Mercurial > repos > iuc > umi_tools_group
diff test-data/out_wl_single.txt @ 2:4325a02ea7a3 draft
planemo upload commit 8da5246c32d60a49e6b6b9027c9adc0a31d4bc5a
author | iuc |
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date | Sun, 25 Feb 2018 13:07:29 -0500 |
parents | |
children | 3b8fecdf9058 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/out_wl_single.txt Sun Feb 25 13:07:29 2018 -0500 @@ -0,0 +1,44 @@ +# output generated by whitelist --bc-pattern=CCCCCCCCNNNNNNNN --subset-reads=0 --stdin=/tmp/tmpibtvD6/files/000/dataset_1.dat --method=reads --plot-prefix=OUT --3prime +# job started at Sun Feb 25 10:49:56 2018 on bag -- cb0db520-8a4e-4040-aa88-93efc0718fa8 +# pid: 2217, system: Linux 4.13.0-32-generic #35-Ubuntu SMP Thu Jan 25 09:13:46 UTC 2018 x86_64 +# blacklist_tsv : None +# cell_number : False +# compresslevel : 6 +# error_correct_threshold : 1 +# expect_cells : False +# extract_method : string +# filter_cell_barcodes : False +# log2stderr : False +# loglevel : 1 +# method : reads +# pattern : CCCCCCCCNNNNNNNN +# pattern2 : None +# plot_prefix : OUT +# prime3 : True +# random_seed : None +# read2_in : None +# short_help : None +# stderr : <_io.TextIOWrapper name='<stderr>' mode='w' encoding='UTF-8'> +# stdin : <_io.TextIOWrapper name='/tmp/tmpibtvD6/files/000/dataset_1.dat' mode='r' encoding='UTF-8'> +# stdlog : <_io.TextIOWrapper name='<stdout>' mode='w' encoding='UTF-8'> +# stdout : <_io.TextIOWrapper name='<stdout>' mode='w' encoding='UTF-8'> +# subset_reads : 0 +# timeit_file : None +# timeit_header : None +# timeit_name : all +# whitelist_tsv : None +## 2018-02-25 10:49:56,061 INFO Starting barcode extraction +## 2018-02-25 10:49:56,061 INFO Parsed 0 reads +## 2018-02-25 10:49:56,062 INFO Starting - whitelist determination +## 2018-02-25 10:49:57,383 INFO Finished - whitelist determination +## 2018-02-25 10:49:57,383 INFO Starting - finding putative error cell barcodes +## 2018-02-25 10:49:57,383 INFO Finished - finding putative error cell barcodes +## 2018-02-25 10:49:57,383 INFO Writing out whitelist +AAAAAAAA AAAAAACA,AAACAAAA,AATAAAAA 3 1,1,1 +ACAAAAAC 2 +ACAACAAA 2 +TTACTTAA TTACTAAA 2 1 +## 2018-02-25 10:49:57,383 INFO Parsed 100 reads +## 2018-02-25 10:49:57,383 INFO 100 reads matched the barcode pattern +## 2018-02-25 10:49:57,383 INFO Found 95 unique cell barcodes +# job finished in 1 seconds at Sun Feb 25 10:49:57 2018 -- 2.25 0.06 0.00 0.00 -- cb0db520-8a4e-4040-aa88-93efc0718fa8