Mercurial > repos > iuc > umi_tools_extract

comparison umi-tools_extract.xml @ 16:7accf7407811 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/umi_tools commit b5b83fd1cf0a44edcd9a6cc7562a3add2f47bd3f"
author iuc
date Sat, 23 Oct 2021 20:38:07 +0000
parents 27ac32a22ad2
children 7a7e33d28f62
comparison
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15:27ac32a22ad2 16:7accf7407811
85 <expand macro="input_types"> 85 <expand macro="input_types">
86 <param argument="--reconcile-pairs" type="boolean" truevalue="--reconcile-pairs" falsevalue="" checked="false" label="Allow unpaired reads" help="Allow the presences of reads in read2 input that are not present in read1 input. This allows cell barcode filtering of read1s without considering read2s" /> 86 <param argument="--reconcile-pairs" type="boolean" truevalue="--reconcile-pairs" falsevalue="" checked="false" label="Allow unpaired reads" help="Allow the presences of reads in read2 input that are not present in read1 input. This allows cell barcode filtering of read1s without considering read2s" />
87 </expand> 87 </expand>
88 <expand macro="fastq_barcode_extraction_options_macro"/> 88 <expand macro="fastq_barcode_extraction_options_macro"/>
89 89
90 <param argument="--whitelist" type="data" optional="true" format="tabular,tsv" label="Allowlist of accepted barcodes" /> 90 <param argument="--whitelist" type="data" optional="true" format="txt,tabular,tsv" label="Allowlist of accepted barcodes" />
91 <param argument="--blacklist" type="data" optional="true" format="tabular,tsv" label="Denylist of accepted barcodes" /> 91 <param argument="--blacklist" type="data" optional="true" format="txt,tabular,tsv" label="Denylist of accepted barcodes" />
92 <param argument="--error-correct-cell" type="boolean" truevalue="--error-correct-cell" falsevalue="" checked="false" label="Apply correction to cell barcodes?" help="This only applies if your barcode file has two columns output from the umi_tools whitelist command" /> 92 <param argument="--error-correct-cell" type="boolean" truevalue="--error-correct-cell" falsevalue="" checked="false" label="Apply correction to cell barcodes?" help="This only applies if your barcode file has two columns output from the umi_tools whitelist command" />
93 93
94 <conditional name="quality"> 94 <conditional name="quality">
95 <param name="quality_selector" type="select" label="Enable quality filter?" > 95 <param name="quality_selector" type="select" label="Enable quality filter?" >
96 <option value="false">No</option> 96 <option value="false">No</option>