTAGTTATTAGATTTTTTTGA
++
+B<BFFFBBBFFFFFIFFIBFIBFFIFIIIIIBFFIIBFFIIBFFFFFIIIIIIIBFFIIIIIIIIIIIII<FFIIIF<FF<BFFFFF0BFFFFFFF0<
+@HISEQ:105:C2UE1ACXX:3:1101:10231:11124_TGT 1:N:0:CAGATC
+TTGTTTTAGTTATTTTTTGGTTTTTTAGATTTTATGTTTTTAGTTTTTATAATTTTTATATTGTATTTGTTTATTAAGTGTGAAATGTTTTTGTAGGA
++
+BB<FFFFFBFFFFIIIIIBBFFFFIIF<FFFIIFF<FFIIIFBFFFIIIIFFIIIIIIIIII<FFFFF<FFFFFFFF<B<B<BFFF<BBFFF0<B70<
+@HISEQ:105:C2UE1ACXX:3:1101:9833:11396_CAC 1:N:0:CAGATC
+GTTTTTATTTTTGGGATTAAGGTAGTTGTTTTTTGATTTTTGTGTGTTATAGTAAGAATGATATAGGAGATCGGAAGAGCACACGTCTGAACTCCAGT
++
+<BBFFFFFFFFFBBBFFFIIFFFFFFIBFFIIII<BFFIII7FBFBFFIII<FFFBFIIBFFIIF<7BBBFF<7B<0<7<BFFF7BBF7BBFFFFF<B
+@HISEQ:105:C2UE1ACXX:3:1101:13437:11566_TTT 1:N:0:CAGATC
+TTATTATTGTGGATTTTTTTAATAGTTTGAGAATGAGTTGATTTAGGGTTTTTATTTTATTTTTAAAATTAGGAGTATAATGGGTTTAAGATATAGTT
++
+BBBFFFFFBFFFFFFIIIIIIIIIBFFF<BBFFF<FBFFBFFFIFB7BFBFFIIIIIIIIIIIIIFIFFFF<7BBBBBFFF700<<BFF<BBFFF<<B
+@HISEQ:105:C2UE1ACXX:3:1101:10809:14594_AGT 1:N:0:CAGATC
+GTATTAGAGAAGAGAAATAAGATAATAAAGTAATAGTTGTGATTAGGAGGTTTTTTATAAGTTGATGGTTTATGTTAAGTAAGTTTATTAAGAAGTAT
++
+<BBFFFBFBFFFFFFFIIIIBFFIIIIIIBFFFIIBFF0BBFFFIBBFFFFFFFIIIIIIBFB7BFBBFFFII<BBFF<BBF<BBFFFFFF7<B<BBF
+@HISEQ:105:C2UE1ACXX:3:1101:7778:14963_TAT 1:N:0:CAGATC
+AGTGGATGATAATAATTTAGGTGATTTATAGTGAGATAAGAGGTATATGAATTTTAGTATTTATTTGTTTTTTTATTTTGGGTTATTTGAGGGTGTTT
++
+BBBFBFFBFFFFFIIIIIIBBBFFFIFFIIBFBFBFFFIBFFFFFFIIBFIIIIIIBFIIIIIIIIBFIIIIIIFFFFF707<<BFFF7<''077<BB
+@HISEQ:105:C2UE1ACXX:3:1101:2575:15554_AAA 1:N:0:CAGATC
+TTTGGGTTGGTTTTTTTTTTTTTTAAAAAGGTTTTAGGGTTTTGGTTTTTTTTATAATTTTATTAAAATATTAAATATTTATAAAATTTTTATTTTAA
++
+BBBBBBFFBBFFFIIIIIIIIIIB7'0'00'7<'00<B0<<BB7'7BBFFFFB'0<'<BFB'<<BB'00'0<'0'00<'000'0B0<BFF<'<BF<BF
+@HISEQ:105:C2UE1ACXX:3:1101:20234:16099_GGT 1:N:0:CATATC
+TAAGAGGAAAGAATGGAGAAGAAGATTGGTTTTAGGTATATGATGGAATAGGGTAAAAATGATAGTTGAGGTTAATGGTTTAATTTTTGGGAATTATA
++
+BBBBFFFFFFFFFIBBFFFFFFIBFFFB<BBFFFBBFFFFIBFFBBFFFFBBBFFFIIII<BFIBFF<BBFFFFFB77BBFFFFFFFF000<BBFFFF
+@HISEQ:105:C2UE1ACXX:3:1101:20842:16102_TTA 1:N:0:CAGATC
+TTGGGATTGTTTTTGTTTGAATTATTTTTTTGTATTATATTTTAATGTGTTGTTTATTTTTAGAATATGGAATTTGTAGGAAATTTTTAAAATTTATT
++
+<B<BBFFFFFFFFIBFFIBFFIIIIIIIIII7BFFIIIIIIIIIIIFFFFFBFFIIIIIIII<BFFFF<7BBFFF<BB00<BBBFFFFFFFFFFFFFF
+@HISEQ:105:C2UE1ACXX:3:1101:21194:16434_TTT 1:N:0:CAAATC
+TATAGGTTTTTATTTATGTAGTTTTTTGTATTTGTTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
++
+BBBF<<BBFFFFFIIFI<BFBFFFIII7BFFBF0BFFFI7BFFFIIFIFFFFFBFBBFFFBBBFFFBFFFFFFFFFFFFFFBFFB<<7BBFFFFFFFF
+@HISEQ:105:C2UE1ACXX:3:1101:7164:16848_ATA 1:N:0:CAGATC
+TTTTTGAGTTTGATAGGTTGTTTTTGTAGAGGGTAGAATTTTGTGGAAACGTTGGTATTGGTTAAGGGGTTTTAGTGAAGAATAAATTTTTATGTTGT
++
+BBBFFBBBFFFBFFIBBFIBFFFII<BFBFFFIIFBFFFFIIBFB0BFFIBFF<<FFFI77BFFI<<<FF<BBF<B<<B7BBFFFFFFFFFFF'<B7B
+@HISEQ:105:C2UE1ACXX:3:1101:12454:17532_TTT 1:N:0:CAGATC
+TTGGTGTAGAGGTTTGTTAAGTGTGGTATGGTTGAGAATATTCGTGTTTTATTGGTTAAATGTGATTTTTGTATTAAGTTGAGAGTTAGGGGTTTTGT
++
+<B<<BFFFBFFFFFF<FFFFBFFIFFIFFBBFF<BBFFFFIIIFFFFFFIFIIB7FFFFII<FBFFIIII<FFFFFF<BB7B7B<B<B7''7<<BF<B
+@HISEQ:105:C2UE1ACXX:3:1101:2584:17964_TTT 1:N:0:CAGATC
+TAGAGGGTTTTGTAGAGTATTTGAGTATTTGTTATTATTGTTGTATTTATAGTATTAATTTTTTTAGGAGTAAAGTAATTTTATTAAGTTTTAATAGA
++
+<B<FFFFFFFFBFFBFFFFFFIBFBFFFIIBFFFFIIIIBFFBFIIIIIIIBFIIIIIIIIIIIII<7BBFFFFFFBFFFFFFFFFF<BBFFFFFF7<
+@HISEQ:105:C2UE1ACXX:3:1101:9624:17911_AAT 1:N:0:CAGATC
+ATTTTGATGTTATTATTTATTTATAAAGTAAGAATAAGGTTATTGGTTTTGTTGTTTTTTAGAGTTGTAAGGAGGATTTTATATAGTAAAAGATGTAG
++
+BBBFFBFFBFFFFIIIIIIIIIIIIIIFFFFFFIIII<BFFFFIBBFFFIBFIBFFIIIIFBFBFB<FFIBBB<<BBFFFFFFFF7<BFFF<BB7BB7
+@HISEQ:105:C2UE1ACXX:3:1101:19795:18124_GGA 1:N:0:CAGATC
+TTTATATTAATTTTTGGGTATTATTTTAGTGTGTTTAAGATGATATTTTAAGAGAAATTTGAATTGAAGAGATTAGTTTTTTATAAATGGCGTATGAA
++
+BBBFFFFFFFFFFII<<<FFFFIIIIII<FBFFFFFIIBFFBBFIIIIIIIBFBFFIIIIBFFFI<BFBFBFFFIFFIIIFFFFFFFF7'70<BB7<B
+@HISEQ:105:C2UE1ACXX:3:1101:2293:18893_TGA 1:N:0:CAGATC
+TGGATGCATGAAAAGTGTATTTAATTGGTGAGTTATATTTTTTGTCTTTTGGTTTTCGTTTTTAGATATTTATTTATTAGTTTTTATTGTTTTTAGTT
++
+<<<BFBFFFBFFFIBFBFFFIIFIIIB<BBFBFFFFFIIIIIIBFFIIII70BFFII7BFIIII7BFFFFFFFFFFFFF7BBFFFFFF<BBFFFF7BB
+@HISEQ:105:C2UE1ACXX:3:1101:12741:20220_TGT 1:N:0:CAGATC
+ATTTTTTTGGAAGAGAAGGAATTTATTTAGGGGAAATATATGTGTTTATATAGGGGATTTTTGAGTTTGATAGGTTGTTTTTGTAGAGGGTAGAATTT
++
+BBBFFFFFB<FFBFFFFFFFFIIIIIIIIBBFFFFFIIIIIBFFFFIIIIII<77BBBFFFF7BBFBF<BBF<<B<<BBFFF7BF7B<'0<<0<BFFF
+@HISEQ:105:C2UE1ACXX:3:1101:18680:20134_TTT 1:N:0:CAGATC
+TGTTTGGAAGTATGGTGTTTTTTAAGAGGTTTTTGGTTATTTAGTTTGAAATGATTTAGATTATTTTGTTTTTTTGGTTGGGGTAGGTTTTGGAAATT
++
+B<BFFBBFFFFFFFFFFIFFIIIIIBFFFIBFFIB7BFFIIIIFFFI<BFIIBFFIIIBFFIIIIIIBFFFFFFF<7BB70077777BBBF7'<BBFF
+@HISEQ:105:C2UE1ACXX:3:1101:19451:20037_TAT 1:N:0:CATATC
+GTTGGTATATTGAGTTTACGTTGCGTTTGTATTATGGAATTTTTTTTGGTGTAGTTTTTGAAGGTGTATTGAGGTTTGAATGAGAGAGGTATTTTTGT
++
+0BB<BBFFBFF0BBFFIIIBFF<B0BFF0BFFFIIB<BFFFIIIIII<7B<BBBFFFFF7<B<BBBBBBF0<70<7<'<BB'<7<'707<<BBFFB07
+@HISEQ:105:C2UE1ACXX:3:1101:14848:20360_GAT 1:N:0:CAGATC
+TCTTTATTAATATATAAAAAAAGATATTAGGGAGGATCGAGGGTGTTTTTGTTATGTTTGTTTTATAGAGGAGTATATAGATTGAGGTATAGATACAG
++
+BBBFFFFFFFFFFIIIIIIIIIBFFIIIIBBBFFFFFFBFFFFIIIFFII<BFFFBFFFBFFFFFFF<B<<BBBBBFFF7<BF7<00<<BF0<BFFF0
+@HISEQ:105:C2UE1ACXX:3:1101:12295:20565_TTT 1:N:0:CAGATC
+ATAAGATAATAAAGTAATAGTTGTGATTAGGAGGTTTTTTATAAGTTGATGGTTTATGTTAAGTAAGTTTATTAAGAAGTATAGTATTATATATAGTA
++
+BBBFFFFFFFFFFFFIIIIFII<FBFFIFBBFFFIFFFIIFIIIFFF7BFBBFFFIIBFFIIFFFIFIFFIIIFI<<B7<BFF07<BFFFFFFFF77<
+@HISEQ:105:C2UE1ACXX:3:1101:11915:21129_GTA 1:N:0:CAGATC
+TTTGTTAGTTTTATATTTTTAAGTTTTTTTTTAGGTTCGTTTTAGAAATAGTATGTGTTAAATAGTGAAGTAATTTTTGGTTTTATAATGAGGAGTGG
++
+BBBBFFFFFFFFFIIIIIIIIIFIIIIIIIIIIB7FFF<FFFII<FFIIIBFIFBFFFFFFFFF<BBBFBBFFFFFFF00<BBFFFFFF7<00<0<<<
+@HISEQ:105:C2UE1ACXX:3:1101:12442:21376_GTT 1:N:0:CAGATC
+GTGTATATATTAATTATATTTTGATATGTTTGTATAGGACGGTTATTGGAATAAAATATAAAAAAGTAAGTAAGTAAATAAAAAAATATAAGGTGAAA
++
+BBBFFFFFFFFFFIIIIIIIIIBFIII<FFI<FFII<BFFBBFFFII77FFFFIIIIIIIIIIIIBFFFBFFFBFBBFFFFFFFFFFFFFF7077<BB
+@HISEQ:105:C2UE1ACXX:3:1101:10225:21919_GTG 1:N:0:CAGATC
+AGTGAAGAGGGAATGAAAAGTTTTTGATTTAATTTATATAATTAAAAAAGTTGGTAGTTATAGTAGTTTAATTTTTTATTATTAAGTTTGTGTGTGGT
++
+BBBFFFFFFFFFFFBFFIIFIFFII<BFFFIFFIIFIIIIIIIIIIIIIFFB77BFBFFFII<FFBFFFIFIFFFFFFFFFFFFF7<BF7B<B<B<7<
+@HISEQ:105:C2UE1ACXX:3:1101:12240:21986_ATC 1:N:0:CAGATC
+ATTGTTATTAATATAGGGGGTAGTTTTGGTTTGGGATTGAGGGAGGAATTATAGGAGAATTATTTTTTGTGTAGGAGGGAGAGTTTGAAATTAGGAAG
++
+BBBBFFFFFFFFFIIFBFFIIFFIFIIBBFFF77BFFF7B<BFFBFFFFIIFF<<B<BFFFFFFFFFF7BBBFB<<<<<<<BBBBB0BBFFFF00<B7
+@HISEQ:105:C2UE1ACXX:3:1101:2199:22213_GTT 1:N:0:CAGATC
+TTAAAGTTATTATTGGAATTTTAAGTTAGGTTATATGTAGGTTATGTATAGGTTTTTATTGTGGGATGAATGGTATTTGGAGCTTGTTTAAAAGTTAG
++
+BBBFFFFFFFFFFIBBFFIIIIFIBFFIBBFFFIFIFIIFFIFFIBFIIIFBFFFIIIIIBFBBFFFBFFF<<FFFFI70<7BFF<BFFFFFFBBBF7
+@HISEQ:105:C2UE1ACXX:3:1101:13060:22287_TGT 1:N:0:CAGATC
+TAGTGAAGAATAAATTTTTATGTTGTATATTATTTTTTTTTAGTTCGTATATATCGGTATACGTGTTAGGATTTATAAAGATAGTTATTATTTTTTGT
++
+BBBFFFFFFFFFFIIIIIIIIBFIFFIIIIIIIIIIIIIIII<FFIBFFIIIIIIB<BFFFFBBBBBF<<BBFFFBFFF<BBF7<BFFFFFFFFFF7B
+@HISEQ:105:C2UE1ACXX:3:1101:7272:22581_TTA 1:N:0:CAGATC
+TTAATGATATTAAGAATTTTTTAAAGAATTTTATTTTTTTTAGGAATAGAAGGAGGAGGAGTATTTTGATCGATTTTTTAGGTTTTTTATAGGTGGAG
++
+BBBFFBFFFFFFF<BFIIIIIIFIIBFFFFIIFIIIIIIIII<<FFFIBFIBBFFBFFFFFFBBFFF<BBF<BBFFFFFF00<BBFFFFFF000<777
+@HISEQ:105:C2UE1ACXX:3:1101:10060:23020_TTT 1:N:0:CAGATC
+TTTTAGATTATTTAAGAAGGTATTAGGTTTTTAAGAGGAAAGGGTAGTCTTATAGTTTTGAGTATTTTTTTTAAAAGGAAGTAAGGATGGTGTTTTTA
++
+BBBFFBFFFFFFFIIBFIFFFFFIBBBFFFFIIIBFFFIFIBFFIFFFFIIFFFBFFII7B<FFFIIIIIFFFFBB77<B<BBF<7BB<<BBBBBFFF
+@HISEQ:105:C2UE1ACXX:3:1101:14440:23104_TTT 1:N:0:CAGATC
+TTTAAATTTAAGTTAAGGTTTGGGGAGTTGATTTTTGTTTTGTGGGTTGTTTTTTTTGTAGGAGTTGGTTTTTAGAGGTTTTTAGGAATTTTTGGTGT
++
+BBBFFFFFFFFFFFIIBBIFIBBBFFFFFBFFIIIIBFFIIBFBFFFFFFIIIIFFF7BB<<BBFB<BBBBFFB7<00B<BBFF00<BBFFFF''77B
+@HISEQ:105:C2UE1ACXX:3:1101:6941:23338_GTT 1:N:0:CAGATC
+AGAAAGGTTTTAAGTTGGTTGGGAATATAGGGGTTTTTTAGAGTTTTTATTAGGAGTTATAGTGTGTTGAATTTGGTTTTGGGTGTTGATTATAGGTT
++
+BBBFFFFFFFFFFBFFBBFFBBBFFFFIIBFFFIFFIIIIBFFFFFIIIIIIB<FFFFFFFBFBFFFF<BBFFF<<BBBB700<BBB0BBFFFF00<B
+@HISEQ:105:C2UE1ACXX:3:1101:10069:23622_TTT 1:N:0:CAGATC
+TTTTGTTTTAGGGTTTTATTTTTGTGTTTTATTTTTATTTTCGTATTATTAGTTTTTTTTATACGTTATTTGTAGAAGGTTAGTTTTTTTAATTTAGG
++
+BBBFBFFFFFBBBFFFIFIIIIIBFBFFIIBFIIIIIIIIIIBFFFIIIIIFFIIIIIIFFFFF<BFFFFF<BF<<B77BBB7BBFFFFFFFFFFF00
+@HISEQ:105:C2UE1ACXX:3:1101:14079:24078_AGT 1:N:0:CAGATC
+TTTAAAGTTTTTAGTTTTGAGTGGAATTTTAAGAATATTAGTGCGTTTTAAGCTTAGGTAGTTTTGGTAGTTTGAAAGTAATAGGGTGTATTTTGTAA
++
+BBBFFFFFFFFFFBFFFI<BBFFFFFFIIIIIBFFFIIIIBFFFFFFIIIIBFFIIBBFFFFFFI<7BFBFFF<BBF<BBFFF<07BBBBBFFF<BFF
+@HISEQ:105:C2UE1ACXX:3:1101:12064:24631_TTT 1:N:0:CCGATC
+TTATAGTGTATTTATATATATGAAATGAATTAATGAATTTTAAAAAAAAAGAAAGTAAGTTGTTTTTAGGATTGATATTTAGAGTTAATTTTTTGAGT
++
+BBBFFBFFFFFFFIIIIIIIIBFIFF0BFIIIIIBFFIIIIIIIIIIIIIBFIIFFFIBFFBFFFFFFB<BFF7BBFFFFF<B<BBBFFFFFFF'70<
+@HISEQ:105:C2UE1ACXX:3:1101:11630:24964_GAT 1:N:0:TAGATC
+TTAGTTTTTTTAGTGTTTTTTATTTATTTCGTTTTATTATTGGAGTTTGTTAAGAAAATTAGGGTTTGATTTGGATGTTAAGGATTGGTTTTTTTTTT
++
+BBBBFFFFFFFFBFFFFIIIIIIIIIIIIIBFFFIFIIIIIB7BFFFFBFFIIBFIIIIIFB<BFBFBFFFF<7BB<BBFF<7<BB77BBFFFFFFFF
+@HISEQ:105:C2UE1ACXX:3:1101:12594:24878_AAT 1:N:0:CCGATC
+TTTAATAGGATATGATATTATTTAATTTATAGATTATGGAAATTTTTTATATTTAATGAAGAAAGTTGGAATGTTTTGGGAGGTGTTTAGAATAAATA
++
+BBBFFFFB0BFFF<FFIIIFIIFIIIFIFIF<BFFFF<<BFFFIIIIIIIIIIIIIIBFFBFFIBFB7'<FF<<BBF0''77<BFB<BB0<BBBBBFF
+@HISEQ:105:C2UE1ACXX:3:1101:4483:25030_ATT 1:N:0:CAGATC
+AGGATGGTGTTTTTATTTTTAGATTTATATTATTTTGTTATATTTGTATTTGAGTAAGTTTATGGGTTTTTTAAAGAGGTAGGAGGAAGTTTTTTGTT
++
+B<BFFFFFFFFFFIIIIIIIIBBFIIFIIIIFIIII<BFFIFFIIBFIIII<BBFFIFIFIIIB7<FFFIIIFBF<<77BB00<70<B7BBBFFF0BB
+@HISEQ:105:C2UE1ACXX:3:1101:12198:25235_TTA 1:N:0:CAGATC
+ATATATGTAGTTTGTATTATTTTTGTTATAGTATATAAAGGTTAAAGAGTAGTTGTTTTAATTTTAGAGGTGGAGATTGGGTTGTATAGTTTTGGTTT
++
+BBBFFFBFFFFFFBFFIIFIIIII0BF<FF0BFFFIFFIBBFBFII<FBFBBFF7FFFIIIIIIII<F7<B'<BB7<B''0<<0<BBB77<BB'0<<B
+@HISEQ:105:C2UE1ACXX:3:1101:20477:25084_TGT 1:N:0:CATATC
+AGAGTTTATTGAGAAGTAAAGTATTAATTTTATGGGAGAAATGGGATAGAGGTAGTAGAAGTTGTTATGGAATGGGATTAATTAGGAAGTTAATTAAG
++
+BBBFFFFFFF0BBFFBFFIIFFIIIIIIIIIFIBB7FFFFIIFFBFFIFIBFFFFIIFIIFFFBFFFF77BFF<<B<FFFFFFF70<B7BBFFFFFF7
+@HISEQ:105:C2UE1ACXX:3:1101:5725:25359_TAG 1:N:0:CAGATC
+GAGAAATAAGATAATAAAGTAATAGTTGTGATTAGGAGGTTTTTTATAAGTTGATGGTTTATGTTAAGTAAGTTTATTAAGAAGTATAGTATTATATA
++
+BBBFFFFFFBFFFIIIIIIIIIIIBIFBFFFFIIBBFFFFFFFIIIIIIFFFBFFBBFFFIIBFFIIBFIIFIFIFFFFF<BF<BBFF7<<FFFFFFF
+@HISEQ:105:C2UE1ACXX:3:1101:5502:25591_AGA 1:N:0:CAGATC
+ATATGATTTTATTTTTAGGGATAATATTTTTTAAGTGAATTTTGATTTTTTGGTTAGTTATTTTGATGATGTGTAGAGGGTGTATAGTTTTTGGATAT
++
+BBBFBFFFFFFFFIIIIBBBFFFIIIIIIIIIIIBFFFIIIIIBFFIIIII<7BFFBFFFIIII<FF<FFBFFFFFB<<<BFBBBF<<BFFF00<BFB
diff -r 000000000000 -r 8db56d2f8b72 test-data/out_paired.log
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/out_paired.log	Thu Jun 21 15:20:14 2018 -0400
@@ -0,0 +1,37 @@
+# output generated by extract --bc-pattern=NNNXXX --stdin=input_read1.gz --read2-in=input_read2.gz --stdout out1.gz --read2-out=out2.gz --log=/tmp/tmpAvWtMd/files/000/dataset_20.dat
+# job started at Wed Jan  3 17:06:39 2018 on tzk-ThinkPad-T450s -- 9eecaab6-9562-4b29-8a2e-ae6c1034a14c
+# pid: 22903, system: Linux 4.10.0-42-generic #46~16.04.1-Ubuntu SMP Mon Dec 4 15:57:59 UTC 2017 x86_64
+# blacklist                               : None
+# compresslevel                           : 6
+# error_correct_cell                      : False
+# extract_method                          : string
