Mercurial > repos > iuc > umi_tools_group
diff umi-tools_group.xml @ 17:428735be9764 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/umi_tools commit bc1b362f6783d3fc0ed0f42c14687001d7ff5f7a
| author | iuc |
|---|---|
| date | Sat, 05 Oct 2024 13:08:51 +0000 |
| parents | 257be15474a7 |
| children |
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--- a/umi-tools_group.xml Sat Sep 28 16:41:21 2024 +0000 +++ b/umi-tools_group.xml Sat Oct 05 13:08:51 2024 +0000 @@ -1,9 +1,9 @@ <tool id="umi_tools_group" name="UMI-tools group" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@"> <description>Extract UMI from fastq files</description> - <expand macro="bio_tools"/> <macros> <import>macros.xml</import> </macros> + <expand macro="bio_tools"/> <expand macro="requirements"> <requirement type="package" version="1.21">samtools</requirement> </expand> @@ -23,7 +23,7 @@ -I '$input_file' -S grouped.bam @ADVANCED_OPTIONS@ @LOG@ - ## TODO using samtools sort is a workaround, for the following error that appears when Galaxy + ## using samtools sort is a workaround, for the following error that appears when Galaxy ## compares the generated file with the one in test-data ## `Converting history BAM to SAM failed: 'samtools returned with error 1: stdout=None, stderr=[main_samview] fail to read the header from "/tmp/tmpd8o61jykdedup_out6.bam".\n'. Will compare BAM files` ## may be dropped in the future @@ -42,8 +42,8 @@ <expand macro="log_input_macro"/> </inputs> <outputs> - <data format="bam" name="output" /> - <data format="tabular" name="group_out"> + <data format="bam" name="output" label="${tool.name} on ${on_string}: Tagged BAM"/> + <data format="tabular" name="group_out" label="${tool.name} on ${on_string}: Read groups"> <filter>group_output</filter> </data> <expand macro="log_output_macro"/>