Mercurial > repos > iuc > usher_matutils
diff test-data/test_17_all_paths.txt @ 3:39ce7344cd1e draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/usher commit d44fdcd836306a2096d50bebb28d8faacdb0fbfd
| author | iuc |
|---|---|
| date | Mon, 02 Feb 2026 14:39:11 +0000 |
| parents | 79e2ee4e6ebb |
| children |
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--- a/test-data/test_17_all_paths.txt Sun Mar 17 18:10:36 2024 +0000 +++ b/test-data/test_17_all_paths.txt Mon Feb 02 14:39:11 2026 +0000 @@ -1,1935 +1,1935 @@ -1 -2 C24034T -England/BRIS-1853249/2020|20-04-02 C29518T -NPL/61-TW/2020|MT072688.1|20-01-13 -3 C875T -Wales/PHWC-25B04/2020|20-03-24 A20637G -Wales/LIVE-A6831/2020|20-03-16 T14859C -4 C7423T -Scotland/EDB1317/2020|20-04-09 G4207A,T7423C -Scotland/EDB354/2020|20-03-30 A29780C -5 C20270T -England/SHEF-BFF8B/2020|20-03-25 C1473T -6 A29683T -7 A18671G -England/LCST-24D7202/2020|20-06-22 C4021T,A9963T,T24027C -England/SHEF-BFF21/2020|20-03-25 -England/LIVE-A4C46/2020|20-03-12 G431A,G26754A,C28725T -8 T4949C -England/SHEF-BFFC7/2020|20-03-25 G28027T -England/PHEC-1E01E/2020|20-04-03 C22445T -9 C29635T -DP0476/2020|LC571003.1|20-02-16 C29592T -DP0191/2020|LC570980.1|20-02-15 A3854G -10 C14805T,G26144T -11 T17247C -12 C12400T -Switzerland/100159/2020|LR884273.1|20-03-16 C16995T -England/LOND-126031F/2020|20-03-15 A20511G 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A4236G,T25655C -USA/WA-S885/2020|MT642386.1|20-04-22 G7739T,C25904T -USA/UT-QDX-1870/2020|MW190618.1|20-03-16 A5269G,C9943T -22 G5572T -USA/WA3-UW1/2020|MT163716.1|20-02-27 T2446C,C3411T -SouthKorea/KOR-BA-ACH_2719/2020|MT304476.1|20-02-29 C28311T -23 G13627T,C15540T,A28338G -England/BRIS-1265AA/2020|20-04-10 T9046C,C11779A,C27688T -AUS/NT38/2020|MT641726.1|20 G1599T,C3096T,C12781T,G17944T -24 A10982G -England/LIVE-A5D06/2020|20-03-17 C6681T,G11801A -England/LIVE-A065B/2020|20-05-27 C823T,C8752T,A9741C,C19961T,C26333T,C26408T -25 C241T -26 C14408T -France/40002VJ/2020|MT470179.1|20-03 C2416T,G12079C,C23220A -27 A23403G -Wales/PHWC-310CA/2020|20-04-11 A2480G,A12529G,T14408C,G26144T -28 C3037T -29 G7042T,G8861T -England/BRIS-123965/2020|20-04-07 C5806T,C10450T -England/BRIS-125347/2020|20-03-27 -30 C4809T -IND/Isolate_9088/2020|MW555597.1|20-06-30 G14245A,G28325A -IND/763/2020|MT577009.1|20 -31 G25429T -32 C16289T -England/CAMB-76515/2020|20-03-29 T25429G -England/CAMB-1AE294/2020|20-04-27 T4587A,G12833A,C15824T -33 C13730T -England/LEED-2A8D10/2020|20-03-31 C25916T -England/CAMB-1AC6F4/2020|20-04-21 C6558T,G9130T,G26529T -34 C25916T -35 A10874G,T26677C -36 G25440A,G29745T -Scotland/EDB2049/2020|20-04-18 T25916C -Scotland/EDB2100/2020|20-04-19 -England/CAMB-1AC7D3/2020|20-04-22 A13863G -England/CAMB-7EBDF/2020|20-04-07 A13433G,C18377T -37 C1288T,G5230T,G10705T,C10747T,G25996A,C28854T,C29284T -England/MILK-BB0F16/2020|20-11-17 G7675T,C12406T -England/CAMC-BBDD4C/2020|20-11-22 C2939T,C5934T,C21635T,T27988C,C28775T -38 G17278T,C19610T,T26906C,G29688T,G29757T -Scotland/CVR2381/2020|20-04-13 C1848T -Scotland/CVR2197/2020|20-04-11 G21776T -39 A28841G -Scotland/CVR3417/2020|20-05-07 G3689A,T11660A,C29743T -Scotland/CVR1519/2020|20-04-03 A6441G -40 G1141T -England/MILK-93B73B/2020|20-06-21 C3817T,C25160T,C28099T -England/MILK-9589F6/2020|20-06-15 C7488T,C14396T -41 C28045T -England/BRIS-128441/2020|20-04-16 G10324T,C22713T -England/CAMB-7C39D/2020|20-04-13 G2885T,G26458C,C29253T -42 C3602T,A24232G -England/NORW-E8C37/2020|20-04-13 C11460T -England/NORW-E75A6/2020|20-05-04 T3602C,C6538T,T21206G -43 G1589A,G29474T -Wales/PHWC-3122E/2020|20-04-10 A22457G -Wales/PHWC-1645EC/2020|20-05-10 