Mercurial > repos > iuc > umi_tools_group

comparison macros.xml @ 19:a827e3a209fa draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/umi_tools commit 11a7415c7f8a44a3f990080533c1de43a41d1e2e
author iuc
date Fri, 28 Feb 2025 20:42:09 +0000
parents 7f3b9b5db85c
children
comparison
equal deleted inserted replaced
18:7f3b9b5db85c 19:a827e3a209fa
7 <token name="@VERSION_SUFFIX@">0</token> 7 <token name="@VERSION_SUFFIX@">0</token>
8 <token name="@PROFILE@">23.1</token> 8 <token name="@PROFILE@">23.1</token>
9 <xml name="requirements"> 9 <xml name="requirements">
10 <requirements> 10 <requirements>
11 <requirement type="package" version="@TOOL_VERSION@">umi_tools</requirement> 11 <requirement type="package" version="@TOOL_VERSION@">umi_tools</requirement>
12 <yield /> 12 <requirement type="package" version="1.21">samtools</requirement>
13 <requirement type="package" version="4.7">sed</requirement>
13 </requirements> 14 </requirements>
14 </xml> 15 </xml>
15 <xml name="citations"> 16 <xml name="citations">
16 <citations> 17 <citations>
17 <citation type="doi">10.1101/gr.209601.116</citation> 18 <citation type="doi">10.1101/gr.209601.116</citation>
549 </section> 550 </section>
550 </xml> 551 </xml>
551 <token name="@GROUPDEDUP_OPTIONS@"><![CDATA[ 552 <token name="@GROUPDEDUP_OPTIONS@"><![CDATA[
552 $gd.buffer_whole_contig 553 $gd.buffer_whole_contig
553 $gd.whole_contig 554 $gd.whole_contig
554 $gd.multimapping_detection_method 555 #if $gd.multimapping_detection_method
556 --multimapping-detection-method $gd.multimapping_detection_method
557 #end if
555 ]]></token> 558 ]]></token>
556 559
557 <xml name="log_input_macro"> 560 <xml name="log_input_macro">
558 <param argument="--log" type="boolean" label="Output log?" truevalue="--log" falsevalue="" help="Choose if you want to generate a text file containing logging information" /> 561 <param argument="--log" type="boolean" label="Output log?" truevalue="--log" falsevalue="" help="Choose if you want to generate a text file containing logging information" />
559 </xml> 562 </xml>