+# filter_cell_barcode                     : None
+# filter_cell_barcodes                    : False
+# log2stderr                              : False
+# loglevel                                : 1
+# pattern                                 : NNNXXX
+# pattern2                                : None
+# prime3                                  : None
+# quality_encoding                        : None
+# quality_filter_mask                     : None
+# quality_filter_threshold                : None
+# random_seed                             : None
+# read2_in                                : input_read2.gz
+# read2_out                               : out2.gz
+# read2_stdout                            : False
+# reads_subset                            : None
+# reconcile                               : False
+# retain_umi                              : None
+# short_help                              : None
+# stderr                                  : <_io.TextIOWrapper name='<stderr>' mode='w' encoding='UTF-8'>
+# stdin                                   : <_io.TextIOWrapper name='input_read1.gz' encoding='ascii'>
+# stdlog                                  : <_io.TextIOWrapper name='/tmp/tmpAvWtMd/files/000/dataset_20.dat' mode='a' encoding='UTF-8'>
+# stdout                                  : <_io.TextIOWrapper name='out1.gz' encoding='ascii'>
+# timeit_file                             : None
+# timeit_header                           : None
+# timeit_name                             : all
+# whitelist                               : None
+2018-01-03 17:06:39,365 INFO Starting barcode extraction
+2018-01-03 17:06:39,377 INFO Input Reads: 100
+2018-01-03 17:06:39,377 INFO Reads output: 100
+# job finished in 0 seconds at Wed Jan  3 17:06:39 2018 --  0.60  0.05  0.00  0.00 -- 9eecaab6-9562-4b29-8a2e-ae6c1034a14c
diff -r 000000000000 -r 8db56d2f8b72 test-data/out_single.log
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/out_single.log	Thu Jun 21 15:20:14 2018 -0400
@@ -0,0 +1,38 @@
+# output generated by extract --bc-pattern=XXXNNN --stdin=/tmp/tmpAvWtMd/files/000/dataset_13.dat --stdout /tmp/tmpAvWtMd/files/000/dataset_14.dat --3prime --quality-filter-threshold 10 --quality-encoding phred33 --log=/tmp/tmpAvWtMd/files/000/dataset_15.dat
+# job started at Wed Jan  3 17:06:20 2018 on tzk-ThinkPad-T450s -- 8897b3b4-c6e2-4ee3-b6c0-71044a63b7e1
+# pid: 22794, system: Linux 4.10.0-42-generic #46~16.04.1-Ubuntu SMP Mon Dec 4 15:57:59 UTC 2017 x86_64
+# blacklist                               : None
+# compresslevel                           : 6
+# error_correct_cell                      : False
+# extract_method                          : string
+# filter_cell_barcode                     : None
+# filter_cell_barcodes                    : False
+# log2stderr                              : False
+# loglevel                                : 1
+# pattern                                 : XXXNNN
+# pattern2                                : None
+# prime3                                  : True
+# quality_encoding                        : phred33
+# quality_filter_mask                     : None
+# quality_filter_threshold                : 10
+# random_seed                             : None
+# read2_in                                : None
+# read2_out                               : False
+# read2_stdout                            : False
+# reads_subset                            : None
+# reconcile                               : False
+# retain_umi                              : None
+# short_help                              : None
+# stderr                                  : <_io.TextIOWrapper name='<stderr>' mode='w' encoding='UTF-8'>
+# stdin                                   : <_io.TextIOWrapper name='/tmp/tmpAvWtMd/files/000/dataset_13.dat' mode='r' encoding='UTF-8'>
+# stdlog                                  : <_io.TextIOWrapper name='/tmp/tmpAvWtMd/files/000/dataset_15.dat' mode='a' encoding='UTF-8'>
+# stdout                                  : <_io.TextIOWrapper name='/tmp/tmpAvWtMd/files/000/dataset_14.dat' mode='w' encoding='UTF-8'>
+# timeit_file                             : None
+# timeit_header                           : None
+# timeit_name                             : all
+# whitelist                               : None
+2018-01-03 17:06:20,360 INFO Starting barcode extraction
+2018-01-03 17:06:20,362 INFO Input Reads: 100
+2018-01-03 17:06:20,362 INFO Reads output: 72
+2018-01-03 17:06:20,362 INFO filtered: umi quality: 28
+# job finished in 0 seconds at Wed Jan  3 17:06:20 2018 --  0.58  0.06  0.00  0.00 -- 8897b3b4-c6e2-4ee3-b6c0-71044a63b7e1
diff -r 000000000000 -r 8db56d2f8b72 test-data/out_wl_paired.html
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/out_wl_paired.html	Thu Jun 21 15:20:14 2018 -0400
@@ -0,0 +1,1 @@
+<html> <head></head><body> <h1>Cell and Count Metrics</h1> <img src="OUT_cell_barcode_count_density.png" ><br /> <img src="OUT_cell_barcode_knee.png" ><br /> <img src="OUT_cell_barcode_counts.png" ><br /> </body></html>
diff -r 000000000000 -r 8db56d2f8b72 test-data/out_wl_paired.log
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/out_wl_paired.log	Thu Jun 21 15:20:14 2018 -0400
@@ -0,0 +1,40 @@
+# output generated by whitelist --bc-pattern=CCCNNNNNNNNXXXXX --subset-reads=0 --stdin=/tmp/tmpibtvD6/files/000/dataset_5.dat --read2-in=/tmp/tmpibtvD6/files/000/dataset_6.dat --expect-cells=5 --error-correct-threshold=3 --method=reads --plot-prefix=OUT --log=/tmp/tmpibtvD6/files/000/dataset_8.dat
+# job started at Sun Feb 25 10:50:16 2018 on bag -- e78e4e5b-e99e-426a-8a92-c8b3beeadf18
+# pid: 2385, system: Linux 4.13.0-32-generic #35-Ubuntu SMP Thu Jan 25 09:13:46 UTC 2018 x86_64
+# blacklist_tsv                           : None
+# cell_number                             : False
+# compresslevel                           : 6
+# error_correct_threshold                 : 3
+# expect_cells                            : 5
+# extract_method                          : string
+# filter_cell_barcodes                    : False
+# log2stderr                              : False
+# loglevel                                : 1
+# method                                  : reads
+# pattern                                 : CCCNNNNNNNNXXXXX
+# pattern2                                : None
+# plot_prefix                             : OUT
+# prime3                                  : None
+# random_seed                             : None
+# read2_in                                : /tmp/tmpibtvD6/files/000/dataset_6.dat
+# short_help                              : None
+# stderr                                  : <_io.TextIOWrapper name='<stderr>' mode='w' encoding='UTF-8'>
+# stdin                                   : <_io.TextIOWrapper name='/tmp/tmpibtvD6/files/000/dataset_5.dat' mode='r' encoding='UTF-8'>
+# stdlog                                  : <_io.TextIOWrapper name='/tmp/tmpibtvD6/files/000/dataset_8.dat' mode='a' encoding='UTF-8'>
+# stdout                                  : <_io.TextIOWrapper name='<stdout>' mode='w' encoding='UTF-8'>
+# subset_reads                            : 0
+# timeit_file                             : None
+# timeit_header                           : None
+# timeit_name                             : all
+# whitelist_tsv                           : None
+2018-02-25 10:50:16,016 INFO Starting barcode extraction
+2018-02-25 10:50:16,017 INFO Parsed 0 reads
+2018-02-25 10:50:16,019 INFO Starting - whitelist determination
+2018-02-25 10:50:17,208 INFO Finished - whitelist determination
+2018-02-25 10:50:17,208 INFO Starting - finding putative error cell barcodes
+2018-02-25 10:50:17,208 INFO Finished - finding putative error cell barcodes
+2018-02-25 10:50:17,208 INFO Writing out whitelist
+2018-02-25 10:50:17,208 INFO Parsed 100 reads
+2018-02-25 10:50:17,208 INFO 100 reads matched the barcode pattern
+2018-02-25 10:50:17,208 INFO Found 23 unique cell barcodes
+# job finished in 1 seconds at Sun Feb 25 10:50:17 2018 --  2.35  0.08  0.00  0.00 -- e78e4e5b-e99e-426a-8a92-c8b3beeadf18
diff -r 000000000000 -r 8db56d2f8b72 test-data/out_wl_paired.tresh.tab
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/out_wl_paired.tresh.tab	Thu Jun 21 15:20:14 2018 -0400
@@ -0,0 +1,7 @@
+count	action
+1	Selected
+5	Rejected
+8	Rejected
+11	Rejected
+14	Rejected
+20	Rejected
diff -r 000000000000 -r 8db56d2f8b72 test-data/out_wl_paired.txt
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/out_wl_paired.txt	Thu Jun 21 15:20:14 2018 -0400
@@ -0,0 +1,1 @@
+TTT	AAA,AAG,AAT,AGA,AGG,AGT,ATA,ATT,GAG,GGT,GTA,GTG,GTT,TAA,TAG,TAT,TCT,TGA,TGG,TGT,TTA,TTG	15	2,4,1,6,3,4,6,8,3,2,2,2,8,2,3,6,1,1,2,4,8,7
diff -r 000000000000 -r 8db56d2f8b72 test-data/out_wl_single.html
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/out_wl_single.html	Thu Jun 21 15:20:14 2018 -0400
@@ -0,0 +1,1 @@
+<html> <head></head><body> <h1>Cell and Count Metrics</h1> <img src="OUT_cell_barcode_count_density.png" ><br /> <img src="OUT_cell_barcode_knee.png" ><br /> <img src="OUT_cell_barcode_counts.png" ><br /> </body></html>
diff -r 000000000000 -r 8db56d2f8b72 test-data/out_wl_single.tresh.tab
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/out_wl_single.tresh.tab	Thu Jun 21 15:20:14 2018 -0400
@@ -0,0 +1,3 @@
+count	action
+1	Rejected
+4	Selected
diff -r 000000000000 -r 8db56d2f8b72 test-data/out_wl_single.txt
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/out_wl_single.txt	Thu Jun 21 15:20:14 2018 -0400
@@ -0,0 +1,44 @@
+# output generated by whitelist --bc-pattern=CCCCCCCCNNNNNNNN --subset-reads=0 --stdin=/tmp/tmpibtvD6/files/000/dataset_1.dat --method=reads --plot-prefix=OUT --3prime
+# job started at Sun Feb 25 10:49:56 2018 on bag -- cb0db520-8a4e-4040-aa88-93efc0718fa8
+# pid: 2217, system: Linux 4.13.0-32-generic #35-Ubuntu SMP Thu Jan 25 09:13:46 UTC 2018 x86_64
+# blacklist_tsv                           : None
+# cell_number                             : False
+# compresslevel                           : 6
+# error_correct_threshold                 : 1
+# expect_cells                            : False
+# extract_method                          : string
+# filter_cell_barcodes                    : False
+# log2stderr                              : False
+# loglevel                                : 1
+# method                                  : reads
+# pattern                                 : CCCCCCCCNNNNNNNN
+# pattern2                                : None
+# plot_prefix                             : OUT
+# prime3                                  : True
+# random_seed                             : None
+# read2_in                                : None
+# short_help                              : None
+# stderr                                  : <_io.TextIOWrapper name='<stderr>' mode='w' encoding='UTF-8'>
+# stdin                                   : <_io.TextIOWrapper name='/tmp/tmpibtvD6/files/000/dataset_1.dat' mode='r' encoding='UTF-8'>
+# stdlog                                  : <_io.TextIOWrapper name='<stdout>' mode='w' encoding='UTF-8'>
+# stdout                                  : <_io.TextIOWrapper name='<stdout>' mode='w' encoding='UTF-8'>
+# subset_reads                            : 0
+# timeit_file                             : None
+# timeit_header                           : None