A11438G -44 G21538T -England/ALDP-50085E/2020|20-06-27 T11164G,G15406T,G22332A,G27583T,G29427T -England/PHEC-127E8/2020|20-03-28 -45 G28514T -England/CAMB-75BD8/2020|20-03-29 C18060T -UnitedKingdom/NORW-EB4F0/2020|LR822001.1|20-05-01 T4579A,C5175T,T18552C,C25521T,G27877T -46 G1914A,T16456C -England/ALDP-9ED9F6/2020|20-05-05 C10681T,G16855T,C26060T,C29614T -England/ALDP-944BD9/2020|20-06-07 G4399T,G27746T -47 C25665T,G28325T -USA/MI-MDHHS-SC20612/2020|MT585039.1|20-04-29 C15540T -USA/MI-MDHHS-SC20597/2020|MT585043.1|20-04-29 G16075T -48 C3487T,C11308T,T15264C,C16332T,C19170T,C25791T,C28854T,C29614T -USA/WA-S3017/2020|MW474188.1|20-08-15 G4508A,T7884C,C21811T -USA/WA-S2852/2020|MW079820.1|20-09-01 C17795T,G26230T -49 G3871T 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-England/LEED-2A91D7/2020|20-04-06 T1778C,C6762T,C28849T -England/LEED-2A87C7/2020|20-04-03 G3230A -EGY/CUNCI-HGC5I033/2020|MT614347.1|20-06-02 C1997T -61 C1059T -62 C24381T -USA/CA-CZB-1434/2020|MT628140.1|20-03-25 -USA/UT-UPHL-201016311/2020|MW181497.1|20-04-09 C23718T -63 C24442T -USA/VA-DCLS-0676/2020|MT911804.1|20-04 -USA/MI-QDX-476/2020|MW064508.1|20-03-23 -64 A13512T,G13513T,G13514A -USA/WA-UW-4105/2020|MT358746.1|20-03-31 T1333A,T1334A -USA/WA-UW-2220/2020|MT345839.1|20-03-23 T1059C,C15763T,T25563G -65 G1298A -USA/FL-BPHL-1565/2020|MW056116.1|20-09-10 G12694A,C17639T,A18529G,A20742T,C21637T,C27752T,G29628T -USA/FL-BPHL-0510/2020|MT834668.1|20-06-10 C344T,C5090T,C10228T,A22001G -66 T20037C -USA/MI-MDHHS-SC20574/2020|MT585034.1|20-04-29 G2900T,C23179T -USA/MI-MDHHS-SC20587/2020|MT585026.1|20-04-29 G28073T -67 T1059C,C1594T,C11109T -England/CAMB-7A7DF/2020|20-04-02 G8578A -Netherlands/NA_18/2020|LR878352.1|20-03-09 C23506T -68 C18555T,C28892T -USA/VA-DCLS-1557/2020|MW208010.1|20-08 C25207T -USA/FL-BPHL-1018/2020|MT966219.1|20-07-17 A6035G -69 C2668T -USA/CA-CZB-11119/2020|MW276517.1|20-05-29 C1912T,G2867T,C12651T -USA/CA-CZB-11132/2020|MW276510.1|20-05-23 T18240C,T28009C -70 G24368T -71 C10376T,G18583T,G29773T -Wales/PHWC-340A9/2020|20-04-20 G7675T,G18318T,T21745C,C27610T -Wales/PHWC-1667A8/2020|20-05-26 C2065T,G4207T,T9485C,T10376C,A21515G,G23868T,G27390C -72 A3103C,C5893T,A28117T -England/CAMB-83FBD/2020|20-04-22 -England/CAMB-1AD004/2020|20-04-30 A28356G -73 A10323G -74 T15276A,G28842T -USA/FL-BPHL-1022/2020|MT966234.1|20-07-20 G11417T,A15276T,G20679T,T21291C -USA/FL-CDC-LC0001066/2020|MW634501.1|20-12-26 G1882T,C5178T,T9694C,C13923T,G15543T,A19080G,A27778G,G28321T,G29511T -75 G174T,G5230T,A21801C,G22813T,G23012A,A23063T,C23664T,C25904T,C26456T,C28887T -England/PHEC-14F5D8/2020|20-12-29 C6525T,G13122A,A15657G,C21801A,G22205C,T23905A,T25171C,G27516A,G27933A -76 A22206G -77 A2692T,C21614T,C26645T -Scotland/EDB11343/2020|20-12-26 G9049T,C20405T,A25806G -Scotland/EDB11342/2020|20-12-26 A4459G,A18846G -England/QEUH-CAF17D/2020|20-12-15 C9142T,C19524T -78 C683T,T10249C,G17427T,C25546T,G25970T,G25971A,C28854T -England/LIVE-DAB556/2020|20-10-18 G174T,T683C,C10249T,T17427G,T25970G,A25971G,T28854C -England/PHEC-14DE93/2020|20-11-11 G204T,C6286T,C21614T,C22227T,T26424C -79 G24368T,C24621T -Wales/PHWC-1658A6/2020|20-05-19 G2830A,A2903G,C7869T -Wales/PHWC-2E0A2/2020|20-04-10 C18568T -80 C18744T,A18978G,A29391G -England/ALDP-952A53/2020|20-06-13 C1190T,G25273T,C29249T -England/ALDP-95A745/2020|20-06-13 G11708A,C14724T,C17550T -81 C4999T,C13730T -Scotland/EDB3137/2020|20-04-06 G25494T,C29719T -Scotland/EDB2810/2020|20-03-30 C19113T,T21752C -82 A2018G,C18029T -USA/CA-QDX-434/2020|MW064457.1|20-03-20 C8697T,T18029C -USA/UT-02231/2020|MT444626.1|20-04-15 C2445T,G20890A,G25947T,G28373T,G28374T -83 C2939T,C3736T,G7037A,C7732T,C25517T,C26110T,C28310T -USA/WA-S2850/2020|MW079819.1|20-09-01 A4935G,T26510C,G29736T,C29762G -USA/WA-S2746/2020|MT947577.1|20-07-19 -84 G19542T,C23551T,C28821A -USA/WI-UW-879/2020|MT846567.1|20-07-14 G3403T,G13201T,C26527T -USA/UT-05590/2020|MW084605.1|20-06-01 A2151G -85 G18281A,A20755C,G25784T -Netherlands/NA_588/2020|LR883860.1|20 A20742G -Netherlands/NA_583/2020|LR883819.1|20 C4113T,C6555T,C25731T -86 C11916T -87 G1990T,C2939T,A5264G,C16457T -USA/WA-S2992/2020|MW474166.1|20-08-12 G521T,T847C,A2166G,C5221T,C6582T,G11521T,C22712T,C26010T,G26262A -USA/CA-CZB-5698/2020|MW276260.1|20-07-23 G596A,G1820A,G9526T,C14183T,C28344T -88 G28376T -USA/GA-CDC-4459/2020|MW130876.1|20-09-11 T241A,C10039T,A12916T,C17733T,G18520A,T23431C,G26828A,A27224G,G27915A,C29077T -USA/NY-QDX-1993/2020|MW190794.1|20-03-18 -89 G26020T -USA/FL-BPHL-0321/2020|MT757040.1|20-04-16 T29128C -USA/FL-BPHL-1841/2020|MW206510.1|20-04-08 C4012T -90 G1186A,T4033C,C8986T,C25413T,C28674T,G28857T -USA/MN-MDH-1583/2020|MT997701.1|20-05-28 C8109T -USA/MN-MDH-1585/2020|MT997703.1|20-05-22 T12925C -91 C18998T,G29540A -92 A20553G -USA/COVID20-0777/2020|MW002812.1|20-06-26 G4285A,G6421C,C16173T -USA/VA-DCLS-1147/2020|MT992749.1|20-04 G22487C -93 G25947C -USA/VA-DCLS-1512/2020|MW197472.1|20-07 G526T,T6949C,C29366T,C29750T -USA/CA-CZB-1275/2020|MT533209.1|20-04-16 C23685T,G27703T -94 C28863T -USA/NY-QDX-2365/2020|MW191144.1|20-03-16 -ARG/Cordoba-891/2020|MW633900.1|20-09-14 A642G,A2647G,C7279T,C7528T,C9803T,C10450T,C29445T,C29555T -95 C19145T -USA/CA-CZB-5668/2020|MW276489.1|20-08-08 G4285T,T5059C,C16230T,C23525T,G25471T -USA/CA-CZB-2139/2020|MT750510.1|20-05-21 C5540A -96 T13914C -USA/FL-BPHL-1324/2020|MW023523.1|20-07-14 C4276T,G7936T,C14928T,C15960T,C19186T,T20838C,C23536T,C23595T -USA/FL-BPHL-1988/2020|MW286761.1|20-04-18 G3638A,C16217T -97 C10458T,G26828T -USA/NC-QDX-174/2020|MT786825.1|20-04-27 C18693A -USA/1453xE2/2020|MW521402.1|20-07-05 G7042T,C11396A,C21855T,G28655T -98 A9984C,G25445T -USA/UT-UPHL-2012905638/2020|MW420809.1|20-08-10 A9935G,T16632C,C19185T,C28824T,G29628T -USA/WA-S2867/2020|MW173410.1|20-09-20 G9278A,G11693T,C14937T,C21017T,C21219T -99 C66A,C4455T,C7768T,A8773G,C17304T,T24805C,C26270T -England/MILK-6166F0/2020|20-07-05 T22912G -England/ALDP-9BCA93/2020|20-09-09 C782T,G1210T,C28045T -100 G26217T -ISR/hCov-19-Israel-CVL-n-9434/2020|MW674838.1|20-04-19 C21731T,G29645T -England/CAMC-947D3A/2020|20-07-17 G105T,T10288C,C13821T,C26625T,A29752T -101 C715T,A23586G -USA/WI-UW-1126/2020|MT929103.1|20-08-13 G487A,C4876T,A5877G,C18555T,A27489G,C28045T -USA/WI-UW-1071/2020|MT929023.1|20-07-29 G1957T,C2623T,C13115T,G22026T -102 C13252T -USA/VA-DCLS-0481/2020|MT951936.1|20-05 C799T,C6701T,C23604T -USA/SEARCH-0792-SAN/2020|MT811373.1|20-04-06 -103 C16650T,A20675T,G29179T,G29779T -KOR/YS006/2020|MW345824.1|20-06-04 C26261T -KOR/YS008/2020|MW345825.1|20-06-07 -104 G28027T,G29742T -USA/OR-QDX-3447/2020|MW521776.1|20-08-11 C12754T,A14012T,G14250T,C22687T -USA/WA-S1037/2020|MT642186.1|20-05-03 A18671C,C25466T -105 G1738T,C11916T,C28087T -USA/FL-BPHL-1680/2020|MW166145.1|20-08-11 G3242A,T11449C,T14508C,A26126T,T28087C -USA/FL-BPHL-1350/2020|MW023549.1|20-07-15 G9928T,A20716G,A24383G,G25538T,G28123T -106 A12820G,C16762T,A17637G,C20762T,C28887T -USA/NMDOH-2020305755/2020|MW070069.1|20-08-21 C676T,A3536G,C29370G -USA/NMDOH-2020308468/2020|MW228235.1|20-08-24 -107 C379A -USA/CA-CZB-1517/2020|MT628191.1|20-05-13 C10369T,C12115T,G12202T -USA/CA-CZB-1793/2020|MT750334.1|20-04-16 A20503G -108 C27964T -USA/WA-UW-2108/2020|MT345811.1|20-03-24 G3259T,T27964C -USA/MN-MDH-1434/2020|MT893000.1|20-03-31 G14580A,T19527C,A19821G,G22346T,C28099T,C29722T -109 C10319T,A18424G,C21304T,G25907T,C28472T,C28869T -USA/AK-PHL660/2020|MW173157.1|20-06-27 A16872C -110 G9928T -USA/WI-UW-1194/2020|MT981478.1|20-08-11 C10377T -USA/CA-CZB-3284/2020|MW134086.1|20-07-17 A16148G,C16928T,G29422T -111 T833C -112 A22320G -USA/UT-UPHL-2009700/2020|MW206352.1|20-07-26 C3411T,G8114A,C11095T,G15908A -USA/UT-UPHL-2012905899/2020|MW420810.1|20-08-08 G2525A,C2788T,G6443A,C6539T,C6690T,C10440T,G15451T,C18463T -113 G9705T -USA/UT-05592/2020|MW054143.1|20-06-01 A3121C,G23009T,G27637A,C29743T -USA/UT-UPHL-201003477/2020|MW190173.1|20-06-19 C8389T,T19839C,G25523T,T29685G -114 C28833T -USA/MN-QDX-981/2020|MW065078.1|20-03-15 -USA/MD-MDH-0164/2020|MT937827.1|20-07-15 C3817T,A23813G -115 C9967T -USA/VA-DCLS-1006/2020|MT952676.1|20-06 T18641C,C23208T,G25793T,C27807G -USA/CA-QDX-2685/2020|MW191430.1|20-03-17 G17590T -116 G10902A -USA/FL-BPHL-0876/2020|MT890355.1|20-07-09 C7173T,G11596T,C13994T,C25546T -USA/TX-DSHS-0347/2020|MW114984.1|20-06-13 G2659T,C3622T,G7936T,T9379A,A12148G,C18687T -117 G17808T -USA/MN-QDX-1328/2020|MW065415.1|20-03-15 C9693T -USA/TX-DSHS-1210/2020|MW246004.1|20-03-18 C15352T -118 C24378T -USA/UT-00495/2020|MT444543.1|20-04-02 G27717A -USA/UT-00353/2020|MT444564.1|20-03-27 T11131A -119 C4878T,A22525G,C29272T,G29449T -USA/UT-02970/2020|MW053933.1|20-05-01 A22681C,G28202A 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A23534T -USA/WA-S1266/2020|MT821676.1|20-05-13 T4441C,G6125A,C17639T -127 C1917T -USA/VA-DCLS-0426/2020|MT679166.1|20-05 C8327T -USA/VA-DCLS-0187/2020|MT450889.1|20-04 G29431T -128 C23191T -USA/UT-QDX-2224/2020|MW191025.1|20-03-13 A25910C -USA/TX-DSHS-0313/2020|MW115058.1|20-06-13 C9907T,C17125T,T18144C -129 G15906T -USA/FL-QDX-1620/2020|MW190373.1|20-03-16 C5548T,C28153T -USA/FL-BPHL-0109/2020|MT872200.1|20-04-30 T5260A,C7169T,G13604C,C13876T,A16085G,C19273T,A28081T,C28754T -130 C10582T -131 C1076T -Scotland/EDB3598/2020|20-04-27 G22244T,C26461T -Scotland/EDB2451/2020|20-04-23 T10963A -132 C3099T,G4960T,C4965T,C6070T,C7303T,C7564T,C10279T,C10301A,C10525T,G10688T,G11851T,C14230A,G21800T,G27632T,C27804T,C28830A,G29402T,G29779T -England/MILK-9934B2/2020|20-08-26 C9246T,C11747T,C13378T,G19056T,C28744T -Switzerland/240029/2020|LR880608.1|20-08-10 T27622C -133 C28887T -134 C1302T,C1519T,A2526G,T3049C,G3689A,A11061G,C11747T,T13345C,A14774G,C15026T,G15438T,T16062C,G17334T,G17721T,G19962T,C25037T,C27945T -England/RAND-12B3F28/2021|21-02-09 -England/RAND-12B3CF4/2021|21-02-09 -135 G17014T,G21600T,G22018T,T22917G,C26681T,A28272T,C29362T -136 G9738C,G13713A,C16394T -USA/CA-QDX-2817/2020|MW460624.1|20-12-26 A9492C,C21638T,C25919T -USA/CA-QDX-2803/2020|MW460610.1|20-12-26 C11345T,C13860T -137 C2395T,T2597C,A12878G,T24349C,G27890T -USA/CA-QDX-3684/2021|MW545275.1|21-01-08 T2395C,G2516T,A3712G,A5780G,A5999G,C7528T,A10323G,C11866T,C13378T,G15452T,T17014G,C19164T,A20268G,T21600G,G21974T,G22917T,T26681C,T27890G,T29362C -USA/CA-LACPHL-AE00058/2020|MW433754.1|20-07-13 A1194G,A2406G,A5780G,G15452T,T17014G,A20268G,G22917T -138 C8947T,C12100T -USA/CA-LACPHL-AF00169/2021|MW485829.1|21-01-08 C1380T,C6539T,T7813C,A10417G,A19476G,C21638T,G22708T,G28628T,T29362C -USA/CA-LACPHL-AF00029/2020|MW424876.1|20-12-20 C1601T,C4918T -139 T1171C,A5747G,C10789T,G17259T,G24007A -USA/OH-UHTL-3/2020|MW585340.1|20-01-05 C10228T,C13335T,T14408C,C25611T,G29705T -USA/UT-UPHL-2012522014/2020|MW419981.1|20-12-18 C1437T,G3231T,C6385A,C14805T,C21431T,C25844T,A26664G -140 C6843T,T11764C,G29402T -USA/MA-MGH-02814/2020|MW454549.1|20-09-24 T21294C,G28936A,A29115T -USA/MA-MGH-03386/2020|MW454697.1|20-11-09 C13176T,T17040C,C24106T -141 C28893T -USA/TX-DSHS-0780/2020|MW147526.1|20-05-21 G22021A,C22998T,G23501T -USA/MN-MDH-1557/2020|MT958254.1|20-08-03 T83C,C583T,G2468A,C17410T,A23998G,C25553T,T27856C,G29543T -142 T9070C -USA/MN-MDH-1596/2020|MT997714.1|20-05-12 C20325T -USA/CA-CZB0731/2020|MT385450.1|20-03-31 G9049T,T10960C -143 C25688T -144 C4320T -England/MILK-958598/2020|20-06-09 C5175T,A15283G,G16861T,C20844T,T27539C -England/ALDP-4F4092/2020|20-06-24 C1627T,C11494T,C14076T,T18309C,G20670A,C29529T -145 T13006C -England/LIVE-A91F7/2020|20-03-25 C19186T -England/CAMB-1AE865/2020|20-04-30 C1437T,A24070T,C26013T,C27945T -146 G3892T -USA/MA_MGH_00458/2020|MT520347.1|20-04-04 G26787A -USA/MA_MGH_00445/2020|MT520273.1|20-04-01 G20062T -147 C2536T,C10376T,C14931T,C24082T,C27005T,A28880G -USA/FL-BPHL-1724/2020|MW206414.1|20-10-01 G2272A,C7267T,G21193T -USA/FL-BPHL-1147/2020|MT956757.1|20-08-18 A5368G,C14220T,G21193T,C29363T -148 C16260T,C28821A -USA/CA-CZB-3886/2020|MW134282.1|20-07-21 C5979T,A9337G,C18695T -USA/IL-UW-385/2020|MT772536.1|20-05-23 C12525T,G21604T,C25728T,G28378T -149 C20555T,C21772T -USA/NMDOH-2020135004/2020|MW006582.1|20-06-18 A6414G,A22101T,G24872T -USA/NMDOH-2020126568/2020|MW006567.1|20-06-15 C16428T -150 G25523T,T27869C -USA/MN-MDH-1464/2020|MT919997.1|20-03-24 C3044T -USA/WA-UW-2008/2020|MT326031.1|20-03-24 G4975T,T29194C -151 T20049C,C21627A,C23655T -USA/UT-UPHL-201016722/2020|MW181503.1|20-05-29 C11102T,A12174G -USA/UT-03041/2020|MW053962.1|20-05-01 C22295T,C22323T -152 C66T,C17069T,C26801T -USA/MD-MDH-0129/2020|MT937319.1|20-07-08 C13761T -USA/TX-DSHS-1524/2020|MW349179.1|20-06-23 A26864T -153 C26625T 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A964G,C2433T,C3602T,C19572T,G22112A,A24894C,G27583T,G29024T,C29095T -168 G29291A -England/OXON-B15A5/2020|20-04-29 C6627T,A11740T,G18984T,C24023T -England/BRIS-129D72/2020|20-04-15 C1593T,C10440T -169 A27821G -USA/MN-MDH-1616/2020|MT997734.1|20-04-24 C2878T,G3146A -USA/MN-CDC-6364/2020|MT967959.1|20-05-21 G7405T,G11113A,C12225T,G25437T,C25516T -170 G2286A,A4197G,G7954T,A10552G,A28715T -USA/VA-DCLS-1282/2020|MW067700.1|20-08 C619T,A2286G,C2523T,G12892T,C13335T,C23053T,C23683T,C27845T -USA/COVID20-1144/2020|MW067817.1|20-07-10 T25577G -171 C823T,A2466G,C4084T,C6196T,G10753A,G11365A,C17145T,G27955A,C28854T -USA/UT-UPHL-201023823/2020|MW181538.1|20-06-01 G26730T -USA/UT-UPHL-2012322580/2020|MW424914.1|20-06-19 C5140T,G29290A -172 C1887T -USA/CA-QDX-2032/2020|MW190749.1|20-03-17 G533A -USA/CA-QDX-2576/2020|MW191310.1|20-03-16 A27979T -173 C829T,G28371T -Wales/PHWC-1662B6/2020|20-06-13 G419A,G2281A,G3994A,C10956T,G11670A,C18508T,G27415A -Wales/PHWC-26B12/2020|20-03-29 -174 C10851T 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C9491T,C12754T,G15100T,C15154T,C20970T,C28657T -USA/UT-UPHL-201232337/2020|MW375991.1|20-07-31 C775T,C2488T -181 G20709T -Northern_Ireland/NIRE-1021DD/2020|20-03-14 A6360G -USA/CA-CZB-2429/2020|MW036038.1|20-05-21 C4002T,G17338T,A21080C,G22104T -182 G3231T,A12850G,C21364T,A23064C,C28890T -USA/NJ-CDC-2-3769299/2020|MW550616.1|20-12-30 T16752G,C23064A -USA/MA-MGH-03346/2020|MW454682.1|20-11-05 C823T,A9397G,A23362T,G26654T,G29140A -183 G18213T,A18818G -Scotland/EDB6146/2020|20-05-14 T7814C,C11339T,A21137G -Scotland/EDB6052/2020|20-05-08 -184 C9286T,G28899C -England/CAMB-7FBCF/2020|20-04-16 A12556G -England/CAMB-784BC/2020|20-04-06 A13852G -185 C25731T,C29625T -England/PHEC-15A73/2020|20-03-29 C7735T,C11757T,C18501T -USA/CA-QDX-796/2020|MW064788.1|20-03-23 C16329T,C23536T,G27906T -186 C6406T,G18972A -B90|LR898037.1|? A21360C -O9|LR963074.1|? A1925C,C5796T -187 A24129G -USA/TX-DSHS-1331/2020|MW322992.1|20-04-01 G1325T,A6351C,C12741T -USA/WI-UW-738/2020|MT772509.1|20-06-30 T3049C,G4972A -188 C66T,A538G,T9107C -USA/TX-DSHS-0596/2020|MW075691.1|20-06-03 T4324G,C23029T,T26543A,A28254G -USA/TX-DSHS-0971/2020|MW217406.1|20-06-15 G23426C,A26070G -189 T4888A,G28727T -USA/CO-CDPHE-2005080166/2020|MW645991.1|20-05-07 T5674C,C8290T -USA/WY-WYPHL-20015627/2020|MW039450.1|20-05-18 C466T,A17691G -190 G7295T -ISR/hCov-19-Israel-CVL-n3304/2020|MW672627.1|20-03-09 C28290T -England/CAMC-946515/2020|20-07-15 C4455T,C12784T,G21809A,T22150C,G23678T,G25523T,C27297T,G28001T,G28346T,G28917T,C29247T -191 C2416T -192 G26233T,C27881T -USA/FL-BPHL-1462/2020|MW040672.1|20-04-20 -USA/FL-BPHL-1813/2020|MW206463.1|20-04-03 A16766G,T28250G,G28681A -193 G8371T -194 C2937T -BHR/600023154_S29/2020|MW237743.1|20-10-14 G1550A,G2494A,G7320A,G20247T,C23893T,C26645T,T27499C,T28120C,A28959G -BHR/920262933_S19_L001/2020|MW228054.1|20-06-19 C21310A -195 C22477T -196 C882T,C17746T,G19962T,G28907T -England/ALDP-955F15/2020|20-06-08 G25793A -England/MILK-9A6856/2020|20-08-31 T2533C,T3873G,A8031G,G23126T,C26340T -197 C3811T,G22225A -England/ALDP-94EB75/2020|20-06-17 -England/ALDP-6E2806/2020|20-07-01 T16456G,C27769G -198 C9430T,A15477T,C18395T,A20622T,G20623T,A20624T,C23730T,A26319G,C28854T,G29044A -Scotland/QEUH-969725/2020|20-08-14 C2135T,G23856T -England/QEUH-AD1648/2020|20-10-26 C1514T,T6141A,C11490T,G13397T,C27577T -199 T15366C -USA/WI-UW-249/2020|MT706376.1|20-03-16 C8016T,G28903T -USA/WI-UW-84/2020|MT706205.1|20-03-24 C18481T,G25687A,C29296T -200 C10712T -USA/VA-DCLS-0593/2020|MT951960.1|20-03 T25304C,C28890T -USA/TX-CDC-3009/2020|MT512440.1|20-03-10 T9708C -201 C16616T,C26885T,C27603T,C28887T -USA/FL-BPHL-1673/2020|MW166138.1|20-07-06 C7267T,A25201G,C29719T,C29774T -USA/MD-MDH-0286/2020|MW240750.1|20-10-13 A7209G,C8950T,T17262C,T22645C,T29010C -202 C14786T,G20578T -England/PHEC-1C872/2020|20-04-16 C2453T,C11102T -England/BRIS-130015/2020|20-04-11 C6361T -203 A716G -USA/UT-04888/2020|MW084559.1|20-05-26 G4960T,G21604T -USA/UT-04282/2020|MW084509.1|20-05-14 C10456T,G19816T,G25494T -204 G10631T -USA/MA_MGH_00136/2020|MT520439.1|20-03-25 -USA/MA_MGH_00486/2020|MT520279.1|20-03-27 G8131T -205 C19884T -Wales/PHWC-15DFD9/2020|20-05-14 G3969A,G14785A,C14786T,C17000T,G18960T,C28657T,C29614T -Wales/PHWC-2AF12/2020|20-04-06 C26447A -206 C875T,A10904G,G25249T,C28854T -England/CAMC-B533A0/2020|20-11-08 C1191A,T6989C,C14230T,A18366G,C20429T,A22842T,G25785T,T27328C -England/MILK-9781E9/2020|20-07-29 C1150T,C6525T,C13274T,C18555T,G19962C,C24378T -207 C539T,C5884T,C7834T,G8618A,C14322T,C15579T,G16912T,C23604A,G23948T,C25207T,T26038C,C26600T,C27970A,C28887T -321398|LR962930.1|20-10-13 C22208T -England/QEUH-B8053B/2020|20-11-14 G22225T -208 C6401T,C13458T,C20946T -IHUCOVID-0441|LR794655.1|? T2578C,C13105T -IHUCOVID-0428|LR794641.1|? T10480C -209 T2300C,G5425T,C10594T,C10755T,C14120T,C14407T,G16647T,A19674G,A20396G,C21811T,C25544T,C28770T,C28869T,A29143G -USA/WA-S4490/2021|MW648014.1|21-01-21 T17607C,G20396A -USA/WA-S3458/2020|MW494078.1|20-12-07 C3535T -210 T17838C,G26450T -hCoV-19_Switzerland_206-7951-BE_2020_isolate|LR963255.1|? -Switzerland/100363/2020|LR884411.1|20-03-20 -211 C18877T -USA/FL-BPHL-0401/2020|MT757087.1|20-05-14 T18877C,C25904T -USA/CA-CZB-14951/2020|MW565126.1|20-06-06 T1683C,C22224T,C28367T -212 C26735T -213 C882T,C6990T -England/CAMC-A3E658/2020|20-10-05 T3499C,C7279T,C7749T,C12513T,A14109G,C17156T,T20362C,C25710T,C26060T,T27216A,G28968T -England/MILK-A47DDF/2020|20-10-05 