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comparison test-data/test_15_subtree.json @ 0:79e2ee4e6ebb draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/usher commit c1531745ea5f5c4fbd22ad18e290b47fdcb01bb1"
author iuc
date Tue, 11 May 2021 17:54:51 +0000
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-1:000000000000 0:79e2ee4e6ebb
1 {
2 "version":"v2",
3 "meta":{
4 "title":"mutation_annotated_tree",
5 "filters": ["country"],
6 "panels": ["tree"],
7 "colorings": [ {"key":"MAT_Clade_0","title":"MAT_Clade","type":"categorical"},
8 {"key":"MAT_Clade_1","title":"MAT_Clade","type":"categorical"} ],
9 "display_defaults":{"branch_label":"nuc mutations"},"description":"JSON generated by matUtils. If you have metadata you wish to display, you can now drag on a CSV/TSV file and it will be added into this view, [see here](https://docs.nextstrain.org/projects/auspice/en/latest/advanced-functionality/drag-drop-csv-tsv.html) for more info."},
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16376 "node_attrs": { "div": 23, "date": {"value": "20-10-01"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}
16377 }
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16385 "node_attrs": { "div": 25, "date": {"value": "20-11-05"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}
16386 }
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16388 }
16389 ]
16390 }
16391 ]
16392 }
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16402 "children":[ {
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16411 {
16412 "name": "USA/CA-LACPHL-AE00022/2020|MW389622.1|20-07-07",
16413 "branch_attrs": {
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16415 "mutations": { "nuc" : [ "A1005G","T6407A","G20476T" ] }
16416 },
16417 "node_attrs": { "div": 8, "date": {"value": "20-07-07"}, "country": {"value": "USA"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}
16418 }
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16420 }
16421 ]
16422 }
16423 ]
16424 }
16425 ]
16426 }
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16430 "branch_attrs": {
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16432 "mutations": { "nuc" : [ "T241C","G1440A","G2891A" ] }
16433 },
16434 "node_attrs": {
16435 "div":4, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": "B.3"}},
16436 "children":[ {
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16440 "mutations": { "nuc" : [ "C4668T","C21742T","C25931A" ] }
16441 },
16442 "node_attrs": { "div": 7, "date": {"value": "20-03-31"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}
16443 }
16444 ,
16445 {
16446 "name": "England/BRIS-12208F/2020|20-03-21",
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16449 "mutations": { "nuc" : [ "C14585T","C27603T" ] }
16450 },
16451 "node_attrs": { "div": 6, "date": {"value": "20-03-21"}, "country": {"value": "England"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}
16452 }
16453 ,
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16456 "branch_attrs": {
16457 "labels": { "nuc mutations": "G28851T" },
16458 "mutations": { "nuc" : [ "G28851T" ] }
16459 },
16460 "node_attrs": {
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16462 "children":[ {
16463 "name": "Wales/PHWC-31CB7/2020|20-04-14",
16464 "branch_attrs": {
16465 "labels": { "nuc mutations": "C9180T,C16466T,G19670A" },
16466 "mutations": { "nuc" : [ "C9180T","C16466T","G19670A" ] }
16467 },
16468 "node_attrs": { "div": 8, "date": {"value": "20-04-14"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}
16469 }
16470 ,
16471 {
16472 "name": "Wales/PHWC-26D2B/2020|20-03-30",
16473 "branch_attrs": {
16474 "labels": { "nuc mutations": "C5183T,G18651T" },
16475 "mutations": { "nuc" : [ "C5183T","G18651T" ] }
16476 },
16477 "node_attrs": { "div": 7, "date": {"value": "20-03-30"}, "country": {"value": "Wales"}, "MAT_Clade_0": {"value": ""}, "MAT_Clade_1": {"value": ""}}
16478 }
16479 ]
16480 }
16481 ]
16482 }
16483 ]
16484 }
16485 ]
16486 }
16487 }