+# timeit_name                             : all
+# whitelist_tsv                           : None
+## 2018-02-25 10:49:56,061 INFO Starting barcode extraction
+## 2018-02-25 10:49:56,061 INFO Parsed 0 reads
+## 2018-02-25 10:49:56,062 INFO Starting - whitelist determination
+## 2018-02-25 10:49:57,383 INFO Finished - whitelist determination
+## 2018-02-25 10:49:57,383 INFO Starting - finding putative error cell barcodes
+## 2018-02-25 10:49:57,383 INFO Finished - finding putative error cell barcodes
+## 2018-02-25 10:49:57,383 INFO Writing out whitelist
+AAAAAAAA	AAAAAACA,AAACAAAA,AATAAAAA	3	1,1,1
+ACAAAAAC		2	
+ACAACAAA		2	
+TTACTTAA	TTACTAAA	2	1
+## 2018-02-25 10:49:57,383 INFO Parsed 100 reads
+## 2018-02-25 10:49:57,383 INFO 100 reads matched the barcode pattern
+## 2018-02-25 10:49:57,383 INFO Found 95 unique cell barcodes
+# job finished in 1 seconds at Sun Feb 25 10:49:57 2018 --  2.25  0.06  0.00  0.00 -- cb0db520-8a4e-4040-aa88-93efc0718fa8
diff -r 000000000000 -r 8db56d2f8b72 test-data/scrb_extract.fastq.gz
Binary file test-data/scrb_extract.fastq.gz has changed
diff -r 000000000000 -r 8db56d2f8b72 test-data/scrb_seq_barcodes
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/scrb_seq_barcodes	Thu Jun 21 15:20:14 2018 -0400
@@ -0,0 +1,384 @@
+AAAACT
+GCTAGA
+AAAATC
+GCTTAC
+AAACAT
+GGACAT
+AAACTA
+GGCAAT
+AAAGTT
+GGGATT
+AAATAC
+GTACAC
+AAATCA
+GTCAAG
+AAATGT
+GTGACT
+AAATTG
+GTTCGA
+AACAAT
+TAGTGG
+AACATA
+TCCAAC
+AACTAA
+TCGAAG
+AAGATT
+TCTGCA
+AAGTAT
+TTCCTC
+AAGTTA
+TTGTCC
+AATAAC
+TTTGGC
+AATACA
+CCAACC
+AATAGT
+CCTTCC
+AATATG
+CTCTCC
+AATCAA
+GGACCA
+AATCTT
+GTACCG
+AATGAT
+ACCCCC
+AATGTA
+ACCCGG
+AATTAG
+ACCGCG
+AATTCT
+ACCGGC
+AATTGA
+ACGCCG
+AATTTC
+ACGCGC
+ACAAAT
+ACGGCC
+ACAATA
+ACGGGG
+ACATAA
+AGCCCG
+ACTAAA
+AGCCGC
+ACTATT
+AGCGCC
+ACTTAT
+AGCGGG
+ACTTTA
+AGGCCC
+AGAATT
+AGGCGG
+AGATAT
+AGGGCG
+AGATTA
+AGGGGC
+AGTAAT
+CACCCC
+AGTATA
+CACCGG
+AGTTAA
+CACGCG
+ATAAAC
+CACGGC
+ATAACA
+CAGCCG
+ATAAGT
+CAGCGC
+ATAATG
+CAGGCC
+ATACAA
+CAGGGG
+ATACTT
+CCACCG
+ATAGAT
+CCACGC
+ATAGTA
+CCAGGG
+ATATAG
+CCCACG
+ATATCT
+CCCAGC
+ATATGA
+CCCCAC
+ATATTC
+CCCCCA
+ATCAAA
+CCCCGT
+ATCATT
+CCCCTG
+ATCTAT
+CCCGAG
+ATCTTA
+CCCGGA
+ATGAAT
+CCCTGG
+ATGATA
+CCGAGG
+ATGTAA
+CCGCAG
+ATTAAG
+CCGCGA
+ATTACT
+CCGGAC
+ATTAGA
+CCGGCA
+ATTATC
+CCGGGT
+ATTCAT
+CCGGTG
+ATTCTA
+CCGTCG
+ATTGAA
+CCGTGC
+ATTGTT
+CCTCGG
+ATTTAC
+CCTGCG
+ATTTCA
+CCTGGC
+ATTTGT
+CGACCC
+ATTTTG
+CGACGG
+CAAAAT
+CGAGCG
+CAAATA
+CGAGGC
+CAATAA
+CGCACC
+CATAAA
+CGCAGG
+CATATT
+CGCCAG
+CATTAT
+CGCCCT
+CATTTA
+CGCCGA
+CTAAAA
+CGCCTC
+CTAATT
+CGCGAC
+CTATAT
+CGCGCA
+CTATTA
+CGCGGT
+CTTAAT
+CGCGTG
+CTTATA
+CGCTCG
+CTTTAA
+CGCTGC
+GAAATT
+CGGACG
+GAATAT
+CGGAGC
+GAATTA
+CGGCAC
+GATAAT
+CGGCCA
+GATATA
+CGGCGT
+GATTAA
+CGGCTG
+GTAAAT
+CGGGAG
+GTAATA
+CGGGCT
+GTATAA
+CGGGGA
+GTTAAA
+CGGGTC
+GTTATT
+CGGTCC
+GTTTAT
+CGGTGG
+GTTTTA
+CGTCCG
+TAAAAC
+CGTCGC
+TAAACA
+CGTGCC
+TAAAGT
+CGTGGG
+TAAATG
+CTCCCG
+TAACAA
+CTCCGC
+TAACTT
+CTCGGG
+TAAGAT
+CTGCGG
+TAAGTA
+CTGGCG
+TAATAG
+CTGGGC
+TAATCT
+GACCCG
+TAATGA
+GACCGC
+TAATTC
+GACGCC
+TACAAA
+GACGGG
+TACATT
+GAGCCC
+TACTAT
+GAGCGG
+TACTTA
+GAGGCG
+TAGAAT
+GAGGGC
+TAGATA
+GCACCC
+TAGTAA
+GCACGG
+TAGTTT
+GCAGCG
+TATAAG
+GCAGGC
+TATACT
+GCCACC
+TATAGA
+GCCAGG
+TATATC
+GCCCAG
+TATCAT
+GCCCCT
+TATCTA
+GCCCGA
+TATGAA
+GCCCTC
+TATGTT
+GCCGAC
+TATTAC
+GCCGCA
+TATTCA
+GCCGGT
+TATTGT
+GCCGTG
+TATTTG
+GCCTCG
+TCAAAA
+GCCTGC
+TCAATT
+GCGACG
+TCATAT
+GCGAGC
+TCATTA
+GCGCAC
+TCTAAT
+GCGCCA
+TCTATA
+GCGCGT
+TCTTAA
+GCGCTG
+TGAAAT
+GCGGAG
+TGAATA
+GCGGCT
+TGATAA
+GCGGGA
+TGATTT
+GCGGTC
+TGTAAA
+GCGTCC
+TGTATT
+GCGTGG
+TGTTAT
+GCTCCG
+TGTTTA
+GCTCGC
+TTAAAG
+GCTGCC
+TTAACT
+GCTGGG
+TTAAGA
+GGACGC
+TTAATC
+GGAGCC
+TTACAT
+GGAGGG
+TTACTA
+GGCACG
+TTAGAA
+GGCAGC
+TTAGTT
+GGCCAC
+TTATAC
+GGCGAG
+TTATCA
+GGCGCT
+TTATGT
+GGCGGA
+TTATTG
+GGCGTC
+TTCAAT
+GGCTCC
+TTCATA
+GGGACC
+TTCTAA
+GGGAGG
+TTGAAA
+GGGCAG
+TTGATT
+GGGCCT
+TTGTTA
+GGGCGA
+TTTAAC
+GGGCTC
+TTTACA
+GGGGAC
+TTTAGT
+GGGGCA
+TTTATG
+GGGGGT
+TTTCAA
+GGGGTG
+TTTCTT
+GGGTCG
+TTTGTA
+GGGTGC
+TTTTAG
+GGTCCC
+TTTTCT
+GGTGCG
+TTTTGA
+GGTGGC
+TCTTTC
+GTCCCC
+TTGGAT
+GTCGCG
+ACCGTA
+GTCGGC
+AGACCT
+GTGCGC
+AGGGAT
+GTGGCC
+ATCGAG
+GTGGGG
+CAAGCT
+TCCCCG
+CACCAA
+TCCCGC
+CAGTCA
+TCCGGG
+CATCAG
+TCGCGG
+CATGGT
+TCGGCG
+CCACAT
+TCGGGC
+CCGATT
+TGCCCC
+CGACTT
+TGCGCG
+CGATTG
+TGCGGC
+CTAGTG
+TGGCCG
+CTTCTG
+TGGCGC
+GAAGAC
+TGGGCC
+GATCGT
+TGGGGG
diff -r 000000000000 -r 8db56d2f8b72 test-data/scrb_seq_fastq.1.gz
Binary file test-data/scrb_seq_fastq.1.gz has changed
diff -r 000000000000 -r 8db56d2f8b72 test-data/scrb_seq_fastq.2.gz
Binary file test-data/scrb_seq_fastq.2.gz has changed
diff -r 000000000000 -r 8db56d2f8b72 test-data/t_R1.fastq
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/t_R1.fastq	Thu Jun 21 15:20:14 2018 -0400
@@ -0,0 +1,400 @@
+@HISEQ:105:C2UE1ACXX:3:1101:11160:2245 1:N:0:CAGATC
+AAAAGTAGTTAATATATTAGATTTGTTTGATAGTGGTAGTATATATTTTTTATTTTAGTATTTAGGAGGTAGAGGTAGATGAATTTTTGAGTTTAAAGTTA
++
+BBBFFFFBFFFFFIIIIIIBIIIIBIFFBFIIBBFFFFFFFFIIIIIIIIIIIIIIIBFIIIIIB7BBBFBBFFFF77<F7BFFFFFF7B7BBFFFF7<BF
+@HISEQ:105:C2UE1ACXX:3:1101:19338:2197 1:N:0:CAGATC
+TTTTTTTTTAGAGGGATTAGTTTTTTTTATTGAGGTTTTTGAAAGTTGTTGTATGTTAATTGTTTTTAGAATGTTGGGTATAAGTAGGATTTAGGTCTATT
++
+BBBFFFFFFB0<BF7BBBF7BFFIIIII7BF'0<0BBFFF'<BB'<B7<B07<B7<BFBBF0<BBBBB0<<B0BB<<000<BF00<<'0<BBB0'00BBF#
+@HISEQ:105:C2UE1ACXX:3:1101:19467:2281 1:N:0:CATATC
+TTGGTTAGGGTGAGATGTATAGTTTGGATTTTAGTGATTTTTGTAAAGGGGGAAAAGAATGGAGTTTTGGGTGTAGTGAGAGGTTATAGGAGTAGGGATTT
++
+<B<<FFFBBFFFFFFFFFIFIBFFI<<BFFFIIBBBFFIIIIBFFIIBBF7BBFFFBFFF77BBFBFF777BBBBBB<<<B<7<7BBF77<7<700007BB
+@HISEQ:105:C2UE1ACXX:3:1101:7009:2740 1:N:0:CAGATC
+AAGTTTTGTTTTTTATTTGGAGGTTATGGAATGTTAAGTAAGGTTTTTTTGGGTTTTGTTATTTATTTGATAATTGTGATTGTAATGTTAATAAGGGATAG
++
+BBBFFFFFFFFFFIIIIIB<FFFFFFIBBFIIFFFIIFIIIFFIFFIIII<0<BBFFBFFFFFFFFFF<BBFFFF<BBBBF7BFFF<BBFFFFF<00<BB0
+@HISEQ:105:C2UE1ACXX:3:1101:13708:2613 1:N:0:CAGATC
+ATATAATAGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAGATAATTAATTTTTAAAATTTTTTTTTTTTTAATAAAA
++
+BBBFFFFFBFFFFIIIIIIIIIIIFFFFFB7B007BB0''''''0077BFF7'077BF0''0''''''00''00''''00'<BBBFBBFFFFF########
+@HISEQ:105:C2UE1ACXX:3:1101:19067:2707 1:N:0:CAGATC
+GTTTTTTTATTTGATATTTTAAAGGTTTTTTTTTTTTTTTTAGAAAATTTTTTTTAGTAAGATAGATTTTAAAGGGTTTGTTTTTTTTTTTTTTTTTTTTT
++
+BBBFFFFFFFFFBBFFFFIIIFIFFIFFIIIIIIIFFFFFB7'0<B0<BBFF'7<0'0<<''0<'0'0<BBB<<B'7'0'0'0<BFFFFFFFFFFFFFFFF
+@HISEQ:105:C2UE1ACXX:3:1101:4999:3182 1:N:0:CAGATC
+GTTTTATGAGGATTTTAGGGGAGTGATTGTTTAAAGTTTATAAGATTTATGATTTATATATAGTTAGAATAGTATGTGTTAAATAAATATAAAGGGAGAGG
++
+<BBFFFFBFFFFFFIIFBBBFFFIIFFIBFFIFIIBFFIIIIIFFIIIIIBFFIIIIIIIIIBFFIBFIII<FFFBFBFFFFFFFFFFFFFFF<07<7<<7
+@HISEQ:105:C2UE1ACXX:3:1101:16790:3145 1:N:0:CAGATC
+TATAGAGGTATTTTGTTATTTTGTTTTAGTTATTGCGGGTTAGAGTAGATGGTTATTTTTAGTAGAGTATTGTTTGTTGTTTTTTATATGTGGTATAGAGG
++
+BBBF<BBFFFFFFI<FFFIFIIBBFFIIBFFFFI<BBBFFFF<FFFF7FF70<BFFIFIIF7BFBB<FFBF'BBF'<<0<BFFBBBBBF'<70<<<B####
+@HISEQ:105:C2UE1ACXX:3:1101:18065:3106 1:N:0:CAGATC
+AAGTATTTGTTATATATATTTTAAAGTTTTTTTTTTTTTTAGGAATTTTTTTTTATAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTTT
++
+BBBFFFFFBFFFFIIIIFIIIIIIIFIFIIIIIIIIIIFF''00<<BB'<<'7''000<BFFF77<77BFF77BFBB07<7<BFFFFFFFF##########
+@HISEQ:105:C2UE1ACXX:3:1101:2300:3263 1:N:0:TAGATC
+TTATTTTTAATAAAATTTTTATTATTTAATTTATTAGTTAATATTTAGGAGTTTTATGTTGTGGTAAAATTTTGTTAGAGAGATAGAGAAAGTATTTAGTT
++
+BBBFFFFFFFFBFFIIIIIIBIBBFFI0<FFFBFF70B00<'0<FFFBBBBFF''0B0BB000'7BBFFFFII'<BF0<'<''07'70BBF'7BBBFB7<B
+@HISEQ:105:C2UE1ACXX:3:1101:5605:3427 1:N:0:CAGATC
+AGATGAGAGGTATAGGATGTGGGGAGTTTTAGTAAGATTTATAGATAAGAAGTGGTTCGGTTATAGGATTTGTTTTAGATTTTTAGATTTTTTTGTGTAGA
++
+BBBFBFFFFFFFFFFBFFFFIIIIIIIBFFFBFFIBFFIIIIIFFIIIFFIBF7BFBFBBFFIFF<<FFFFBBFFBF0<BFFFFF7<BFFFFFF0B7BF0<
+@HISEQ:105:C2UE1ACXX:3:1101:8129:3589 1:N:0:CAGATC
+TTTTAGTTTTTAGTTAGGATTATACGTTTATTGTGATAAAAGAGTTTTTTGATTTATCGGGTTATGTTAGGGTTTATTGATATTAGGGAATTTGAAGAGAT
++
+BBBFFBFFFFFFBFFFBBFIIFIIFBFFFFII<BBFFFIIIBFFIFIIIIBBFFIIII<7<FBFF<FBF<7<BBFFFF7<BFFFF700<BBFF0<B'<07B
+@HISEQ:105:C2UE1ACXX:3:1101:14304:3866 1:N:0:CAGATC
+GTGTTTATATAGGGGATTTTTGAGTTTGATAGGTTGTTTTTGTAGAGGGTAGAATTTTGTGGAAATGTTGGTATTGGTTAAGGGGTTTTAGTGAAGAATAA
++
+<BBFFFFFFFFFFFFFFFFII<BBFFFBFFIFBFFBFFFII7FFFFFFFIF<BFIIII<F<BBFIFBFB7<BFFFBBBBBF777<B7BBF7B<BB7BBFFF
+@HISEQ:105:C2UE1ACXX:3:1101:12720:4398 1:N:0:CAGATC
+GTATGTGTGTGTGTGTGTGTATTTAATTGAAGTTGGGTTTGGTGATATATATGTTTAATTTTAGTATTTTAGTGGTAGAGGTAGGTTAATTTTTGTTGAGT
++
+<BBFBFFFFFFFFIFIFIFFFFFIIFII0BFBFFB7BFFF<BFFFFIIIIIIBFIIIIFIIII<FIFIIIFBFBBFB7B<<BB7<B<BFFFFFF0<B0<7B
+@HISEQ:105:C2UE1ACXX:3:1101:14945:4439 1:N:0:CAGATC
+AGTGTTGAGTGGAGTATTAGAGAAGAGAAATAAGATAATAAAGTAATAGTTGTGATTAGGAGGTTTTTATAAGTTGATGGTTTATGTTAAGTAAGTTTATT
++
+BBBBFFBFFFFFFFFFFIIBIFFIFFBFFIIIIBFFIIIIIIBFFIIIBFFBFFFIIIFBFFBFBFFIIIIIFFFBBF77BBFFF7BBFF<BBF<<BFFFB
+@HISEQ:105:C2UE1ACXX:3:1101:8616:4508 1:N:0:CAGATC
+AGAAATTTTGGGGGTGTAGGAGTGGTAGGATAGGAGTGTTGTTTTGTAATAGTTTTTTTTGAGGTTTAATAGGTAGGGTAGTTATTTTTAGTATTGTAAGG
++
+BBBFFFFFFBBBFFFIIFFFIFFFIIFFIIFIFBFFFIIF<FBFI<FFIIIBFFFFFFFF077<B<BBBFF<<BBBBBB<7B<BFFFFFF0BBFF0<BF00
+@HISEQ:105:C2UE1ACXX:3:1101:18975:4834 1:N:0:CAGATC
+TATAAATGGTAATTTTGTAATTTAAAGATTTAAAAGTAATTATTGGTAATAGTTATTTGTGGGAGGTTGAGGTAGGGGGATTTTTGTAGAGATCGGAAGAG
++
+BBBFFFFBBFFFFIIIBFIIIIIFIIFFFFIFIIIBFIIIIIIIB<FFIFIBFFFIIIBFFBFFFII<<BFBFFFFIFF<BBBFF0BB7<<<BF707B0B0
+@HISEQ:105:C2UE1ACXX:3:1101:4984:5374 1:N:0:CAGATC
+TGTATCGAGGTTTGAATGAGAGTGGTATTTTTGTTATTTGTTAGTTAATGGTTTTGAGTATTAGTTTGGAAAATGATAATAAGTATTAGTTGAGGTGTTTG
++
+B<BFFFBFFFFBF<FFFBFFFFFFFIFFFIII<BFFIIIBFFFFFFIIIBBFFFIBBBFFFIIBFFF<<BFFFFBBFFFFFF<BBFFF<BB7<7<BBBBF0
+@HISEQ:105:C2UE1ACXX:3:1101:14432:5660 1:N:0:CAGATC
+TAAAATAAAAGATAGAGATAGAATAAAAGATAGAGATTTTAATTTTTCGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATAAA
++
+BBBFFFFFFFBFFIBFFFIIBIIIIIIIBFFIBFBFFFFIFFIIIIIFBFFIIIIIIFFFFFFFFFFFFFFFFFFFFF<BFBBBBBFFFB###########
+@HISEQ:105:C2UE1ACXX:3:1101:17410:5545 1:N:0:CAGATC
+ATTATTTTTTTGAAGTTGTTAGGGTTATTTAGTGAAATTTGAGTATATTTAATTATTTTAGATGTTAGTTTTATTTAGGTTTTATTTTATTAGAGGTTTGG
++
+BBBFFFFFFFB<FFFIFBFFFBBBFFFFIII<FBFIIIII7FBFFFIIIIIIIIIIIIIF<FF<FFFBFFIFFFFFF77BBFFFFFFFFFFF'<70<BB##
+@HISEQ:105:C2UE1ACXX:3:1101:12336:6058 1:N:0:CAGATC
+ATTTAGATGATGGTTTTTTTATTTGATATTTTAAAGGTTTTTTTTTTTTTTTTTTAAAAAATTTTTTTTATAAAAATAAATTTTAAAGGGTTTTTTTTTTT
++
+BBBFFBFFBFFBBFFFIIIIIIIIBFFIIIIIIIIBFFFFIIIIIFFFFFFFFF700<BF0BBFFF0<70''00'0'000'<<'<B<00'0'00007<BFF
+@HISEQ:105:C2UE1ACXX:3:1101:5999:6265 1:N:0:CAGATC
+TATATTGTTATATATTTGTGTTTTTTTTGAATTTATTTTTTGTTTATTAGTTTTTGTGGTTGATAGGGTTTTTGGATATTGGGTTGTTTTTATATATAATG
++
+BBBFFFBFFFFFFIIIIBIFIFIIIIII<BFFIIFIIIIII7BFFFIIFBFFIII<B<BFB<BBF<BBBBBFF00<BFFF700B<7<BFFFFFFFFFFFF0
+@HISEQ:105:C2UE1ACXX:3:1101:5836:6568 1:N:0:CAGATC
+ATTTGGATGTTAAGGATTGGTTTTTTTTTTGATTTAGGGTATTGTTAGATAGTATAGATTTTACGGAGTTTTGTATTTGAAAGGTTGTTGGTATGTTTTTT
++
+BBBFBBFFFFFFFFFFFFBFIFIIIIIIII'0<FFB<BBFFBF7BFF7BFF<BBFF<BFFFFFF<<BBFBBF7BBBFF'<BB0'<B0<B0'7<B<BFFFFF
+@HISEQ:105:C2UE1ACXX:3:1101:15437:6678 1:N:0:CAGATC
+AAAATAAGAAATTAGTTAAGAGGAGGAGGTTGTAGTGGGGGTAAGGAAGGAGAGTTTTTGCAAGTTTGGAAATTTGAAAATTATTGTTTTTTATGTTTAGA
++
+BBBFFFFBFFFFFIFFFIIBFFFFFIIIIIB<FFFFFIIIIFBFBBFFFFFFFFFBFFF<BFFBFBF<7BBFFFF<BBFFFFFFF7BBFFFFFF0BBFF##
+@HISEQ:105:C2UE1ACXX:3:1101:12432:6996 1:N:0:CAGATC
+AAGTTATTTATGAGATTAGTTTATAGTAAATTAAAAAGGGTCTTAGTATTTTGATTATGAAATTAATTATTTTAGTAATATTTGAAGTTGTAATTTTAGAT
++
+BBBFFFFFFFFBFBFFIIBIIIIIIBFIIIIIIIIIIFBFFFFFIFFIIIIIBFFIIIBFIIIIIIIIIIIIIIBFFIIIIII7BF<BF<BFFFFFFF0BB