T511C,C7081T,C9907T,C12473T,T14610C,G20578T,G22801T,G28083T,C28887T,G28936T,G29742T -214 G24197T -215 C21614T -England/MILK-5642D2/2020|20-06-10 T1834C,C11783A,C25413T -England/CAMB-1B3593/2020|20-05-26 A5829G,C6651T,C8326T,A11730G,T25732G -216 T241C,A8821G,C15752T,T26066C -England/SHEF-CDD62/2020|20-05-27 C25665T,T28098C,G29254T -England/SHEF-10B22B9/2020|20-04-20 G3482A -217 G1659T,C3884T,C20199T,C26139T,T27634C,G28975T -England/LOND-DC4E3/2020|20-11-04 A11923G,G19009T,C20233T,T21976C,C26645T -England/MILK-99D3AC/2020|20-08-31 G6446T,C9811T,C21234A,C22713T,C29580T -218 G28851T -IND/GBRC-366a/2020|MT951170.1|20-06-18 C26058T -IND/GBRC-392b/2020|MT954593.1|20-07-06 C4048T,T4660C,C4890T,T8634C,G15906T,G28307A,G28975T -219 G5206T,C26885T,G28875T -Switzerland/310517/2020|LR898824.1|20-10-08 G370T,A8993G,C14763T,G25690A,C29370T -England/MILK-9AB1A1/2020|20-08-31 G5629T,C6636T,G9928T,G20275T,C20544A,G20940T,C25553T,C27431T,G28321T -220 C22444T -SAU/596/2020|MT755893.1|20-02-18 A23503G -BHR/920265546_S18_L001/2020|MW228055.1|20-06-21 G11417T,G28960T -221 C593T,T3118C,T10200C,A12547G,C21772T,C28854T -Scotland/QEUH-A9E7BD/2020|20-10-20 A3120C -Scotland/EDB7778/2020|20-09-16 C28045T -222 T181C,C8664T,C12525T,C15120T,G28975T -England/ALDP-B75065/2020|20-11-12 G3080A,C3587T,C8655T,C18555T,G22205C,G22487C,G27281T,G27420A,C28214A -Scotland/QEUH-AD4AFE/2020|20-10-27 A3180G,C9430T,A12130G,G15193T,T20982C,C25904T,C26571T,G27165T,G28280T -223 C22444T,C28854T -SAU/578/2020|MT755891.1|20-02-17 C27527T,C29421T -Scotland/EDB6640/2020|20-05-28 T838C,G1729A,C1973T,C2919T,C23191T,T23605C -224 T1947C -225 G2659T,G5008T,G19549T,G22918T,C25349A,G25947C,G26062T -England/CAMC-A65DDB/2020|20-10-11 T22918G -England/CAMC-AAF5A0/2020|20-10-22 C4672T,C8605T,C11003T -226 T7292C,T8410C,C10833T,C11572T,C16293T,T23986C -England/MILK-A192C8/2020|20-10-01 A538G,A1098C,C2910T,G9092A -England/QEUH-9F3FDD/2020|20-09-24 -227 C7528T,C29555T -England/MILK-ABBF2B/2020|20-10-22 C10474T,C13536T -England/QEUH-96A85E/2020|20-08-14 T23986C -228 G922A,G3431T,T5653C,G5950A,C7504T,T24175C,C26060T -HongKong/Homo-sapiens/HKG/Case5132/2020|MW181761.1|20-10-06 C14724T -HongKong/Homo-sapiens/HKG/Case5126/2020|MW181753.1|20-10-06 A6391G -229 C2836T,G21724T -230 C1122T,T2836C,T4057C,G6077T,A10323G,G13858T,C27092T,C27434T,G28975T -England/PHEC-149F0D/2020|20-11-19 -England/MILK-BE717A/2020|20-11-29 C11003T,C26404T,G26754A -231 G61T,C913T,C1541T,C11259T,C25000T,G26144A,G26849T,C29358T -CAN/COVID_CRCHUM_Pre_Freeze_6/2020|MW309430.1|20-09-04 C9745T,C10440T -Scotland/QEUH-BEAF22/2020|20-12-04 G4105T,C4754T,C5730T,C21597T,T21841A -232 C6312T,C12513T,G14122T,A20559G,C23127T,T26876C,C28311T,A28900C -England/QEUH-9B703C/2020|20-09-09 C25466A,C25614T,A29101G -England/MILK-970CE0/2020|20-08-18 G26389T -233 G25494T -BGD/BCSIR_NILMRC_70/2020|MT601283.1|20-05-26 C1593T,C2940T,C10456T,G23611A -BGD/BCSIR_NILMRC_288/2020|MT847222.1|20-07-14 T15585A,C15613T,A24062G,T27484C -234 C2523T,G3994A,C5730T,C9924T,C11109T,C24138A -England/CAMC-1263B05/2021|21-02-10 G4300T,A5146G,T5347C,T6103C,A8133G,C11379T,G15543T,G19656A,T22345C,C27849T,G29212A -England/QEUH-AD3822/2020|20-10-26 G2035T,A2805G,C18555T,C21365T -235 A749G,C2113T,C6268A,C6701T,C7318T,C9438T,C14724T,A17637G,C20555T,C21660A,G22201T,C22480A,G23522C,A25856C -England/SHEF-10C9BD2/2020|20-12-20 C15081T,A19963G -England/SHEF-10CC3AA/2020|20-12-17 C1420T -236 C11514T,C13168T,G24764T -England/MILK-9A94E6/2020|20-09-01 C7764T,C27059T,G27806T,C28087T -England/MILK-566C5A/2020|20-06-12 -237 C2898T,C6681T,C7728T,G12191T,T16993C,G25311T -England/CAMC-C2CDFC/2020|20-12-07 T3366C -England/MILK-CAA0EE/2020|20-12-18 