Mercurial > repos > iuc > umi_tools_extract

diff macros.xml @ 17:f3759eec3018 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/umi_tools commit 31bad8c5bf75981eafcd19ec6b00593f184fdeb8"
author iuc
date Thu, 18 Nov 2021 08:24:00 +0000
parents 7accf7407811
children 015cf18f4a15
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--- a/macros.xml	Sat Oct 23 20:38:07 2021 +0000
+++ b/macros.xml	Thu Nov 18 08:24:00 2021 +0000
@@ -4,7 +4,7 @@
     <!-- macros applying to all umi_tools -->
 
     <token name="@TOOL_VERSION@">1.1.2</token>
-    <token name="@VERSION_SUFFIX@">1</token>
+    <token name="@VERSION_SUFFIX@">2</token>
     <token name="@PROFILE@">21.01</token>
     <xml name="requirements">
         <requirements>
@@ -56,6 +56,8 @@
                 <add value="&#123;"/><!-- left brace -->
                 <add value="&#125;"/><!-- right brace -->
                 <add value="&#94;"/> <!-- caret -->
+                <add value="&#36;"/> <!-- dollar sign-->
+                <add value="&#43;" /><!-- plus sign -->
                 <add value="-"/>
                 <add value="!"/>
             </valid>
@@ -174,8 +176,8 @@
         <conditional name="extract_method_cond">
             <param argument="--extract-method" type="select" label="Barcode Extraction Method"
                    help="If bracketed expressions are used in the above barcode pattern, then set this to 'regex'. Otherwise leave as 'string'" >
-                <option value="string" selected="true" />
-                <option value="regex" />
+                <option value="string" selected="true">String</option>
+                <option value="regex">Regex</option>
             </param>
             <when value="string">
                 <param argument="--3prime" name="prime3" type="boolean" label="Is barcode on 3' end of the read?"