+@HISEQ:105:C2UE1ACXX:3:1101:19878:7022 1:N:0:CATATC
+GTTGTATTCGCGTTGTTTTTGTAGGGTTTATGTATTTTTTTTTTTGGTGGAGAGTTTCGTTGAGTGATTTTTTAGTTCGTTTTTCGTTTATTATTTTTCTT
++
+<BBBFFFFFBFBFFBFFIII<BFBFFFFFFF'BBFIIIIIIIIFF''00'7'<7<<B<'7B'0'<0<<BFFFF7'<B<'7'7BB7'0BB0BB<'0BB####
+@HISEQ:105:C2UE1ACXX:3:1101:6837:7574 1:N:0:CAGATC
+TTTGAAGATTTTATCGTTAGTTTTTTAGTTTTTATTTGGAGTTGATTTTGAGGTGTTAGTTGTTGTTGTTTTTGTTAGAGGTTAGGTTGTTTTTTATTTGG
++
+BBBBFFFFFFFFFIIBFFIBFFIIIIF<FFIIIFFII<0BBFBBFFFIIBBBBFFFFFBFF<FF<FF<BFFFF7BBB7<77B<B<7<BBBFFFFFFFFF##
+@HISEQ:105:C2UE1ACXX:3:1101:15853:7717 1:N:0:CAGATC
+GTTTTTTTTTTATATTGTGGTGATAAGTGTTTAAGGTGGGTGAAGGTAGAATTAATCGTAGTTGTGGCTGTTAGTGTTTAGTATATTGTTTTTTGTTAAGG
++
+BBBFFFFFFFFFFFFI<BBFFFBBFFBB7BBFFFB<BFFIIFBFBBBF<BFFFFFFF7<B<BB7<BB'7<BBB<BB<BBB0<<BFFF'<BBFFF'<BBF##
+@HISEQ:105:C2UE1ACXX:3:1101:2440:7931 1:N:0:CAGATC
+ATTTGAAAAGTGTTATAGATATTAGAAAGGTATGGAGATGAGAGGTATAGGATGTGGGGAGTTTTAGTAAGATTTATAAGATCGGAAGAGCACACGTCTGA
++
+BBBFBFFFFFFFFFIIIBFFIIIIBFFIBBFFIBBFFIFFFFFFFIFFIBBFFFFFFFIFIIBFFIBFFFBFFFFFFFF7BBF70<B0<7<BBBF0<BF7<
+@HISEQ:105:C2UE1ACXX:3:1101:6407:7896 1:N:0:CAGATC
+TTTATAGGTTTGGGTTGAGGATATGTATTGGGAGTTATTAGAGGGTTATAGTTAGGAGAGATCGGAAGAGCACACGTCTGAACTCCAGTCACCAGATCATC
++
+BBBFFFBBFFF<BBFFBFFFFFIIBFFIIBBBFFFFFIFFBFFFFIBFFIBFFIBBFBFFFFI<BBF<F<BFFFFBFBF<BBFFFFB<BBFFFB0<BFFBB
+@HISEQ:105:C2UE1ACXX:3:1101:19497:7952 1:N:0:CAGATC
+ATACGTAGATGTTTAAAAGTTTAAATAAATGTATTTAGAGGTTTATGAGGTTTATGGTTAAGTGGAAGATCGGAAGAGCACACGTCTGAACTCCAGTCACC
++
+BBBFBFFBFFBFFFIIIIBIIIIIIIIIII<BFFIIFBFBFFFFFIBFBBFFFIIB7FFFIBFBBBFFFFFBBBFB<0<BFFF7<BB7BBBFFFF<BBFFB
+@HISEQ:105:C2UE1ACXX:3:1101:3853:8232 1:N:0:CAGATC
+GGTTAGGTTGTTGTTGTATTTAGAGGTTTTTAGGAGTTGTTTTTGAGTTGTTGTTTATTTAGTTTGTCGGTAGAGATCGGAAGAGCACACGTCTGAACTCC
++
+<<BBFBFFFBFFBFFBFFFIIF<FBFIFFIIFBBFFIFBFFFIIBFBFFBFFFFFIFIIII<FFIBFI<<BF<BB<BF70<B0<7BBFFF0BBB7BBFFFF
+@HISEQ:105:C2UE1ACXX:3:1101:7442:8079 1:N:0:CAGATC
+GGTGTTTGATTTTTTTGAAATTATGTCGGGGTATATTGAGGGTTAGGTTTTATGGGTAGTATTTTATTATTTTTTTGTTGTTTGGAGTTTCGGTTTTGGAT
++
+BBBFFFFBFFFFFFIIBFFIIIII<FFBBFFFFFIFF7<<BFF<BBBFFFIFF7<BFFBFFFFFFFFFFFFFFFFF0<B0BBB'000<7BF00<<<B''0B
+@HISEQ:105:C2UE1ACXX:3:1101:14324:8171 1:N:0:CAGATC
+TGGTTGTAGTTTTTTATTGGTGTGTGTGTGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGTGATAGTTTGTTGGGGATTGTTTTTTGTAGGACG
++
+B<<FFBFFFFFFFIIFII<<BFFFIFFFFFFF<FBFFFFIFIIFFIFIIIFIIIFIFFFFFFFFFBBB<BBB7BBB0<B70''7<<'<BBFF#########
+@HISEQ:105:C2UE1ACXX:3:1101:3147:8365 1:N:0:CAGATC
+AGTTATAATTGTTTTAAGAGTTATCGTGTGGGTATTGGGAGATTGGATGAATGAAAAGTGTATTTAATTGGTGAGTTATATTTTTTGTTCTTTGGTTTTCG
++
+B<BFFFFFFFBFFFIIIBFFFIFIIBFBFFFFIFFIB<BFFFFFB7BFBFFIBFFII<FBFFFIIIIII<7BBFFBBBFFFFFFFF0BBFFFF0'7BBFF#
+@HISEQ:105:C2UE1ACXX:3:1101:7150:8384 1:N:0:CAGATC
+GAGTAGTAGTTTTTGTGTAGGTTTTGGTTTGTGTGGTATTAGTAGGTAGTAGTGTGTTAGTTGGAGCGATAGTAGTAAGTTATGGTTATTGTTTATTATTA
++
+BBBFFFFFFFFFFIBFBFFFFFFFFB<FFF<BBFFFFFFIFBFIFFFIIIIFFFIFIFF<FF7<BFFFFFFBBFBBBF<BBFF77<BBFF7BBFFFFFFFB
+@HISEQ:105:C2UE1ACXX:3:1101:11512:8610 1:N:0:CAGATC
+TGTGTTTTGAAGTTGGCGGAGTTCGCGTTTTTAGGAATTTTGTTTTGGAACGGTTTGGTCGGGGTTTTCGTTTTTTTTTGTAGAAGTGTAGGAGATGTTGT
++
+B<BFFFFF<FFBFFBBFFFFBFFFBFFFFFIII<7BFFIII7BFFI00<BFBBBBB77<B0<<<B7BBB7BFFFFFFFF'7<000'<'0B'0<<BB0<B<B
+@HISEQ:105:C2UE1ACXX:3:1101:18380:8734 1:N:0:CAGATC
+GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTTTTGTTTAAAATTTTTTTTTTTTTTTTTTTTCATTTTTTTTTTTAAAAAATTTTTTTTTTTAAATTT
++
+<BBFFFFFFFFFFIIIFFFFFFFFFFFF0''0''''''00'07B<'0<BFFBB77BFB###########################################
+@HISEQ:105:C2UE1ACXX:3:1101:18629:8512 1:N:0:CAGATC
+TGAATTAATGAATTTTAAAAAAAAAGAAAGTAAGTTGTTTTTAGGATTGATATTTAGAGTTAATTTTTTGAGTTTTTTTGTTTGTTTAGGTTTTGGTTTAT
++
+B<BFFFFFFBFFFIIIIIIIIIIII<FFIBFFFBFF7FFFIIF<<BBF7BFFIIIF7B<BBFFFFFFFF0<7BBBFFFF'0BB'0<B<'0<<B'''7BBBB
+@HISEQ:105:C2UE1ACXX:3:1101:5146:8981 1:N:0:CAGATC
+TTTAGGTTTTAGTTGTTGTTGTTTGTTTTGTATTAGTGTAGTTATAATTTTTTTGTTGATTTTGTTGTTTTTAGAAGGTTTGGGGTGAGTTTAGTATGAGT
++
+BBBFBBFFFFFBFF<FF<BFBFFI0BFFI0BFFFF<BBFFFFFFIIIIIIIIII7BF7BFIII<BF7BFFFFF0<<7'<<B00'0<<77BBBF'<BB0<0B
+@HISEQ:105:C2UE1ACXX:3:1101:3344:9104 1:N:0:CAGATC
+TAGATGTTGAGTGTTTGTTTTGTGTTAGGTATTAGGTGGGATTAGGTGGTTATTATCGAGTTTTTAGGAGAGAGTATAGTTGTAAGCGGACGATAATAATT
++
+BB<FFFFFBFBFFFFFBFFIIBFBFFFBBFFFFFBBFFFIIFFFFBFFFIFFIIIII<FBFBFIIF<<BBFFFFFBBF<BB7<BF0<007B7<BFFFFFFF
+@HISEQ:105:C2UE1ACXX:3:1101:8326:9445 1:N:0:CAGATC
+TTTAGGAATTATATATTTTTTATATATTATTAAAGTGATTGGTTAGGAAATTAAAGTTTATTTGGAAGGTATTGTTTTTGAAAATGAAGTTATGTTTTTGG
++
+BBBFB<FFFFFFFIIIIIIIIIIIIIIIIIIIIIBFFFFI<BFFFBBFFIFIIIIFIFIFIII<7BFBBFFFFBFFFIF7BFFFF7BB<BBFF<BBFFF##
+@HISEQ:105:C2UE1ACXX:3:1101:2097:9536 1:N:0:CAGATC
+TTGGATTTTTTGGTTTGATAAGGAGTTTTGTAGGTTAAAGAATGTTTTTTAAGGGATTTTTGTTATGTGATTAGTTAATGGGATTTTATTTAAGTTTGGTT
++
+BB<BFFFFFFFBBFFFBFFIIFBFFIFFIBFIFFFFFIIBFFIFFFIIIIII<<BFFFIFF<FFFFBFBFFFFBFBFFF700<BFFFFFFFFF<BBF<0BB
+@HISEQ:105:C2UE1ACXX:3:1101:16351:9944 1:N:0:CAGATC
+TTGGACGGGATGGTTGTGGTAAAGTTTTAATAGTTTTATTGGGGGATGGTATAGAAGTAGTTTAGGTTGTATTGTGGGATTTATTTTTATTGTTTGTTTTG
++
+<B<<FFFFFFFFFIFBFFFFFIIBFFIIIIIIBFFFIFFI70BFFFFFFFFFIBFFBFFBFFFFBBBB<BFFF<B<BBBBBBFFFFFFFFF0<BF0BBFF0
+@HISEQ:105:C2UE1ACXX:3:1101:17628:10309 1:N:0:CAGATC
+TGTATGTTTAGATTTGTTTTGAATTTGCGTTTTTGGTTGTTGATTATTTTTTATTATTTTTTGTTTTTTCGTGTGTTCGGGAGATCGGAAGAGCACACGTC
++
+B<BFFBFFFFBFFIIBFFFI<BFFFI<F<FFFII<0BF<FF0BFFFIIIIIIIIIIIIIIIF7BFFFFFF7B7B<BBB7''707BF007B0<07<BBF0<B
+@HISEQ:105:C2UE1ACXX:3:1101:1440:10515 1:N:0:CAGATC
+AGAGTGTTTTTAGTGTGAGGAGTTGGATGTTTTAGATATTTATTTTTATATTGTTTATTTAGGTTATGATTTATGTTTTATTTTAGTTTAATTTTTTGTGT
++
+BBBFFFFFFFFFBFBFFFFIIIIFBBFFFFFFIF<BFFIIIFIIIIIFFFFIBFFIFIIIFBBFFFF<BFFIIIBFFFIIIIFFF7BFFFFFFFFFF7B<B
+@HISEQ:105:C2UE1ACXX:3:1101:11787:10735 1:N:0:CAGATC
+AGAATAGGGAAGTGTATAGAAGTGATATATAGTTTAGATTTGAGTTTTTATTTTGTTTTTTATATTTTTAGATATAAGTAGTTATTAGATTTTTTTGAATT
++
+B<BFFFBBBFFFFFIFFIBFIBFFIFIIIIIBFFIIBFFIIBFFFFFIIIIIIIBFFIIIIIIIIIIIII<FFIIIF<FF<BFFFFF0BFFFFFFF0<BFF
+@HISEQ:105:C2UE1ACXX:3:1101:10231:11124 1:N:0:CAGATC
+TTGTTTTAGTTATTTTTTGGTTTTTTAGATTTTATGTTTTTAGTTTTTATAATTTTTATATTGTATTTGTTTATTAAGTGTGAAATGTTTTTGTAGGATGT
++
+BB<FFFFFBFFFFIIIIIBBFFFFIIF<FFFIIFF<FFIIIFBFFFIIIIFFIIIIIIIIII<FFFFF<FFFFFFFF<B<B<BFFF<BBFFF0<B70<<7<
+@HISEQ:105:C2UE1ACXX:3:1101:12958:11220 1:N:0:CAGATC
+AATATAATTTAATAAGTAGTGTTTTTTTTTTTTTTTTTTTTTTAATAGTTTATTTTTTTTTAGGAAATTCAAAATTTAGTTTTTCTTTAATTTTATAATTA
++
+BBBFFFFFFFFFFIIFFFFIFIIFIIIIIIIIIIF'07<BFFB##########################################################
+@HISEQ:105:C2UE1ACXX:3:1101:9833:11396 1:N:0:CAGATC
+GTTTTTATTTTTGGGATTAAGGTAGTTGTTTTTTGATTTTTGTGTGTTATAGTAAGAATGATATAGGAGATCGGAAGAGCACACGTCTGAACTCCAGTCAC
++
+<BBFFFFFFFFFBBBFFFIIFFFFFFIBFFIIII<BFFIII7FBFBFFIII<FFFBFIIBFFIIF<7BBBFF<7B<0<7<BFFF7BBF7BBFFFFF<BBBB
+@HISEQ:105:C2UE1ACXX:3:1101:13437:11566 1:N:0:CAGATC
+TTATTATTGTGGATTTTTTTAATAGTTTGAGAATGAGTTGATTTAGGGTTTTTATTTTATTTTTAAAATTAGGAGTATAATGGGTTTAAGATATAGTTTTT
++
+BBBFFFFFBFFFFFFIIIIIIIIIBFFF<BBFFF<FBFFBFFFIFB7BFBFFIIIIIIIIIIIIIFIFFFF<7BBBBBFFF700<<BFF<BBFFF<<BFFF
+@HISEQ:105:C2UE1ACXX:3:1101:12514:13081 1:N:0:CAGATC
+TTAAAGTTTTGATTTTAAATTTAAGTTAAGGTTTGGGGAGTTGATTTTTGTTTTGTGGGTTGTTTTTTTTGTAGGAGTTGGTTTTTAGAGGTTTTTAGGAA
++
+BBBFFBFFFF<FFFIIFIIIIIFIBFIIIBBFFFB<BFFFIBBFFIIII7FFII7F<<BFFBFFFFFFFF0<B77<0B700<<BFFB'<00<BBFFB####
+@HISEQ:105:C2UE1ACXX:3:1101:18902:13084 1:N:0:CAGATC
+AGGAGTCGGGTTTTGTGAAATATTATAGTAGAGATAGGTGTTGGTTTTGGAATGGAGATTTTTAGTTTTTTTTTATTTTGATAGTTTTGGTAGATCGGAAG
++
+BBBFFFFFFFFFFIBFBFIIIFFIIIIBFFBFFFFFFFIFFB7BFFFIB7<FB<BFFIFFFIIIBFFFFFFFFFBBFFF0<BF0<BFF0'<B0<BB#####
+@HISEQ:105:C2UE1ACXX:3:1101:3574:13312 1:N:0:GAGATC
+ATAAGTTTAGTAGTTAGGTAATCAGGTTTTTGTTTTATAATTTGAGTTGGTTAGAATGGAATGGGTATTGTAATGTTTGTTGGAATTTTTTGGTTTTATTT
++
+BBBFFFFFFFFF<FFFB<FIFIBFB<BBFFI<BFFIIIFIIFI<B<BF0<FFF7BBF0'BBF<77BFFF7BBFFBB<B0BB''7BBFFFFB0'7BBBBBB#
+@HISEQ:105:C2UE1ACXX:3:1101:5163:13594 1:N:0:CAGATC
+TTGTGGGTTAGAAATGGGTTATTTAGAGGAATATATAGTTAATATGGTAATGGTTATTTTTAGTTTATTAGTTTAAGTATTTATTTTTTTTTTATAGATCG
++
+BB<FFFFFFFBFFIIBBFFFFFIIIBFBBFFFIIIIIBFFFIIIIB7BFIIBBFFFIIIIII<FFIFIIIBFFIIIBFFFFFFFFFFFFFFFFFFF0<BB#
+@HISEQ:105:C2UE1ACXX:3:1101:10809:14594 1:N:0:CAGATC
+GTATTAGAGAAGAGAAATAAGATAATAAAGTAATAGTTGTGATTAGGAGGTTTTTTATAAGTTGATGGTTTATGTTAAGTAAGTTTATTAAGAAGTATAGT
++
+<BBFFFBFBFFFFFFFIIIIBFFIIIIIIBFFFIIBFF0BBFFFIBBFFFFFFFIIIIIIBFB7BFBBFFFII<BBFF<BBF<BBFFFFFF7<B<BBFF77
+@HISEQ:105:C2UE1ACXX:3:1101:7778:14963 1:N:0:CAGATC
+AGTGGATGATAATAATTTAGGTGATTTATAGTGAGATAAGAGGTATATGAATTTTAGTATTTATTTGTTTTTTTATTTTGGGTTATTTGAGGGTGTTTTAT
++
+BBBFBFFBFFFFFIIIIIIBBBFFFIFFIIBFBFBFFFIBFFFFFFIIBFIIIIIIBFIIIIIIIIBFIIIIIIFFFFF707<<BFFF7<''077<BBBFF
+@HISEQ:105:C2UE1ACXX:3:1101:2575:15554 1:N:0:CAGATC
+TTTGGGTTGGTTTTTTTTTTTTTTAAAAAGGTTTTAGGGTTTTGGTTTTTTTTATAATTTTATTAAAATATTAAATATTTATAAAATTTTTATTTTAAAAA
++
+BBBBBBFFBBFFFIIIIIIIIIIB7'0'00'7<'00<B0<<BB7'7BBFFFFB'0<'<BFB'<<BB'00'0<'0'00<'000'0B0<BFF<'<BF<BFB00
+@HISEQ:105:C2UE1ACXX:3:1101:20234:16099 1:N:0:CATATC
+TAAGAGGAAAGAATGGAGAAGAAGATTGGTTTTAGGTATATGATGGAATAGGGTAAAAATGATAGTTGAGGTTAATGGTTTAATTTTTGGGAATTATAGGT
++
+BBBBFFFFFFFFFIBBFFFFFFIBFFFB<BBFFFBBFFFFIBFFBBFFFFBBBFFFIIII<BFIBFF<BBFFFFFB77BBFFFFFFFF000<BBFFFF77<
+@HISEQ:105:C2UE1ACXX:3:1101:20842:16102 1:N:0:CAGATC
+TTGGGATTGTTTTTGTTTGAATTATTTTTTTGTATTATATTTTAATGTGTTGTTTATTTTTAGAATATGGAATTTGTAGGAAATTTTTAAAATTTATTTTA
++
+<B<BBFFFFFFFFIBFFIBFFIIIIIIIIII7BFFIIIIIIIIIIIFFFFFBFFIIIIIIII<BFFFF<7BBFFF<BB00<BBBFFFFFFFFFFFFFFFFF
+@HISEQ:105:C2UE1ACXX:3:1101:21194:16434 1:N:0:CAAATC
+TATAGGTTTTTATTTATGTAGTTTTTTGTATTTGTTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
++
+BBBF<<BBFFFFFIIFI<BFBFFFIII7BFFBF0BFFFI7BFFFIIFIFFFFFBFBBFFFBBBFFFBFFFFFFFFFFFFFFBFFB<<7BBFFFFFFFFBBB
+@HISEQ:105:C2UE1ACXX:3:1101:7164:16848 1:N:0:CAGATC
+TTTTTGAGTTTGATAGGTTGTTTTTGTAGAGGGTAGAATTTTGTGGAAACGTTGGTATTGGTTAAGGGGTTTTAGTGAAGAATAAATTTTTATGTTGTATA
++
+BBBFFBBBFFFBFFIBBFIBFFFII<BFBFFFIIFBFFFFIIBFB0BFFIBFF<<FFFI77BFFI<<<FF<BBF<B<<B7BBFFFFFFFFFFF'<B7BBFF
+@HISEQ:105:C2UE1ACXX:3:1101:2125:17112 1:N:0:CAGATC
+AAGAGGAGGAGGTTGTAGTGGGGTAAGGAAGGAGAGTTTTTGTAAGTTTGGAAATTTGAAAATTATTGTTTTTTATGTTTAGATTTTTTTATGACATTTGA
++
+BBBFFFFFFFFFFIBFFBFFIIFBBFF<FFF7B770BBFFI'7BF7BBF<'<F<FFF'<BFBFB<BF7BBFBBB<B'<BBB'7<BBBBBBBB'00<BBF##
+@HISEQ:105:C2UE1ACXX:3:1101:6615:17184 1:N:0:CAGATC
+GAGAGAGTTATATGTAATAGTTAGTTTTATTTAGAATATTAGAAGAATTATATGAGTAAGGTGTTTAATTATAAGGATAAGTTATAAGTTATAAAAATACG
++
+BBBFFFFFFFFFFBFFIIIFIIIBFFIIIIIII<FFIIIIIBFFFFIIIIIIIBFBFFIFFFFFFIIIIIIIIIBBBFFF<BFFIII<BFFFFFFFFFFF#
+@HISEQ:105:C2UE1ACXX:3:1101:12454:17532 1:N:0:CAGATC
+TTGGTGTAGAGGTTTGTTAAGTGTGGTATGGTTGAGAATATTCGTGTTTTATTGGTTAAATGTGATTTTTGTATTAAGTTGAGAGTTAGGGGTTTTGTTTT
++
+<B<<BFFFBFFFFFF<FFFFBFFIFFIFFBBFF<BBFFFFIIIFFFFFFIFIIB7FFFFII<FBFFIIII<FFFFFF<BB7B7B<B<B7''7<<BF<BBFF
+@HISEQ:105:C2UE1ACXX:3:1101:2584:17964 1:N:0:CAGATC
+TAGAGGGTTTTGTAGAGTATTTGAGTATTTGTTATTATTGTTGTATTTATAGTATTAATTTTTTTAGGAGTAAAGTAATTTTATTAAGTTTTAATAGATTT
++
+<B<FFFFFFFFBFFBFFFFFFIBFBFFFIIBFFFFIIIIBFFBFIIIIIIIBFIIIIIIIIIIIII<7BBFFFFFFBFFFFFFFFFF<BBFFFFFF7<BFF
+@HISEQ:105:C2UE1ACXX:3:1101:9624:17911 1:N:0:CAGATC
+ATTTTGATGTTATTATTTATTTATAAAGTAAGAATAAGGTTATTGGTTTTGTTGTTTTTTAGAGTTGTAAGGAGGATTTTATATAGTAAAAGATGTAGAAT
++
+BBBFFBFFBFFFFIIIIIIIIIIIIIIFFFFFFIIII<BFFFFIBBFFFIBFIBFFIIIIFBFBFB<FFIBBB<<BBFFFFFFFF7<BFFF<BB7BB7BBB
+@HISEQ:105:C2UE1ACXX:3:1101:19795:18124 1:N:0:CAGATC
+TTTATATTAATTTTTGGGTATTATTTTAGTGTGTTTAAGATGATATTTTAAGAGAAATTTGAATTGAAGAGATTAGTTTTTTATAAATGGCGTATGAAGGA
++
+BBBFFFFFFFFFFII<<<FFFFIIIIII<FBFFFFFIIBFFBBFIIIIIIIBFBFFIIIIBFFFI<BFBFBFFFIFFIIIFFFFFFFF7'70<BB7<B707
