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view test-data/out_paired.log @ 0:860bc357b678 draft

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planemo upload commit c8e46ecad0b1473097517e582ed6c43eb0635b36
author iuc
date Tue, 29 Aug 2017 17:37:21 -0400
parents
children f73f13641bb6
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# output generated by extract --bc-pattern=NNNXXX --stdin=input_read1.gz --read2-in=input_read2.gz --stdout out1.gz --read2-out=out2.gz --log=/tmp/tmpREDhtd/files/003/dataset_3773.dat
# job started at Tue Aug 29 14:20:44 2017 on gaius -- 5913ff4c-b1d1-4f65-abec-66ca6684bdbd
# pid: 21437, system: Linux 4.10.0-33-generic #37-Ubuntu SMP Fri Aug 11 10:55:28 UTC 2017 x86_64
# blacklist                               : None
# compresslevel                           : 6
# error_correct_cell                      : False
# extract_method                          : string
# filter_cell_barcode                     : None
# filter_cell_barcodes                    : False
# log2stderr                              : False
# loglevel                                : 1
# pattern                                 : NNNXXX
# pattern2                                : None
# prime3                                  : None
# quality_encoding                        : None
# quality_filter_mask                     : None
# quality_filter_threshold                : None
# random_seed                             : None
# read2_in                                : input_read2.gz
# read2_out                               : out2.gz
# read2_stdout                            : False
# reads_subset                            : None
# reconcile                               : False
# short_help                              : None
# stderr                                  : <_io.TextIOWrapper name='<stderr>' mode='w' encoding='UTF-8'>
# stdin                                   : <_io.TextIOWrapper name='input_read1.gz' encoding='ascii'>
# stdlog                                  : <_io.TextIOWrapper name='/tmp/tmpREDhtd/files/003/dataset_3773.dat' mode='a' encoding='UTF-8'>
# stdout                                  : <_io.TextIOWrapper name='out1.gz' encoding='ascii'>
# timeit_file                             : None
# timeit_header                           : None
# timeit_name                             : all
# whitelist                               : None
2017-08-29 14:20:44,451 INFO Starting barcode extraction
2017-08-29 14:20:44,461 INFO Input Reads: 100
2017-08-29 14:20:44,461 INFO Reads output: 100
# job finished in 0 seconds at Tue Aug 29 14:20:44 2017 --  0.73  0.05  0.00  0.00 -- 5913ff4c-b1d1-4f65-abec-66ca6684bdbd