Mercurial > repos > iuc > umi_tools_extract

annotate test-data/out_wl_single.txt @ 7:4756f7765416 draft

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author iuc
date Sat, 14 Jul 2018 06:14:14 -0400
parents 475ee31c61d9
children a472e995d157
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1 # output generated by whitelist --bc-pattern=CCCCCCCCNNNNNNNN --subset-reads=0 --stdin=/tmp/tmpibtvD6/files/000/dataset_1.dat --method=reads --plot-prefix=OUT --3prime
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2 # job started at Sun Feb 25 10:49:56 2018 on bag -- cb0db520-8a4e-4040-aa88-93efc0718fa8
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3 # pid: 2217, system: Linux 4.13.0-32-generic #35-Ubuntu SMP Thu Jan 25 09:13:46 UTC 2018 x86_64
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4 # blacklist_tsv : None
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5 # cell_number : False
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6 # compresslevel : 6
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7 # error_correct_threshold : 1
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8 # expect_cells : False
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9 # extract_method : string
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10 # filter_cell_barcodes : False
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11 # log2stderr : False
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12 # loglevel : 1
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13 # method : reads
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14 # pattern : CCCCCCCCNNNNNNNN
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15 # pattern2 : None
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16 # plot_prefix : OUT
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17 # prime3 : True
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18 # random_seed : None
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19 # read2_in : None
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20 # short_help : None
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21 # stderr : <_io.TextIOWrapper name='<stderr>' mode='w' encoding='UTF-8'>
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22 # stdin : <_io.TextIOWrapper name='/tmp/tmpibtvD6/files/000/dataset_1.dat' mode='r' encoding='UTF-8'>
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23 # stdlog : <_io.TextIOWrapper name='<stdout>' mode='w' encoding='UTF-8'>
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24 # stdout : <_io.TextIOWrapper name='<stdout>' mode='w' encoding='UTF-8'>
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25 # subset_reads : 0
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26 # timeit_file : None
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27 # timeit_header : None
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28 # timeit_name : all
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29 # whitelist_tsv : None
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30 ## 2018-02-25 10:49:56,061 INFO Starting barcode extraction
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31 ## 2018-02-25 10:49:56,061 INFO Parsed 0 reads
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32 ## 2018-02-25 10:49:56,062 INFO Starting - whitelist determination
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33 ## 2018-02-25 10:49:57,383 INFO Finished - whitelist determination
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34 ## 2018-02-25 10:49:57,383 INFO Starting - finding putative error cell barcodes
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35 ## 2018-02-25 10:49:57,383 INFO Finished - finding putative error cell barcodes
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36 ## 2018-02-25 10:49:57,383 INFO Writing out whitelist
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37 AAAAAAAA AAAAAACA,AAACAAAA,AATAAAAA 3 1,1,1
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38 ACAAAAAC 2
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39 ACAACAAA 2
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40 TTACTTAA TTACTAAA 2 1
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41 ## 2018-02-25 10:49:57,383 INFO Parsed 100 reads
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42 ## 2018-02-25 10:49:57,383 INFO 100 reads matched the barcode pattern
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43 ## 2018-02-25 10:49:57,383 INFO Found 95 unique cell barcodes
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44 # job finished in 1 seconds at Sun Feb 25 10:49:57 2018 -- 2.25 0.06 0.00 0.00 -- cb0db520-8a4e-4040-aa88-93efc0718fa8