+@HISEQ:105:C2UE1ACXX:3:1101:2293:18893 1:N:0:CAGATC
+TGGATGCATGAAAAGTGTATTTAATTGGTGAGTTATATTTTTTGTCTTTTGGTTTTCGTTTTTAGATATTTATTTATTAGTTTTTATTGTTTTTAGTTTGA
++
+<<<BFBFFFBFFFIBFBFFFIIFIIIB<BBFBFFFFFIIIIIIBFFIIII70BFFII7BFIIII7BFFFFFFFFFFFFF7BBFFFFFF<BBFFFF7BBF0<
+@HISEQ:105:C2UE1ACXX:3:1101:12741:20220 1:N:0:CAGATC
+ATTTTTTTGGAAGAGAAGGAATTTATTTAGGGGAAATATATGTGTTTATATAGGGGATTTTTGAGTTTGATAGGTTGTTTTTGTAGAGGGTAGAATTTTGT
++
+BBBFFFFFB<FFBFFFFFFFFIIIIIIIIBBFFFFFIIIIIBFFFFIIIIII<77BBBFFFF7BBFBF<BBF<<B<<BBFFF7BF7B<'0<<0<BFFFF0<
+@HISEQ:105:C2UE1ACXX:3:1101:18080:20193 1:N:0:CAGATC
+TTATATATTGTTGGATGTGTTGTTTAGGGTTTTGTTAGTGTTTTTTGAAGATAATGATTAATGATGTATGTAGATTTTTGTAGGTTTTAAGAAGTTGGTTG
++
+BBBFFFFFFBFF<BFFBFFIFBFFFFBBBFBFF<BFFBFFFFFIII7BFBFFIII<FFIIII7BFBFIF<FFBFFFFFF0BB07<<BBFF7<B########
+@HISEQ:105:C2UE1ACXX:3:1101:18680:20134 1:N:0:CAGATC
+TGTTTGGAAGTATGGTGTTTTTTAAGAGGTTTTTGGTTATTTAGTTTGAAATGATTTAGATTATTTTGTTTTTTTGGTTGGGGTAGGTTTTGGAAATTTTT
++
+B<BFFBBFFFFFFFFFFIFFIIIIIBFFFIBFFIB7BFFIIIIFFFI<BFIIBFFIIIBFFIIIIIIBFFFFFFF<7BB70077777BBBF7'<BBFFFFF
+@HISEQ:105:C2UE1ACXX:3:1101:19451:20037 1:N:0:CATATC
+GTTGGTATATTGAGTTTACGTTGCGTTTGTATTATGGAATTTTTTTTGGTGTAGTTTTTGAAGGTGTATTGAGGTTTGAATGAGAGAGGTATTTTTGTTAT
++
+0BB<BBFFBFF0BBFFIIIBFF<B0BFF0BFFFIIB<BFFFIIIIII<7B<BBBFFFFF7<B<BBBBBBF0<70<7<'<BB'<7<'707<<BBFFB07BBF
+@HISEQ:105:C2UE1ACXX:3:1101:14848:20360 1:N:0:CAGATC
+TCTTTATTAATATATAAAAAAAGATATTAGGGAGGATCGAGGGTGTTTTTGTTATGTTTGTTTTATAGAGGAGTATATAGATTGAGGTATAGATACAGGAT
++
+BBBFFFFFFFFFFIIIIIIIIIBFFIIIIBBBFFFFFFBFFFFIIIFFII<BFFFBFFFBFFFFFFF<B<<BBBBBFFF7<BF7<00<<BF0<BFFF007B
+@HISEQ:105:C2UE1ACXX:3:1101:20622:20397 1:N:0:CAAATC
+ATTGTTGTAGTAAAATTTTGAGTTTATAAGTTTTAAAGATTTTAGTAAATTGAGTTTTGTATAGTTTAATATGTATTAAGAATATTTTGGGGATTTTTTTT
++
+BBB<FF<BFBFFFFIIIII0B0BBFFFBFBFFFFFIIBFFFIIF7BFBFFI'00BBFFBBFFF'BFFBBFII0BBB<BB0BBFIIIIF7'''07BB<BBB#
+@HISEQ:105:C2UE1ACXX:3:1101:12295:20565 1:N:0:CAGATC
+ATAAGATAATAAAGTAATAGTTGTGATTAGGAGGTTTTTTATAAGTTGATGGTTTATGTTAAGTAAGTTTATTAAGAAGTATAGTATTATATATAGTATTT
++
+BBBFFFFFFFFFFFFIIIIFII<FBFFIFBBFFFIFFFIIFIIIFFF7BFBBFFFIIBFFIIFFFIFIFFIIIFI<<B7<BFF07<BFFFFFFFF77<BFF
+@HISEQ:105:C2UE1ACXX:3:1101:8987:20904 1:N:0:CAGATC
+TATCGATTTTTTCGGTTATGTGGATTTTTTTTTAGAGGTGATAGTTGTTTTGCGTGTTATCGATGGAGTTTTGGTGGTGGTGGATTGTGTGTTTGGCGTGT
++
+BBBF<BFFFFFFFB<BFFI0<B0BFFIIIIIIIB'<7<F'7BB<BB7BFFF'B0<7<BBFB7BB7'<BBBBB0'7<B<0'7<77BB0<000<<B#######
+@HISEQ:105:C2UE1ACXX:3:1101:11915:21129 1:N:0:CAGATC
+TTTGTTAGTTTTATATTTTTAAGTTTTTTTTTAGGTTCGTTTTAGAAATAGTATGTGTTAAATAGTGAAGTAATTTTTGGTTTTATAATGAGGAGTGGGTA
++
+BBBBFFFFFFFFFIIIIIIIIIFIIIIIIIIIIB7FFF<FFFII<FFIIIBFIFBFFFFFFFFF<BBBFBBFFFFFFF00<BBFFFFFF7<00<0<<<B<B
+@HISEQ:105:C2UE1ACXX:3:1101:12442:21376 1:N:0:CAGATC
+GTGTATATATTAATTATATTTTGATATGTTTGTATAGGACGGTTATTGGAATAAAATATAAAAAAGTAAGTAAGTAAATAAAAAAATATAAGGTGAAAGTT
++
+BBBFFFFFFFFFFIIIIIIIIIBFIII<FFI<FFII<BFFBBFFFII77FFFFIIIIIIIIIIIIBFFFBFFFBFBBFFFFFFFFFFFFFF7077<BB<BB
+@HISEQ:105:C2UE1ACXX:3:1101:10225:21919 1:N:0:CAGATC
+AGTGAAGAGGGAATGAAAAGTTTTTGATTTAATTTATATAATTAAAAAAGTTGGTAGTTATAGTAGTTTAATTTTTTATTATTAAGTTTGTGTGTGGTGTG
++
+BBBFFFFFFFFFFFBFFIIFIFFII<BFFFIFFIIFIIIIIIIIIIIIIFFB77BFBFFFII<FFBFFFIFIFFFFFFFFFFFFF7<BF7B<B<B<7<BB7
+@HISEQ:105:C2UE1ACXX:3:1101:12240:21986 1:N:0:CAGATC
+ATTGTTATTAATATAGGGGGTAGTTTTGGTTTGGGATTGAGGGAGGAATTATAGGAGAATTATTTTTTGTGTAGGAGGGAGAGTTTGAAATTAGGAAGATC
++
+BBBBFFFFFFFFFIIFBFFIIFFIFIIBBFFF77BFFF7B<BFFBFFFFIIFF<<B<BFFFFFFFFFF7BBBFB<<<<<<<BBBBB0BBFFFF00<B7<BB
+@HISEQ:105:C2UE1ACXX:3:1101:2199:22213 1:N:0:CAGATC
+TTAAAGTTATTATTGGAATTTTAAGTTAGGTTATATGTAGGTTATGTATAGGTTTTTATTGTGGGATGAATGGTATTTGGAGCTTGTTTAAAAGTTAGGTT
++
+BBBFFFFFFFFFFIBBFFIIIIFIBFFIBBFFFIFIFIIFFIFFIBFIIIFBFFFIIIIIBFBBFFFBFFF<<FFFFI70<7BFF<BFFFFFFBBBF77<B
+@HISEQ:105:C2UE1ACXX:3:1101:9023:22492 1:N:0:CAGATC
+GTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATAGATTGTTTGTTATTGATTTTTTTTGGTAGGACTTTTTATGTTATTTATAGTGAGGAAGAAAGATAT
++
+<BBBFBFFFFFFF<FFFFFFFBFBFFFBBBFFF'''0B0'BBF77B'''''0B0BBFF###########################################
+@HISEQ:105:C2UE1ACXX:3:1101:13060:22287 1:N:0:CAGATC
+TAGTGAAGAATAAATTTTTATGTTGTATATTATTTTTTTTTAGTTCGTATATATCGGTATACGTGTTAGGATTTATAAAGATAGTTATTATTTTTTGTTGT
++
+BBBFFFFFFFFFFIIIIIIIIBFIFFIIIIIIIIIIIIIIII<FFIBFFIIIIIIB<BFFFFBBBBBF<<BBFFFBFFF<BBF7<BFFFFFFFFFF7BB07
+@HISEQ:105:C2UE1ACXX:3:1101:16084:22385 1:N:0:CAGATC
+TATTGAGTTATTGTTTTAGTTTTATGGAAGATTTTTTAAATTGGATTGTTTGTGTTTTTATAGTTTTGAGAGTTTTGTTTGATTTTGTTTTTTTTGTGTTG
++
+BBBF<<BFFFFF0BFFIF<IIIIFFB<FF<FFFFIIIFFFF'0<BFFBFFFBF7FBFIIFIF7BFFI7<7B<BBFB'<BF'7BBFF7BBBBBBB#######
+@HISEQ:105:C2UE1ACXX:3:1101:7272:22581 1:N:0:CAGATC
+TTAATGATATTAAGAATTTTTTAAAGAATTTTATTTTTTTTAGGAATAGAAGGAGGAGGAGTATTTTGATCGATTTTTTAGGTTTTTTATAGGTGGAGTTA
++
+BBBFFBFFFFFFF<BFIIIIIIFIIBFFFFIIFIIIIIIIII<<FFFIBFIBBFFBFFFFFFBBFFF<BBF<BBFFFFFF00<BBFFFFFF000<777B<B
+@HISEQ:105:C2UE1ACXX:3:1101:10060:23020 1:N:0:CAGATC
+TTTTAGATTATTTAAGAAGGTATTAGGTTTTTAAGAGGAAAGGGTAGTCTTATAGTTTTGAGTATTTTTTTTAAAAGGAAGTAAGGATGGTGTTTTTATTT
++
+BBBFFBFFFFFFFIIBFIFFFFFIBBBFFFFIIIBFFFIFIBFFIFFFFIIFFFBFFII7B<FFFIIIIIFFFFBB77<B<BBF<7BB<<BBBBBFFFFFF
+@HISEQ:105:C2UE1ACXX:3:1101:14440:23104 1:N:0:CAGATC
+TTTAAATTTAAGTTAAGGTTTGGGGAGTTGATTTTTGTTTTGTGGGTTGTTTTTTTTGTAGGAGTTGGTTTTTAGAGGTTTTTAGGAATTTTTGGTGTTTT
++
+BBBFFFFFFFFFFFIIBBIFIBBBFFFFFBFFIIIIBFFIIBFBFFFFFFIIIIFFF7BB<<BBFB<BBBBFFB7<00B<BBFF00<BBFFFF''77BBBF
+@HISEQ:105:C2UE1ACXX:3:1101:6941:23338 1:N:0:CAGATC
+AGAAAGGTTTTAAGTTGGTTGGGAATATAGGGGTTTTTTAGAGTTTTTATTAGGAGTTATAGTGTGTTGAATTTGGTTTTGGGTGTTGATTATAGGTTGTT
++
+BBBFFFFFFFFFFBFFBBFFBBBFFFFIIBFFFIFFIIIIBFFFFFIIIIIIB<FFFFFFFBFBFFFF<BBFFF<<BBBB700<BBB0BBFFFF00<B7<B
+@HISEQ:105:C2UE1ACXX:3:1101:10069:23622 1:N:0:CAGATC
+TTTTGTTTTAGGGTTTTATTTTTGTGTTTTATTTTTATTTTCGTATTATTAGTTTTTTTTATACGTTATTTGTAGAAGGTTAGTTTTTTTAATTTAGGTTT
++
+BBBFBFFFFFBBBFFFIFIIIIIBFBFFIIBFIIIIIIIIIIBFFFIIIIIFFIIIIIIFFFFF<BFFFFF<BF<<B77BBB7BBFFFFFFFFFFF00<BB
+@HISEQ:105:C2UE1ACXX:3:1101:14079:24078 1:N:0:CAGATC
+TTTAAAGTTTTTAGTTTTGAGTGGAATTTTAAGAATATTAGTGCGTTTTAAGCTTAGGTAGTTTTGGTAGTTTGAAAGTAATAGGGTGTATTTTGTAAAGT
++
+BBBFFFFFFFFFFBFFFI<BBFFFFFFIIIIIBFFFIIIIBFFFFFFIIIIBFFIIBBFFFFFFI<7BFBFFF<BBF<BBFFF<07BBBBBFFF<BFFF<B
+@HISEQ:105:C2UE1ACXX:3:1101:12064:24631 1:N:0:CCGATC
+TTATAGTGTATTTATATATATGAAATGAATTAATGAATTTTAAAAAAAAAGAAAGTAAGTTGTTTTTAGGATTGATATTTAGAGTTAATTTTTTGAGTTTT
++
+BBBFFBFFFFFFFIIIIIIIIBFIFF0BFIIIIIBFFIIIIIIIIIIIIIBFIIFFFIBFFBFFFFFFB<BFF7BBFFFFF<B<BBBFFFFFFF'70<<BF
+@HISEQ:105:C2UE1ACXX:3:1101:6662:24968 1:N:0:CAGATC
+AGGTGTCGTTTAATTGTTTAGGTTTATGGTATTGTGTTTCGTTTTTTTGGTATTTGTGAGGGTAGAATTGTTTTTGGGTTTTAATTTTTTTAAGTATGGGA
++
+BBBFFFFFFFFFFIIBFFIFBBFFFFIB<FFFI<FBFFFFBFFIIIII77BFFIIBFBFBBBFBBFFFF<BBFFF'07BBBBFFFFFFFFFFB0<BF####
+@HISEQ:105:C2UE1ACXX:3:1101:11630:24964 1:N:0:TAGATC
+TTAGTTTTTTTAGTGTTTTTTATTTATTTCGTTTTATTATTGGAGTTTGTTAAGAAAATTAGGGTTTGATTTGGATGTTAAGGATTGGTTTTTTTTTTGAT
++
+BBBBFFFFFFFFBFFFFIIIIIIIIIIIIIBFFFIFIIIIIB7BFFFFBFFIIBFIIIIIFB<BFBFBFFFF<7BB<BBFF<7<BB77BBFFFFFFFF0<B
+@HISEQ:105:C2UE1ACXX:3:1101:12594:24878 1:N:0:CCGATC
+TTTAATAGGATATGATATTATTTAATTTATAGATTATGGAAATTTTTTATATTTAATGAAGAAAGTTGGAATGTTTTGGGAGGTGTTTAGAATAAATAAAT
++
+BBBFFFFB0BFFF<FFIIIFIIFIIIFIFIF<BFFFF<<BFFFIIIIIIIIIIIIIIBFFBFFIBFB7'<FF<<BBF0''77<BFB<BB0<BBBBBFFBBF
+@HISEQ:105:C2UE1ACXX:3:1101:4483:25030 1:N:0:CAGATC
+AGGATGGTGTTTTTATTTTTAGATTTATATTATTTTGTTATATTTGTATTTGAGTAAGTTTATGGGTTTTTTAAAGAGGTAGGAGGAAGTTTTTTGTTATT
++
+B<BFFFFFFFFFFIIIIIIIIBBFIIFIIIIFIIII<BFFIFFIIBFIIII<BBFFIFIFIIIB7<FFFIIIFBF<<77BB00<70<B7BBBFFF0BBFFF
+@HISEQ:105:C2UE1ACXX:3:1101:12198:25235 1:N:0:CAGATC
+ATATATGTAGTTTGTATTATTTTTGTTATAGTATATAAAGGTTAAAGAGTAGTTGTTTTAATTTTAGAGGTGGAGATTGGGTTGTATAGTTTTGGTTTTTA
++
+BBBFFFBFFFFFFBFFIIFIIIII0BF<FF0BFFFIFFIBBFBFII<FBFBBFF7FFFIIIIIIII<F7<B'<BB7<B''0<<0<BBB77<BB'0<<BBFB
+@HISEQ:105:C2UE1ACXX:3:1101:20477:25084 1:N:0:CATATC
+AGAGTTTATTGAGAAGTAAAGTATTAATTTTATGGGAGAAATGGGATAGAGGTAGTAGAAGTTGTTATGGAATGGGATTAATTAGGAAGTTAATTAAGTGT
++
+BBBFFFFFFF0BBFFBFFIIFFIIIIIIIIIFIBB7FFFFIIFFBFFIFIBFFFFIIFIIFFFBFFFF77BFF<<B<FFFFFFF70<B7BBFFFFFF7B<B
+@HISEQ:105:C2UE1ACXX:3:1101:5725:25359 1:N:0:CAGATC
+GAGAAATAAGATAATAAAGTAATAGTTGTGATTAGGAGGTTTTTTATAAGTTGATGGTTTATGTTAAGTAAGTTTATTAAGAAGTATAGTATTATATATAG
++
+BBBFFFFFFBFFFIIIIIIIIIIIBIFBFFFFIIBBFFFFFFFIIIIIIFFFBFFBBFFFIIBFFIIBFIIFIFIFFFFF<BF<BBFF7<<FFFFFFFFF0
+@HISEQ:105:C2UE1ACXX:3:1101:5502:25591 1:N:0:CAGATC
+ATATGATTTTATTTTTAGGGATAATATTTTTTAAGTGAATTTTGATTTTTTGGTTAGTTATTTTGATGATGTGTAGAGGGTGTATAGTTTTTGGATATAGA
++
+BBBFBFFFFFFFFIIIIBBBFFFIIIIIIIIIIIBFFFIIIIIBFFIIIII<7BFFBFFFIIII<FF<FFBFFFFFB<<<BFBBBF<<BFFF00<BFBF7<
diff -r 000000000000 -r 8db56d2f8b72 test-data/t_R1.fastq.gz
Binary file test-data/t_R1.fastq.gz has changed
diff -r 000000000000 -r 8db56d2f8b72 test-data/t_R2.fastq
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/t_R2.fastq	Thu Jun 21 15:20:14 2018 -0400
@@ -0,0 +1,400 @@
+@HISEQ:105:C2UE1ACXX:3:1101:11160:2245 2:N:0:CAGATC
+CATAAAAACCAAAACTAACTAAACCCCAAATAAAAAACAACCTAACCTCTAACAAAAACAACAACAACTAACACCTCAAAATCAACTCTAAATAAAAACTA
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFIIIIIIFFFFFFFFFFFFBFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
+@HISEQ:105:C2UE1ACXX:3:1101:19338:2197 2:N:0:CAGATC
+CTAATTTCTATTACCTACCTAACAACTATAACTATAATACTAACAAAAAACAAACAACATAGACCTAAATCCTACTTATACCCAACATTCTAAAAACAATT
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII0<BFFIIIFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFB
+@HISEQ:105:C2UE1ACXX:3:1101:19467:2281 2:N:0:CATATC
+ACACAACAAAATCCCTACTCCTATAACCTCTCACTACACCCAAAACTCCATTCTTTTCCCCCTTTACAAAAATCACTAAAATCCAAACTATACATCTCACC
++
+BBBFFFFFFFFFFIIIIIIIIIIIIFIIIIIIIIIIIIIIIIIIIIIIIIIFIIIIIIIIIIFFIIIIFFFFBBFFFFFFFBBFFFFFBBBFFFBFFFFBF
+@HISEQ:105:C2UE1ACXX:3:1101:7009:2740 2:N:0:CAGATC
+TAAATAAAACCCAAACCCACACTATCTATCCCTTATTAACATTACAATCACAATTATCAAATAAATAACAAAACCCAAAAAAACCTTACTTAACATTCCAT
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFIIIFIIIIIIFFFFFFFFFFFFFFFFFFFFFFFFFFFFB
+@HISEQ:105:C2UE1ACXX:3:1101:13708:2613 2:N:0:CAGATC
+TTCAAAAACTCCATAACAAACACAAATAAAAAATAAAAAACTCCTAAATCTCACCTTAAAAACTTATCTAACTGCAACTATTATCTTACTTAAAAAAAAAC
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFFFFFFFFFFFBFFFFFFFFFFFFFFFFFFFFFFFFFFF
+@HISEQ:105:C2UE1ACXX:3:1101:19067:2707 2:N:0:CAGATC
+ATCACTCTTCCAAAAATCACTCGAATCCACAAATACAAAAACTTTCTAACCACACACCTAAAAAAAAAAAAAAAAAAAAAAAAACCCCCCCTTTAAAACCT
++
+BBBFFFFFFFFFFIIIIIIIIIIFFIIIIIIIIIIIIIIIFIIIIIIIIIFIIIIIIIFIIIIIFFFFFFFFFFFFFFFBB####################
+@HISEQ:105:C2UE1ACXX:3:1101:4999:3182 2:N:0:CAGATC
+CTTATAATTCAAATTTCTAAACTCCTACTCCCTCTCCCTTTATATTTATTTAACACATACTATTCTAACTATATATAAATCATAAATCTTATAAACTTTAA
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFFFFFFFFFFFFFFFF
+@HISEQ:105:C2UE1ACXX:3:1101:16790:3145 2:N:0:CAGATC
+AACATACCTATAAAAACGCACTACTTTTATATACAAAATCCGTCTCTACTAATACCATAACCAACCTCTATACCACATATAAAAAACAACAAACAATACTC
++
+BBBFFFFFFFFBFIIIIF<FFFFFIIIIIFFFIIIIIFIFFFIIIIIIFIFFFFIIIIIIIIIIIIFBBBBFFFFFFBBFFFFFFFFFFBBFFFFFFFFBB
+@HISEQ:105:C2UE1ACXX:3:1101:18065:3106 2:N:0:CAGATC
+AAAAACTAAACCCAAAAAAAAAACAATAAAAATAAAATAATAAAAATTATCATAATAAATTCCTAAAAAAAAAAAAAACTTTAAAAAAAAAAAAAAAAAAA
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIFIIIIIBFIIIFFFFFIIIFFFFFFFBFFFFFFFFFFBFFFFFFFFFFFFFF'0<<<BFB###############
+@HISEQ:105:C2UE1ACXX:3:1101:2300:3263 2:N:0:TAGATC
+AAAAATACAAAAAATAAAAAAAAAAAAAAACATTAAATTTAAAAAAAATTTATTTTTTATTTTATTTTATTTTTATTTTTTTAAATTAAAATAAAAAAAAA
++
+BBBFFFFBFFFFFIFFIIIIIIIIIIIFF<'<<<BBBFF0<FFBBBBFB7'0<BB000<'<F<0BBFB'<<BBB0<B<B<B7B<<0'<B'00BBFFFFFFF
