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comparison test-data/out_wl_single.txt @ 2:4325a02ea7a3 draft

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planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
author iuc
date Sun, 25 Feb 2018 13:07:29 -0500
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children 3b8fecdf9058
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1:f73f13641bb6 2:4325a02ea7a3
1 # output generated by whitelist --bc-pattern=CCCCCCCCNNNNNNNN --subset-reads=0 --stdin=/tmp/tmpibtvD6/files/000/dataset_1.dat --method=reads --plot-prefix=OUT --3prime
2 # job started at Sun Feb 25 10:49:56 2018 on bag -- cb0db520-8a4e-4040-aa88-93efc0718fa8
3 # pid: 2217, system: Linux 4.13.0-32-generic #35-Ubuntu SMP Thu Jan 25 09:13:46 UTC 2018 x86_64
4 # blacklist_tsv : None
5 # cell_number : False
6 # compresslevel : 6
7 # error_correct_threshold : 1
8 # expect_cells : False
9 # extract_method : string
10 # filter_cell_barcodes : False
11 # log2stderr : False
12 # loglevel : 1
13 # method : reads
14 # pattern : CCCCCCCCNNNNNNNN
15 # pattern2 : None
16 # plot_prefix : OUT
17 # prime3 : True
18 # random_seed : None
19 # read2_in : None
20 # short_help : None
21 # stderr : <_io.TextIOWrapper name='<stderr>' mode='w' encoding='UTF-8'>
22 # stdin : <_io.TextIOWrapper name='/tmp/tmpibtvD6/files/000/dataset_1.dat' mode='r' encoding='UTF-8'>
23 # stdlog : <_io.TextIOWrapper name='<stdout>' mode='w' encoding='UTF-8'>
24 # stdout : <_io.TextIOWrapper name='<stdout>' mode='w' encoding='UTF-8'>
25 # subset_reads : 0
26 # timeit_file : None
27 # timeit_header : None
28 # timeit_name : all
29 # whitelist_tsv : None
30 ## 2018-02-25 10:49:56,061 INFO Starting barcode extraction
31 ## 2018-02-25 10:49:56,061 INFO Parsed 0 reads
32 ## 2018-02-25 10:49:56,062 INFO Starting - whitelist determination
33 ## 2018-02-25 10:49:57,383 INFO Finished - whitelist determination
34 ## 2018-02-25 10:49:57,383 INFO Starting - finding putative error cell barcodes
35 ## 2018-02-25 10:49:57,383 INFO Finished - finding putative error cell barcodes
36 ## 2018-02-25 10:49:57,383 INFO Writing out whitelist
37 AAAAAAAA AAAAAACA,AAACAAAA,AATAAAAA 3 1,1,1
38 ACAAAAAC 2
39 ACAACAAA 2
40 TTACTTAA TTACTAAA 2 1
41 ## 2018-02-25 10:49:57,383 INFO Parsed 100 reads
42 ## 2018-02-25 10:49:57,383 INFO 100 reads matched the barcode pattern
43 ## 2018-02-25 10:49:57,383 INFO Found 95 unique cell barcodes
44 # job finished in 1 seconds at Sun Feb 25 10:49:57 2018 -- 2.25 0.06 0.00 0.00 -- cb0db520-8a4e-4040-aa88-93efc0718fa8