Mercurial > repos > iuc > umi_tools_extract

view test-data/out_paired.log @ 15:27ac32a22ad2 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/umi_tools commit bf6a3aa532e8f9d122da4c1e39f3e256ae587b79"
author iuc
date Mon, 13 Sep 2021 14:52:06 +0000
parents d1015c2516b7
children
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# output generated by extract --bc-pattern=NNNXXX --stdin=input_read1.gz --read2-in=input_read2.gz --stdout out1.gz --read2-out=out2.gz --log=/tmp/tmpAvWtMd/files/000/dataset_20.dat
# job started at Wed Jan  3 17:06:39 2018 on tzk-ThinkPad-T450s -- 9eecaab6-9562-4b29-8a2e-ae6c1034a14c
# pid: 22903, system: Linux 4.10.0-42-generic #46~16.04.1-Ubuntu SMP Mon Dec 4 15:57:59 UTC 2017 x86_64
# blacklist                               : None
# compresslevel                           : 6
# error_correct_cell                      : False
# extract_method                          : string
# filter_cell_barcode                     : None
# filter_cell_barcodes                    : False
# log2stderr                              : False
# loglevel                                : 1
# pattern                                 : NNNXXX
# pattern2                                : None
# prime3                                  : None
# quality_encoding                        : None
# quality_filter_mask                     : None
# quality_filter_threshold                : None
# random_seed                             : None
# read2_in                                : input_read2.gz
# read2_out                               : out2.gz
# read2_stdout                            : False
# reads_subset                            : None
# reconcile                               : False
# retain_umi                              : None
# short_help                              : None
# stderr                                  : <_io.TextIOWrapper name='<stderr>' mode='w' encoding='UTF-8'>
# stdin                                   : <_io.TextIOWrapper name='input_read1.gz' encoding='ascii'>
# stdlog                                  : <_io.TextIOWrapper name='/tmp/tmpAvWtMd/files/000/dataset_20.dat' mode='a' encoding='UTF-8'>
# stdout                                  : <_io.TextIOWrapper name='out1.gz' encoding='ascii'>
# timeit_file                             : None
# timeit_header                           : None
# timeit_name                             : all
# whitelist                               : None
2018-01-03 17:06:39,365 INFO Starting barcode extraction
2018-01-03 17:06:39,377 INFO Input Reads: 100
2018-01-03 17:06:39,377 INFO Reads output: 100
# job finished in 0 seconds at Wed Jan  3 17:06:39 2018 --  0.60  0.05  0.00  0.00 -- 9eecaab6-9562-4b29-8a2e-ae6c1034a14c