+@HISEQ:105:C2UE1ACXX:3:1101:5605:3427 2:N:0:CAGATC
+AACCTCTACACAAAAAAATCTAAAAATCTAAAACAAATCCTATAACCGAACCACTTCTTATCTATAAATCTTACTAAAACTCCCCACATCCTATACCTCTC
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFFIFIIFFFFFFFFFFFFFFFFFFFFFFFFFFBBFFFFFFFFFFFFFFFFFFFF
+@HISEQ:105:C2UE1ACXX:3:1101:8129:3589 2:N:0:CAGATC
+TCTTATCTCTTCAAATTCCCTAATATCAATAAACCCTAACATAACCCGATAAATCAAAAAACTCTTTTATCACAATAAACGTATAATCCTAACTAAAAACT
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFFIIIIIIIIIFFFFFFFFFFFFFFFFFFFFBBBFFFFFFFFFFFFFFFF<
+@HISEQ:105:C2UE1ACXX:3:1101:14304:3866 2:N:0:CAGATC
+AATTTATTCTTCACTAAAACCCCTTAACCAATACCAACATTTCCACAAAATTCTACCCTCTACAAAAACAACCTATCAAACTCAAAAATCCCCTATATAAA
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFFFFFFFFFFFFFFFFFFBBBFFBFFFFFFF
+@HISEQ:105:C2UE1ACXX:3:1101:12720:4398 2:N:0:CAGATC
+CTAATTTAACCTTTAAACTCAACAAAAATTAACCTACCTCTACCACTAAAATACTAAAATTAAACATATATATCACCAAACCCAACTTCAATTAAATACAC
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIFIIIIIIIIIIIIIIIIFIIIIIIIIIIIIIIIIIIIIIIIIIIIFFFFFFFFFFFFFFFBFFFFFFB
+@HISEQ:105:C2UE1ACXX:3:1101:14945:4439 2:N:0:CAGATC
+ACTCTCTCCTATATTCTTTACCAACATATATAACTTAACTCTCTAATAACCTTAACTATTCCTCACCCTAACCTCCACAAATACTATATATAATACTATAC
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIBFIIIIIFIIFFFFFFFFFFFFFFFFFFFFFFF
+@HISEQ:105:C2UE1ACXX:3:1101:8616:4508 2:N:0:CAGATC
+CTAATAAAAACCCTAAAAAATAAATCCTATCCTAATTCATTACCCACCATACCTTACAATACTAAAAATAACTACCCTACCTATTAAACCTCAAAAAAAAC
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFIIBFIIIIIIIIIIIIIFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
+@HISEQ:105:C2UE1ACXX:3:1101:18975:4834 2:N:0:CAGATC
+CTACAAAAATCCCCCTACCTCAACCTCCCACAAATAACTATTACCAATAATTACTTTTAAATCTTTAAATTACAAAATTACCATTTATAAGATCGGAAGAG
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFFFFFFFFFFFFFFFFFFFFFFFFFBFFFF
+@HISEQ:105:C2UE1ACXX:3:1101:4984:5374 2:N:0:CAGATC
+AAAACACTTTTCATAAACGACCCACTCTAAAAACAAACACCTCAACTAATACTTATTATCATTTTCCAAACTAATACTCAAAACCATTAACTAACAAATAA
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFIIIIIIIIIIIIIIIFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
+@HISEQ:105:C2UE1ACXX:3:1101:14432:5660 2:N:0:CAGATC
+TTACAAAAAAAAATTTTTTAATTAAATAAAAATAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATCCTTTTTTTTTTTTTTTTC
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFFFFFFFFFFFFFFFFFFFFFFB<BBBFFB777<B######################
+@HISEQ:105:C2UE1ACXX:3:1101:17410:5545 2:N:0:CAGATC
+ATATCCAAACCTCTAATAAAATAAAACCTAAATAAAACTAACATCTAAAATAATTAAATATACTCAAATTTCACTAAATAACCCTAACAACTTCAAAAAAA
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFIIFIIIIIIIIIIIIFFFFFFFFFFBFFFFFFFFF
+@HISEQ:105:C2UE1ACXX:3:1101:12336:6058 2:N:0:CAGATC
+TAAAAAAAATCACTCTTCCAAAAATCACTCAAATCCACAAATACAAAAACTTTCTAACCACACACCTAAAAAAAAAAAAAAAAAAAAAAAACACACACCCT
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFB##########
+@HISEQ:105:C2UE1ACXX:3:1101:5999:6265 2:N:0:CAGATC
+ATAAAACATTATATATAAAAACAACCCAATATCCAAAAACCCTATCAACCACAAAAACTAATAAACAAAAAATAAATTCAAAAAAAACACAAATATATAAC
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFFFFFFFFFFFFFFFFFFFFFFFFFFFBFFFFFFF
+@HISEQ:105:C2UE1ACXX:3:1101:5836:6568 2:N:0:CAGATC
+AAAACTACCTATAAAAAAAACATACCAACAACCTTTCAAATACAAAACTCCGTAAAATCTATACTATCTAACAATACCCTAAATCAAAAAAAAAACCAATC
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFBBFBB
+@HISEQ:105:C2UE1ACXX:3:1101:15437:6678 2:N:0:CAGATC
+CACCATAAACATACTCTACATCTCTACCTCCACTATTCAATTTTCAAAAACAAAAACTACCAACATTTAAAACTCAAATATCATAAAAAAATCTAAACATA
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFIIIIIIIIIIIIIIIIIIIFIIIIFFFFFFFFFFFFFFFFFFFFFFFFFF
+@HISEQ:105:C2UE1ACXX:3:1101:12432:6996 2:N:0:CAGATC
+TAAAAAATAAAACTATATAAAATATACAAAATAAAATAAAAAAAAAACAACCTTTAAAAATAACACTTATCTAAAATTACAACTTCAAATATTACTAAAAT
++
+BBBFFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFFFFFFFFFFBFFBFFFFFBFFFBBFFFFFFFFFFFFFFFFFBFFFFFFFFFF<
+@HISEQ:105:C2UE1ACXX:3:1101:19878:7022 2:N:0:CATATC
+TACAAACGCAACGTAAACTCAATATACCAAAAAACCCTACGCCCAACCACACCCCTAAATCGAACATAAATCTACACAAACTAATAAACAAAACACAAACT
++
+BBBFFFF'BFFB'<BFIIFFIIIIIFFFIIIIIIIIIIII07BFIIIIFFFFFFBBBBBBB'7B7B<BBBFBBBB00<BBBBBBBBBBB00BB7BB'0BB0
+@HISEQ:105:C2UE1ACXX:3:1101:6837:7574 2:N:0:CAGATC
+AAATCTTTTCATTCAATATAACATTTTAACAAAACTATATTATTACACCCATAAAAACCAAAACTAACTAAACCCCAAATAAAAAACAACCTAACCTCTAA
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFFFFFFFFFFFFFFFFFFFFFFFFFF
+@HISEQ:105:C2UE1ACXX:3:1101:15853:7717 2:N:0:CAGATC
+CTCAAAAAAATAAAAAAAAAATCCTTAACAAAAAACAATATACTAAACACTAACACCCACAACTACGATTAATTCTACCTTCACCCACCTTAAACACTTAT
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIFFFFFFFFFFFFFFFFFFFFF<BFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFB
+@HISEQ:105:C2UE1ACXX:3:1101:2440:7931 2:N:0:CAGATC
+TATAAATCTTACTAAAACTCCCCACATCCTATACCTCTCATCTCCATACCTTTCTAATATCTATAACACTTTTCAAATAGATCGGAAGAGCGTCGTGTAGG
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIBFFFIFFFFFFFFFFFFFBBBBB<BBF
+@HISEQ:105:C2UE1ACXX:3:1101:6407:7896 2:N:0:CAGATC
+CTCCTAACTATAACCCTCTAATAACTCCCAATACATATCCTCAACCCAAACCTATAAAAGATCGGAAGAGCGTCGTTAGGGAAAGAGTGTAGATCTCGGTG
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIBFFIFFIIBFBBBFBFBBFFF<BFFBF<00770<BBFFB007
+@HISEQ:105:C2UE1ACXX:3:1101:19497:7952 2:N:0:CAGATC
+TCCACTTAACCATAAACCTCATAAACCTCTAAATACATTTATTTAAACTTTTAAACATCTACGTATATATCGGAAGAGCGTCATGTATGGAAAAAATGTAA
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII'7FFI'7BF0'0B##########################
+@HISEQ:105:C2UE1ACXX:3:1101:3853:8232 2:N:0:CAGATC
+CTACCGACAAACTAAATAAACAACAACTCAAAAACAACTCCTAAAAACCTCTAAATACAACAACAACCTAACCAGATCGGAAGAGCGTCGTGTAGGGAAAG
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFFFFFFFFFFFFFBFFFBBFFFFFFFBFFBBBBF<<7BB#
+@HISEQ:105:C2UE1ACXX:3:1101:7442:8079 2:N:0:CAGATC
+CAAAATATATCAATCAAAAAAACATCCAAAACCGAAACTCCAAACAACAAAAAAATAATAAAATACTACCCATAAAACCTAACCCTCAATATACCCCGACA
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFIFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFBFFBFFF
+@HISEQ:105:C2UE1ACXX:3:1101:14324:8171 2:N:0:CAGATC
+AATAACCCTAAATTCCTCTTCCTCCCTCACCATAACTAACATAACACGTCCTACCAAAAACAATCCCCAACAAACTATCACTCACACACACACACACACAC
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFIIIFFFFIIIIIIIIIIIIIIIFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
+@HISEQ:105:C2UE1ACXX:3:1101:3147:8365 2:N:0:CAGATC
+AATCTTTAAAAAAAACTTTCAAAACAAAATATAAAATTTCAAACTAAAAACAATAAAAACTAATAAATAAATATCTAAAAACGAAAACCAAAGAACAAAAA
++
+BBBFFFFFFFFFFIIIIIIIIIIIIFIIIIIFIIIFIIFFIIIIIIIIIIIIIIIIIIIFFBBBBFFFFFFFFFFFFFFFFFBBFFFFFFFFBFFFFFFFF
+@HISEQ:105:C2UE1ACXX:3:1101:7150:8384 2:N:0:CAGATC
+TCTAAAATAAAAATACCACTCACTCTATCCTAAATCCTTAAATACTTTCCTTCCAAATACTAAAAACCCTCCTAAACAATCCACTATAATAATAAACAATA
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFFFFFFFFFFFFFFFFFFFFFFFFF
+@HISEQ:105:C2UE1ACXX:3:1101:11512:8610 2:N:0:CAGATC
+AACCTTACGCACGCCCTACTCGCACTTCCACGCATAAACCAAAACCTTATAAATAAACAACATCTCCTACACTTCTACAAAAAAAAACGAAAACCCCGACC
++
+BBBFFFFFFFF<BBFFIFIIIFFFIIIIIIIIIFFIIIIIIIIIFFFFFFFFFFFFFBFFFFBBBFFFFFFFFFFFFFFFFFFFFFF<<BFFF77B<BBB7
+@HISEQ:105:C2UE1ACXX:3:1101:18380:8734 2:N:0:CAGATC
+ATAAAAAAAAAAAAAAAATTTTTTAAATAAAAAAAAATAAACAAAAACAACTAAACAACAACACAAATCCAAACATCCAAACTAATACCTAACTCTATAAA
++
+BBBFFFFFFFFFFIIIIBFFFFFBFFBBFFFFFFFFB0BBB0BBFFF7<BB'7BB0BB0B<770BBB0<<BFB<B'<0BBBB0BB0<BB<B<BBB<B<BBF
+@HISEQ:105:C2UE1ACXX:3:1101:18629:8512 2:N:0:CAGATC
+CCCCCAATAAAAAATAAACCCAAACCTAAACAAACAAAAAAACTCAAAAAATTAACTCTAAATATCAATCCTAAAAACAACTTACTTTCTTTTTTTTTAAA
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFFFFFIIFF<FFFB<B<BBF<BBBBFBBBBBFFFFBBBBBBBFBFFFFFFFFFFFFBBF
+@HISEQ:105:C2UE1ACXX:3:1101:5146:8981 2:N:0:CAGATC
+ATCAATACAACTCATACTAAACTCACCCCAAACCTTCTAAAAACAACAAAATCAACAAAAAAATTATAACTACACTAATACAAAACAAACAACAACAACTA
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFIIIIIIIIIIFFFFFFFFFFFFFFFFFFFFFFFFFFFFFBFFFFFFFFFF
+@HISEQ:105:C2UE1ACXX:3:1101:3344:9104 2:N:0:CAGATC
+CCAAAATAAAAAAACAAATAAATACTAAAATTCATATACCTCTTATCTCACTATAAATCACCTAAATTATTATCGTCCGCTTACAACTATACTCTCTCCTA
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFIIFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
+@HISEQ:105:C2UE1ACXX:3:1101:8326:9445 2:N:0:CAGATC
+CTAAAATAATATCATCCTCCAACATCAAACCTACCAAAAACATAACTTCATTTTCAAAAACAATACCTTCCAAATAAACTTTAATTTCCTAACCAATCACT
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFFFFFFFFFFFFFFFFFFFFFFFFFFFF
+@HISEQ:105:C2UE1ACXX:3:1101:2097:9536 2:N:0:CAGATC
+ATAACAAAAAATAATTTAAAAACAATAACAACAAAAACTCCCACCCCATCCCTATCCCAAAATTCCCAAAAAACCAAACTTAAATAAAATCCCATTAACTA
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFIIIIIIIIFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFBFFFFFFFFFF
+@HISEQ:105:C2UE1ACXX:3:1101:16351:9944 2:N:0:CAGATC
+TATCAATTCATAATCACTCAAAATAAAAAATAACTAATTTAACAACCAACAAACTTAATCCCAACACAACCAAAACAAACAATAAAAATAAATCCCACAAT
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFIIIIIIIIIIIIIIIIFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFB
+@HISEQ:105:C2UE1ACXX:3:1101:17628:10309 2:N:0:CAGATC
+CCCGAACACACGAAAAAACAAAAAATAATAAAAAATAATCAACAACCAAAAACGCAAATTCAAAACAAATCTAAACATACAAGATCGGAAGAGCGTCGTGT
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFFFFFFFFFFFFFFBFFFFFFFFFFBFFFFFFFFFFFFFFFFFFFFFFFFFBBBBF<
+@HISEQ:105:C2UE1ACXX:3:1101:1440:10515 2:N:0:CAGATC
+ATATTATTAATCATAATATTTATCACAAAAATAAAAACCTACCTAACTCACCAAACACAAAAAATTAAACTAAAATAAAACATAAATCATAACCTAAATAA
++
+BBBFFFFFFFFFFIIIIIFIIIIIIIIIIIIIIIIIFIIIIIIIIIIIIIFIIIIIIIIIIIIIIIIFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
+@HISEQ:105:C2UE1ACXX:3:1101:11787:10735 2:N:0:CAGATC
+ACTAACTAACACACTTACTAAATACCAAACACAATACCCCATAAAAAAAATATTCTACTTAAAAATTCAAAAAAATCTAATAACTACTTATATCTAAAAAT
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFB
+@HISEQ:105:C2UE1ACXX:3:1101:10231:11124 2:N:0:CAGATC
+CTCTCTAACCCAAAAATCCTTATATCCATCTACAAACCTCCTACACCCTCTAATAACACAAAATAATACTATCTCCTAACATCCTACAAAAACATTTCACA
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFIIIIIIIIIIIIIIIIIIIFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
+@HISEQ:105:C2UE1ACXX:3:1101:12958:11220 2:N:0:CAGATC
+TTTAATTATAAACTTAACGAAAACCTAAATTTCGAATTACCTAAATCAAACTAACCTATTAAAAAACGAAAAAAAAAAAAAAAACAATTAATAAAATTAAT
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFIIIIIIIIIIIIIIFFFFFFFFFFFFFFF####################
+@HISEQ:105:C2UE1ACXX:3:1101:9833:11396 2:N:0:CAGATC
+CCTATATCATTCTTACTATAACACACAAAAATCAAAAAACAACTACCTTAATCCCAAAAATAAAAACAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTA
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFFFFFFFFFFFFFFFBBFBFBBBFFBFFBBB####
+@HISEQ:105:C2UE1ACXX:3:1101:13437:11566 2:N:0:CAGATC
+AAACTCCTAAAATAACCTAAACCAACAAACTATTCTCAATAACAAAATCTAAAAAAAAACCAAAAAATAAAAAAATAAAAAAAACAAAAAAACAAAAATCA
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFFFFFFBFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
+@HISEQ:105:C2UE1ACXX:3:1101:12514:13081 2:N:0:CAGATC
+AAAAATTCCTAAAAACCTCTAAAAACCAACTCCTACAAAAAAAACAACCCACAAAACAAAAATCAACTCCCCAAACCTTAACTTAAATTTAAAATCAAAAC
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF<
+@HISEQ:105:C2UE1ACXX:3:1101:18902:13084 2:N:0:CAGATC
+ACCAAAACTATCAAAATAAAAAAAAACTAAAAATCTCCATTCCAAAACCAACACCTATCTCTACTATAATATTTCACAAAACCCGACTCCTAGATCGGAAG
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFBFFFFFFFFFFFFFFFFFB
+@HISEQ:105:C2UE1ACXX:3:1101:3574:13312 2:N:0:GAGATC
+TACCTCTCTCTCCAATAAAACCAAAAAATTCCAACAAACATTACAATACCCATTCCATTCTAACCAACTCAAATTATAAAACAAAAACCTGATTACCTAAC
++
+BBBFFFFFFFFFFIIIIIIIFFFIIIIIIIIIFIFFFIBFFFIFFIFIIFFFBFFFIIFFFBFFIFFIFFFFFB<BBFFFFFFFFFF<<<7BBBFBBBBF<
+@HISEQ:105:C2UE1ACXX:3:1101:5163:13594 2:N:0:CAGATC
+ATAAAAAAAAAATAAATACTTAAACTAATAAACTAAAAATAACCATTACCATATTAACTATATATTCCTCTAAATAACCCATTTCTAACCCACAAAGATCG
++
+BBBFFFFFFFFFFIIIFIIIIIIIIIIIIIIIIIIIIIIFIIIIIIIIIIFFFFFFFFFFFFFFFFFFFFFBFFBFFFFFFFFFFFFFFFFFFFFFBBBFB
+@HISEQ:105:C2UE1ACXX:3:1101:10809:14594 2:N:0:CAGATC
+ATATAATACTATACTTCTTAATAAACTTACTTAACATAAACCATCAACTTATAAAAAACCTCCTAATCACAACTATTACTTTATTATCTTATTTCTCTTCT
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFIIIIIIIIIFFFFFFFFFFFFFFFFFFFFFFFFFFFF
+@HISEQ:105:C2UE1ACXX:3:1101:7778:14963 2:N:0:CAGATC
+AAAATCCTCATAAAACACCCTCAAATAACCCAAAATAAAAAAACAAATAAATACTAAAATTCATATACCTCTTATCTCACTATAAATCACCTAAATTATTA
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFIIIIIIIIIFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
+@HISEQ:105:C2UE1ACXX:3:1101:2575:15554 2:N:0:CAGATC
+TTAAAATAAAAATTTCATACATATTCAATATCTTAATAAAATTATAAAAAAAACCAAAACCCTATAACCTCTCTAAAAAAAAAAAAAACCAACCCAAAAAA
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFFFFFFFFFFFFFFFFFFFFFFFFFB7'77<B'7BBB##
+@HISEQ:105:C2UE1ACXX:3:1101:20234:16099 2:N:0:CATATC
+ACTTTTAACCAAACACTAAATCTCCCACACTACCCAAATATAATACCACATACCTATAATTCCCAAAAATTAAACCATTAACCTCAACTATCATTTTTACC
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
+@HISEQ:105:C2UE1ACXX:3:1101:20842:16102 2:N:0:CAGATC
+CATCTAATTTAAAATAACCCAAACTACCTCGTTTCCTTAACTAAAATAAATTTTAAAAATTTCCTACAAATTCCATATTCTAAAAATAAACAACACATTAA
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIII<FFIIIIIIIIIIIIIIIIIIIIIIIIIIFFIFIIIIIIIFFFFIIIFFFFFFFFFFFFFFFFFFFFFFFF
+@HISEQ:105:C2UE1ACXX:3:1101:21194:16434 2:N:0:CAAATC
+AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
++
+BBBFFFFFFFFFFIIIFFFFFFFFFFFFB77BFFFFFFFFFFFFFFFFFFFFBBBBFFFFFFFFFFFFFFFFFFFFFFFFFFFBBFFFFFFFFFFFFFFFF
+@HISEQ:105:C2UE1ACXX:3:1101:7164:16848 2:N:0:CAGATC
+AAAAAAAATAGTATACAACATAAAAATTTATTCTTCACTAAAACCCCTTAACCAATACCAACGTTTCCACAAAATTCTACCCTCTACAAAAACAACCTATC
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFFIIIIIIIFFFFBFFFFFFFFFFBBFFFFFFFFFFFFFFFFFFBFFBBBB
+@HISEQ:105:C2UE1ACXX:3:1101:2125:17112 2:N:0:CAGATC
+AAACTCTCTACTAAACAACAATCCCAACCCCACAACACCTTAAACATACTCTACTTCTCTGCCTCCACTATTCAATTTTCAAAAACAAAAACTACCAACAT
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFIFFIIIIIIFFFIIIFFFFFFFFBBBFFFFFFFFFFFFFFFFFFFFFFFB
+@HISEQ:105:C2UE1ACXX:3:1101:6615:17184 2:N:0:CAGATC
+AAAAATAAATTTATTTCAACTACTATTATTCATATACCTCTATAAAAAAACGTATTTTTATAACTTATAACTTATCCTTATAATTAAACACCTTACTCATA
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFFIIIIIIIIIIIIIIIIIIFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
+@HISEQ:105:C2UE1ACXX:3:1101:12454:17532 2:N:0:CAGATC
+CAACTCAAACTCATTTTAACTTCTCCTCCACCTAAAAAAAAACAAAACCCCTAACTCTCAACTTAATACAAAAATCACATTTAACCAATAAAACACGAATA
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFFFFFFFFFFFFFFFFFFFFFFFFBFFFFFFFFFFFFFFFFFFFFFBFFBB
+@HISEQ:105:C2UE1ACXX:3:1101:2584:17964 2:N:0:CAGATC
+AATTCTCTCTCACTCAACTTCTTAACAAACTAACTCCAAAAAAAAACCCTACTTCTAAAACACTAATAACCTAAATAAACACCACAAAAACCCAAAAAGAT
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF<
+@HISEQ:105:C2UE1ACXX:3:1101:9624:17911 2:N:0:CAGATC
+CACAACAACAATAATTCCTCCTACAAATACCCTCATAAACATTTAAAAAAATAAATATATACTACCCCCTAATAATCATTACAAAATCAATACTAAACTAA
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFIIIIIIIIIIIIIIIFFFFFFFFFFFFFFFFFFFFBB'<BFBBBFFFFFF
+@HISEQ:105:C2UE1ACXX:3:1101:19795:18124 2:N:0:CAGATC
+CCAAAACTCCATCCCTATACCTCACCCCCACCCCCGCACTATCAACTTCCTTCATACGCCATTTATAAAAAACTAATCTCTTCAATTCAAATTTCTCTTAA
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIII0BFFIIIIIIIIIIFFFFFFFF'7<BBFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
+@HISEQ:105:C2UE1ACXX:3:1101:2293:18893 2:N:0:CAGATC
+CATCAAACAACCGAATCTTTAAAAAAAACTTTCAAAACAAAATATAAAATTTCAAACTAAAAACAATAAAAACTAATAAATAAATATCTAAAAACGAAAAC
++
+BBBFFFFFFFFFFIIIFIIIIIIIIIIIIIIIIIIIIIIIIIIFFFFIIFFIFFFFFFFFFFFFBFBFFFFFFB<<<BBFBFFFFFFFFFFFFFF<BFFFF
+@HISEQ:105:C2UE1ACXX:3:1101:12741:20220 2:N:0:CAGATC
+AAAAAAAAATAATATACAACATAAAAATTTATTCTTCACTAAAACCCCTTAACCAATACCAACGTTTCCACAAAATTCTACCCTCTACAAAAACAACCTAT
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFIIIFFFFFFFFFFBFFFFFFFFFFFFFFFFBFFFFFFFFFFFFFFFFFFB
+@HISEQ:105:C2UE1ACXX:3:1101:18080:20193 2:N:0:CAGATC
+CTCTACCAAACAAACCAATAATTAATTAATCTTACCTACCAACAAAAAAATTCAACCAACTTCTTAAAACCTACAAAAATCTACATACATCATTAATCATT
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
+@HISEQ:105:C2UE1ACXX:3:1101:18680:20134 2:N:0:CAGATC
+CAAAAAATTTCCAAAACCTACCCCAACCAAAAAAACAAAATAATCTAAATCATTTCAAACTAAATAACCAAAAACCTCTTAAAAAACACCATACTTCCAAA
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFBFFFFFFFFFFB
+@HISEQ:105:C2UE1ACXX:3:1101:19451:20037 2:N:0:CATATC
+ATTTACAACACGAATTACACACGTTTTTCCGAAACACTTTTCATAAACAACCCACTCTAAAAACAAACACCTCAACTAATACTTATTATCATTTTCCAAAC
++
+BBBFFFFFFFF'BFFFIIIIFI'BFFIIFF'BFFFFBFFIIIFIIIFFIIFFFIIBFBFFFFFFFFFBBBB7<BBBBBBBBBBBFBFFFBFFFFFFBFBBB
+@HISEQ:105:C2UE1ACXX:3:1101:14848:20360 2:N:0:CAGATC
+AACTACCGACATCCTGTATCTATACCTCAATCTATATACTCCTCTATAAAACAAACATAACAAAAACACCCTCGATCCTCCCTAATATCTTTTTTTATATA
++
+BBBFFFFFFFFFFIIIFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFFIIIIIIIIIIIIIIIIFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFB
+@HISEQ:105:C2UE1ACXX:3:1101:20622:20397 2:N:0:CAAATC
+CTCCAAATCCCCAAATTTAAACTAATCAAACACAAAAAAATCCCCAAAATATTCTTAATACATATTAAACTATACAAAACTCAATTTACTAAAATCTTTAA
++
+<BBFFFFFFFFFFIIIIIIFIBFFIFIIBFFFFIIIIFIIFFBFFIIIIIIIIIFFFIIIIFFFFFFFFFBFBFFFFFBB<BBBBBBBFBFBBBFBBBBBB
+@HISEQ:105:C2UE1ACXX:3:1101:12295:20565 2:N:0:CAGATC
+ATATCTAATAAAAAAACTTTCATACGTATACAAATACTCTAAAAATCCAAAACATTCAATCCCCTAAAACTAAAATAACAAATACTAAAAATCAAACCTAA
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIFIIIIIIIIIIIIIIIIIIIIIIIFFIIIIIIIIIIIIIIFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
+@HISEQ:105:C2UE1ACXX:3:1101:8987:20904 2:N:0:CAGATC
+TACACACACACGCCAAACACACAATCCACCACCACCAAAACTCCATCGATAACACGCAAAACAACTATCACCTCTAAAAAAAAATCCACATAACCGAAAAA
++
+BBBFFFFFFFFFFIIIIIIIIIIIIFFFIBFFIFFIIIIIIFFFIIFFIIFFFFFBFFFBFBBFFBB<BBBBBBBFFFFFFFFF<BBBFFBFBBB7<BFFF
+@HISEQ:105:C2UE1ACXX:3:1101:11915:21129 2:N:0:CAGATC
+CAAAAAATACTTCTTAACAAACAAATCCTAAAATTACCCACTCCTCATTATAAAACCAAAAATTACTTCACTATTTAACACATACTATTTCTAAAACGAAC
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFFIIIFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
+@HISEQ:105:C2UE1ACXX:3:1101:12442:21376 2:N:0:CAGATC
+AACCTACCAAAAACAAACCACGCTAAAAAACCATAATAACTAATATAACTTTCACCTTATATTTTTTTATTTACTTACTTACTTTTTTATATTTTATTCCA
++
+BBBFFFFFFFFFFIIIIIIIIFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
+@HISEQ:105:C2UE1ACXX:3:1101:10225:21919 2:N:0:CAGATC
+ATAAAAAAATAAAAAAAAAAAAATAACTATACAAAATAACCCTCTAACCTCCTCATAAATATCATAACATATACACAACTACACACCACACACAAACTTAA
++
+BBBFFFFFFFFFFIIIIIIIIIIFFFB<<<B<BFFB<BBBFBBBBFFFFBBB7BBBBFF<B<<B<BBBB<B0<BBBBBBBBFFB<BBBB7<B<BBB<B<BB
+@HISEQ:105:C2UE1ACXX:3:1101:12240:21986 2:N:0:CAGATC
+TCCTAATTTCAAACTCTCCCTCCTACACAAAAAATAATTCTCCTATAATTCCTCCCTCAATCCCAAACCAAAACTACCCCCTATATTAATAACAATAGATC
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFIIFFFFFFFFFFFFFBFFFFFFFFFFFFFFFFFFF
+@HISEQ:105:C2UE1ACXX:3:1101:2199:22213 2:N:0:CAGATC
+AATCAAAAAACCAAAAACCTCTAATACCCACCCCTAAACAAACCTAAAAAATAACGCCGATATAAAACAATCCAATCAATAAAAAAATAAAAACAATAATA
++
+BBBFFFFFFFFFFIIIFIIIIIIIIFFIIIIIIIIIIIIIIIIIIIIIIIIFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
+@HISEQ:105:C2UE1ACXX:3:1101:9023:22492 2:N:0:CAGATC
+TAATAAAAAAATTCTTTCTTAATAACCCTAAATTCCTCTTCCTCCCTCACCATAACTAACATAACACGTCCTACCAAAAACAATCCCCAACAAACTATCAC
++
+BBBFFFFFFFFFFIIIIIIIIIIIIFIIFFIFFFFFBFFFIIIIIIFFFFFIFFIFFIFFIFFIIIF7<BB<BBFFFFBFFBBBBBBBFFFBFFFBF<<<<
+@HISEQ:105:C2UE1ACXX:3:1101:13060:22287 2:N:0:CAGATC
+ACTCATCACTAAAACGACCAAAAAATACATAAAATCACACCCGTAACTCCTTTATATTATAACTAAACTAACGCAATTAAAAATTACAACAAAAAATAATA
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIFFFIFIIIIIIIFIIIIIIIIIIIFFFFFFFFFFFFFFFFFBFFFFFFFFFFFFFFFFFFFFFFFFFFFF
+@HISEQ:105:C2UE1ACXX:3:1101:16084:22385 2:N:0:CAGATC
+TTAAAATATATATCGTCAACACCAAAAAAACAAAATCAAACAAAACTCTCAAAACTATAAAAACACAAACAATCCCATTTAAAAAATCTTCCATAAAACTA
++
+BBBFFFFFFFFFFIIFIIIIIIIIIIIIIIFIIIIIIIIIIIIIIIIIIIFFIIIFIFFFFFFFFFFFFFFF<<BBFBBFFFFFBFBBBBFFFFFFFFFBF
+@HISEQ:105:C2UE1ACXX:3:1101:7272:22581 2:N:0:CAGATC
+CTAACTCCACCTATAAAAAACCTAAAAAATCGATCAAAATACTCCTCCTCCTTCTATTCCTAAAAAAAATAAAATTCTTTAAAAAATTCTTAATATCATTA
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIFIIIIIIIIIIFFIIFIIIIIFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
+@HISEQ:105:C2UE1ACXX:3:1101:10060:23020 2:N:0:CAGATC
+CAAAATAATATAAATCTAAAAATAAAAACACCATCCTTACTTCCTTTTAAAAAAAATACTCAAAACTATAAGACTACCCTTTCCTCTTAAAAACCTAATAC
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFFFFFFFFFFBBFFFFFFFFFFFFFFFFFFFFFFBFFBFF
+@HISEQ:105:C2UE1ACXX:3:1101:14440:23104 2:N:0:CAGATC
+ATATTCTATAAAACACCAAAAATTCCTAAAAACCTCTAAAAACCAACTCCTACAAAAAAAACAACCCACAAAACAAAAATCAACTCCCCAAACCTTAACTT
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFIIIIIIIFFFFFFFFFFFFFFFFFFFFBFFFFFFFFFFFFFFFFFFFFB
+@HISEQ:105:C2UE1ACXX:3:1101:6941:23338 2:N:0:CAGATC
+CTTATTCATTCCATCGCCTATAACATAAAAACAAAAATAAACATTATCATAACAACCTATAATCAACACCCAAAACCAAATTCAACACACTATAACTCCTA
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFIIIIIIIFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
+@HISEQ:105:C2UE1ACXX:3:1101:10069:23622 2:N:0:CAGATC
+CTTAAAATTCACTTCACATTAACTTTTAAATATTATTCCAATATATTTAAAATAACACTTTAAAAAAAACCTAAATTAAAAAAACTAACCTTCTACAAATA
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
+@HISEQ:105:C2UE1ACXX:3:1101:14079:24078 2:N:0:CAGATC
+ATAAAACTAAACTTTCATATATTACTCTTAAATTTTTTTCCTAACTATAAAAAACTTTACAAAATACACCCTATTACTTTCAAACTACCAAAACTACCTAA
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
+@HISEQ:105:C2UE1ACXX:3:1101:12064:24631 2:N:0:CCGATC
+AAAAAAACCACCATTCTACAATCCCTTAAAAAAACCCCCAATAAAAAATAAACCCAAACCTAAACAAACAAAAAAACTCAAAAAATTAACTCTAAATATCA
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFFFFFFFFFFFFFFFFFBFFFFFFFFFFFFFFFFFFFFFFFBBBFFBFFFFFFFFFF
+@HISEQ:105:C2UE1ACXX:3:1101:6662:24968 2:N:0:CAGATC
+CTCCCATACTTAAAAAAATTAAAACCCAAAAACAATTCTACCCTCACAAATACCAAAAAAACGAAACACAATACCATAAACCTAAACAATTAAACGACACC
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFFFFBFFFFFFFFBFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
+@HISEQ:105:C2UE1ACXX:3:1101:11630:24964 2:N:0:TAGATC
+AAAAAAACATACCAACAACCTTTCAAATACAAAACTCCGTAAAATCTATACTATCTAACAATACCCTAAATCAAAAAAAAAACCAATCCTTAACATCCAAA
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIFFIIIIIIIIIIIIIIIIIIIIFFFFFFFFFFFFFFFFFFFFFBFBFBBFBFFFFFBFFFFF
+@HISEQ:105:C2UE1ACXX:3:1101:12594:24878 2:N:0:CCGATC
+ATATAATATTACCTATTTATTTTTATTATTATTATTATTATTATTTATTTATTTATTCTAAACACCTCCCAAAACATTCCAACTTTCTTCATTAAATATAA
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIFFFFFFIIIFFIFIIIFIIIIIIIIIIIFFFFIIIFFFFIIIIIIIIIIFFIIIIFIIFFFFFFFFFFFFFFFF
+@HISEQ:105:C2UE1ACXX:3:1101:4483:25030 2:N:0:CAGATC
+CCTAATACTCTATACTAAACAAATAACAAAAAACTTCCTCCTACCTCTTTAAAAAACCCATAAACTTACTCAAATACAAATATAACAAAATAATATAAATC
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFIIIIIIIIIFIFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFB
+@HISEQ:105:C2UE1ACXX:3:1101:12198:25235 2:N:0:CAGATC
+CACAAAAACAACATACCTCTTAATAATCTTTCAAACTTACACCAAATCTATTTCTATCCTCATCTTCCATTTATAAAAACCAAAACTATACAACCCAATCT
++
+BBBFFFFFFFFFFFIFFFFFFBFBFFBBFF<FIBFFIF<BFIIIIIIIIFFFFFBFBFBBFF<B<BFFFBBFIIIIFIIFFFFFFFFFBFBFFBBBBBBB<
+@HISEQ:105:C2UE1ACXX:3:1101:20477:25084 2:N:0:CATATC
+AAAACCCAACTCTTCCACCAAAAAAATTACTTTATCTCTAATACTCTTAAAATACCCTATATTATCCTTATACAAAAACACTTAATTAACTTCCTAATTAA
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIFIIFIIIIIIIIFIIIIIIIIIIIIIF0<BFFFFFFFFFFFFBBBFFFFFFFFFBBB<<BB70
+@HISEQ:105:C2UE1ACXX:3:1101:5725:25359 2:N:0:CAGATC
+ATAACTTAACTCTCTAATAACCTTAACTATTCCTCTCCCTAACCTCCACAAATACTATATATAATACTATACTTCTTAATAAACTTACTTAACATAAACCA
++
+BBBFFFFFFFFFFIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIFFFFFFFFFFFFFFFFFFF
+@HISEQ:105:C2UE1ACXX:3:1101:5502:25591 2:N:0:CAGATC
+TTCTTAATTCCATCTTTAAACAATAATATTAAAATATTACTTCCCAAAATACAAACCCATATCCATATCCAAAAACTAAACAACCTCTACACCTCAACAAA
++
+<<<BBBBBBBBBBBBBBBBB70B00B000<0BBB###################################################################
diff -r 000000000000 -r 8db56d2f8b72 test-data/t_R2.fastq.gz
Binary file test-data/t_R2.fastq.gz has changed
diff -r 000000000000 -r 8db56d2f8b72 umi-tools_counts.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/umi-tools_counts.xml	Thu Jun 21 15:20:14 2018 -0400
@@ -0,0 +1,188 @@
+<tool id="umi_tools_count" name="UMI-tools count" version="@VERSION@.0">
+    <description>Count UMIs from BAM files</description>
+    <macros>
+        <import>macros.xml</import>
+        <xml name="sanitize_tag" >
+            <sanitizer invalid_char="">
+                <valid initial="string.letters,string.digits" />
+            </sanitizer>
+        </xml>
+    </macros>
+    <expand macro="requirements" />
+    <command detect_errors="exit_code"><![CDATA[
+
+    ln -s '${input_bam}' 'input.bam' &&
+    ln -s '${input_bam.metadata.bam_index}' 'input.bam.bai' &&
+    
+    umi_tools count
+        -I input.bam
+        '$bam_paired'
+        --extract-umi-method='$barcodes.extract_umi_method.value'
+        #if $barcodes.extract_umi_method == 'read_id':
+            --umi-separator='$barcodes.delimiter'
+        #else if $barcodes.extract_umi_method == 'tag':
+            --umi-tag='$barcodes.umi_tag'
+            --cell-tag='$barcodes.cell_tag'
+        #end if
+        --method='$grouping_method.value'
+        --edit-distance-threshold='$hamming_distance'
+        --mapping-quality='$advanced.mapping_quality'
+        --per-gene
+        $wide_format_cell_counts
+        $advanced.per_contig
+        '$advanced.per_cell'
+        #if $advanced.gene_tag:
+            --gene-tag='$advanced.gene_tag'
+        #end if
+        #if $advanced.skip_tags_regex.value:
+            --skip-tags-regex='$advanced.skip_tags_regex'
+        #end if
+        #if $advanced.random_seed != 0:
+            --random-seed='$advanced.random_seed'
+        #end if
+        -S '$out_counts'
+        -L '$out_log'
+    ]]></command>
+    <inputs>
+        <param name="input_bam" type="data" format="bam" label="Sorted BAM file" help="Please use the samtools sort tool to ensure a correct BAM input" />
+
+        <param name="bam_paired" type="boolean" truevalue="--paired" falsevalue="" checked="false"
+               label="Bam is paired-end"
+               help="both read pairs will be output. This will also force the use of the template length to determine 
+reads with the same mapping coordinates." />
+
+        <conditional name="barcodes" >
+            <param name="extract_umi_method" type="select" label="Umi Extract Method" help="How are the barcodes encoded in the read?" >
+                <option value="read_id" selected="true">Barcodes are contained at the end of the read seperated by a delimiter</option>
+                <option value="tag" >Barcodes are contained in tags</option>
+                <option value="umis" >Barcodes were extracted using umis</option>
+            </param>
+            <when value="read_id" >
+                <param name="delimiter" type="text" label="Delimiter between read id and the UMI" value="_" >
+                    <expand macro="sanitize_tag" />
+                </param>
+            </when>
+            <when value="tag" >
+                <param name="umi_tag" type="text" label="Tag which contains the UMI" >
+                    <expand macro="sanitize_tag" />
+                </param>
+                <param name="cell_tag" type="text" label="Tag which contains the cell barcode" >
+                    <expand macro="sanitize_tag" />
+                </param>
+            </when>
+            <when value="umis"></when>
+        </conditional>
+
+        <param name="grouping_method" type="select" label="Method to identify group of reads" help="UMIs with the same (or similar) codes can be grouped together. The simplest methods 'unique' and 'percentile' group identical 
+UMIs, however 'cluster', 'adjacency', and 'directional' can group similar umis with edit distances less than some threshold. Unique: Reads group share the exact same UMI. Percentile: Reads group share the same UMI, and UMIs with 
+counts &lt; 1% of the median counts for UMIs at the same position are ignored. Cluster: Identify clusters of connected UMIs (based on hamming distance threshold). Adjacency: Same as cluster, but considers only directly ajacent 
+UMIs in the cluster. Directional: Identify cluster of connected UMIs based on hamming distance and umi." >
+            <option value="unique" >Unique</option>
+            <option value="percentile">Percentile</option>
+            <option value="cluster">Cluster</option>
+            <option value="adjacency">Adjacency</option>
+            <option value="directional" selected="true" >Directional</option>
+        </param>
+
+        <param name="hamming_distance" type="integer" label="Edit distance threshold" min="0" value="1" />
+        <param name="wide_format_cell_counts" type="boolean" truevalue="--wide-format-cell-counts" falsevalue="" checked="false" label="Output a mtrix of genes and cells, instead of a flat file" />
+
+        <section name="advanced" title="Extra parameters" >
+            <param name="mapping_quality" type="integer" min="0" value="0" label="Minimum mapping quality" />
+            <!-- Currently hard-coded parameter. Leave here if useful to future wrapper  -->
+            <!-- <param argument="-\-per-gene" name="per_gene" type="text" label="Group reads together if they have the same gene" help="Reads will be grouped together if they have the same gene. This is useful if your library 
+prep generates PCR duplicates with non-identical alignment positions such as CEL-Seq. Note this option is hardcoded to be on with the count command. I.e counting is always performed per-gene. Must be combined with either 
+-\-gene-tag or -\-per-contig option" /> -->
+            <param name="gene_tag" type="text" label="Deduplicate per gene." help="The gene information is encoded in the bam read tag." value="" >
+                <expand macro="sanitize_tag" />
+            </param>
+            <param name="skip_tags_regex" type="text" label="Skip any reads where the gene matches this tag" value="" >
+                <sanitizer invalid_char="">
+                    <valid initial="string.letters,string.digits">
+                        <add value="!="/>
+                        <add value="-"/>
+                        <add value="_"/>
+                        <add value="."/>
+                        <add value="?"/>
+                        <add value="&lt;"/><!-- left triangle bracket -->
+                        <add value="&gt;"/><!-- right triangle bracket -->
+                        <add value="&#91;"/> <!-- left square bracket -->
+                        <add value="&#93;"/> <!-- right square bracket -->
+                        <add value="&#94;"/> <!-- caret -->
+                        <add value="&#123;"/> <!-- left curly -->
+                        <add value="&#125;"/> <!-- right curly -->
+                        <add value="&#40;"/> <!-- left parenthesis -->
+                        <add value="&#41;"/> <!-- right parenthesis -->
+                    </valid>
+                </sanitizer>
+            </param>
+            <param name="per_contig" type="boolean" truevalue="--per-contig" falsevalue="" checked="false"
+                label="Deduplicate per contig (field 3 in BAM; RNAME)"
+                help="All reads with the same contig will be considered to have the same alignment position. This is useful if you have aligned to a reference transcriptome with one transcript per gene." />
+            <param name="per_cell" type="boolean" truevalue="--per-cell" falsevalue="" checked="false"
+                label="Group reads only if they have the same cell barcode." />
+            <param name="random_seed" type="integer" min="0" value="0" label="Random Seed" />
+        </section>        
+    </inputs>
+    <outputs>
+        <data name="out_counts" format="tsv" />
+        <data name="out_log" format="txt" />
+    </outputs>
+    <tests>
+        <test><!--count_single_gene_tag:-->
+            <param name="input_bam" value="chr19_gene_tags.bam" />
+            <param name="random_seed" value="123456789" />
+            <param name="grouping_method" value="directional" />
+            <param name="gene_tag" value="XF" />
+            <param name="skip_tags_regex" value="^[__|Unassigned]" />
+            <param name="extract_umi_method" value="umis" />
+            <output name="out_counts" value="count_single_gene_tag.tsv" />
+        </test>
+        <test><!--count_single_cells_gene_tag:-->
+            <param name="input_bam" value="chr19_gene_tags.bam" />
+            <param name="random_seed" value="123456789" />
+            <param name="grouping_method" value="directional" />
+            <param name="gene_tag" value="XF" />
+            <param name="skip_tags_regex" value="^[__|Unassigned]" />
+            <param name="per_cell" value="true" /><!-- new -->
+            <param name="extract_umi_method" value="umis" />
+            <output name="out_counts" value="count_single_cells_gene_tag.tsv" />
+        </test>
+        <test><!--count_single_cells_wide_gene_tag:-->
+            <param name="input_bam" value="chr19_gene_tags.bam" />
+            <param name="random_seed" value="123456789" />
+            <param name="grouping_method" value="directional" />
+            <param name="gene_tag" value="XF" />
+            <param name="skip_tags_regex" value="^[__|Unassigned]" />
+            <param name="per_cell" value="true" /><!-- new -->
+            <param name="extract_umi_method" value="umis" />
+            <param name="wide_format_cell_counts" value="true" />
+            <output name="out_counts" value="count_single_cells_gene_tag_wide.tsv" />
+        </test>
+    </tests>
+    <help><![CDATA[
+
+UMI Tools count - Count reads per gene from BAM using UMIs
+----------------------------------------------------------
+
+Purpose
+-------
+
+The purpose of this command is to count the number of reads per gene based
+on the mapping co-ordinate and the UMI attached to the read.
+
+
+It is assumed that the FASTQ files were processed with extract_umi.py
+before mapping and thus the UMI is the last word of the read name. e.g:
+
+@HISEQ:87:00000000_AATT
+
+where AATT is the UMI sequeuence.
+
+If you have used an alternative method which does not separate the
+read id and UMI with a "_", such as bcl2fastq which uses ":", you can
+specify the separator, or if your UMIs are encoded in a tag you can also specify this.
+
+    ]]></help>
+    <expand macro="citations" />
+</tool>