C28411T -238 C4543T,G9526T,C11497T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A -England/PHEC-1491AD/2020|20-10-17 G4006T,T18877C,T25563G -239 G13993T -England/MILK-A1BC04/2020|20-10-03 G204T,T961C,G6288T,T9651G,T13880C,C16163T,A22992G,C27263T,C28975G,A29399G -240 G5629T -241 -England/MILK-97356A/2020|20-08-14 C15720T -242 C556T,C23525T -England/CAMC-A649C9/2020|20-10-10 C6813T,C13620T -England/MILK-B04890/2020|20-10-24 G8371A,C23679T -England/MILK-A230C1/2020|20-10-03 A2175G -243 C1427T,A2285T,G5329A,G7328T,C10369T,C12513T,C14120T,C17676T,C19955T,A20916G,G23593T,G26056T,A27107T,T27384C,C28760A,C29642T -England/TFCI-26FA9B7/2020|20-12-31 -England/MILK-B94ACC/2020|20-11-13 C15237T -244 T790C,A12075G,G19542T,G19816T,A21137G,C23604A,T25705C,C28866T -England/MILK-EB78C6/2021|21-01-02 C6310T,C10369T -England/CAMC-C44338/2020|20-12-10 T1908C,C2947T,C17550T,C29509T -245 C16915T,T24202C,G28899T -246 G21204T,G29692T -England/QEUH-96A29C/2020|20-08-13 C15654T -England/ALDP-9EA6D4/2020|20-09-24 C8240T,C8357T -247 C26534T -England/MILK-A6AEC4/2020|20-10-09 C2910T,C16393T,A19387G,G20491A,C24378T -England/MILK-B889A0/2020|20-11-14 A169G,C5192T,C7224T,C8240T,C11962T,C18555T,C24916T,G25012T -248 C3811T,A6608G,A28911T -England/ALDP-EEACDD/2021|21-01-03 C1912T,C11758T,C19862T,C25511T,T25911G,G28027T,A29086T,G29402T,C29541T -England/LIVE-DDCD09/2021|21-01-02 A901T,C1377T,A4414G,C6285T,A7483G,G7936T,C9430T,C15240T,C18183T,C21772T,G23593C,T25306C,G25740T,G26951T,C28087T,C28453T -249 G28086T -USA/VA-DCLS-0229/2020|MT558657.1|20-04 C10582T,C11747T,G25459T,G25555T -USA/VA_NIDDL_3033/2020|MT776421.1|20-04-07 C27416T -250 T8296C,C12076T,G28690T,C28854T -Scotland/CVR3970/2020|20-08-22 G19846A,G20060T,C22227T,G22332T -England/MILK-A7D5AB/2020|20-10-13 C1929T,C3777T,G8102T,C26165T,C26681T,G28916A -251 A6512C -USA/UT-01683/2020|MT536956.1|20-04-13 G370T,A3841T -USA/UT-03892/2020|MT711875.1|20-04-13 C683T -252 G10793T -USA/CA-CZB-1414/2020|MT628125.1|20-03-16 C29311T -USA/CA-CZB-11962/2020|MW276532.1|20-06-17 G21724T,G25186A -253 A2161G,C16376T -USA/WA-S1281/2020|MT821642.1|20-05-12 G11417T -USA/WA-S2367/2020|MT831837.1|20-06-11 C5758T,T18453C,A28901G -254 T1918C,C6402T,C8320T,C12171T -USA/VA-DCLS-0804/2020|MT925987.1|20-07 G28079T,G29540A -USA/VA-DCLS-1454/2020|MW067779.1|20-08 G9190T,A11782G,G21893A,G26937A -255 C10507T -England/NORW-E7EBA/2020|20-05-06 A476G,A16638G,G17893T -USA/CA-QDX-1044/2020|MW065007.1|20-03-17 C1403T,G7798T -256 C9195T,T15354C -USA/WI-UW-413/2020|MT772562.1|20-04-07 C5884T,T9195C -USA/WI-UW-288/2020|MT706396.1|20-04-08 C21855T -257 C1288T,G1298A,G25445T,G28851T,G29254T -USA/GA-CDC-5095/2020|MW053297.1|20-06-29 C7162T,G29745A -USA/FL-BPHL-1097/2020|MT956684.1|20-08-19 -258 A1154G,G29474T -England/MILK-99DB3B/2020|20-08-31 T5785A,G15705A,G25687T,G27598T -England/ALDP-5D3DEC/2020|20-06-19 -259 A1096G,G14874T -USA/SEARCH-0367-SAN/2020|MT810987.1|20-04-05 C1420T -USA/SEARCH-0237-SAN/2020|MT810951.1|20-04-26 G15982T,G24914T -260 C2113T,C7765T,C17690T -261 T2113C,G9190T,G28851C -England/MILK-ACEE55/2020|20-10-21 C1812T,G22992T,T23599A,C24844T,G25687T,G28307T,C28708T -Switzerland/260079/2020|LR882418.1|20-08-25 C842T,T1359C,C10702T,C11109T,C25886T,C27429T -262 T24923C -Scotland/EDB6391/2020|20-05-13 C12194T,C13968T,C14189T -Scotland/EDB5108/2020|20-03-31 -263 T5941C,A22438T -USA/VA-DCLS-0489/2020|MT951943.1|20-05 G21600T,T27672C -USA/VA-DCLS-1388/2020|MW067734.1|20-07 G1659A,A4838G,C5548T,C14220T,C14724T -264 C346T,A28959G -Scotland/QEUH-961BB8/2020|20-08-02 C9430T,G23782T,A28336G -Switzerland/250091/2020|LR881897.1|20-08-19 G11521T,T16059C,C23896T,T25078C,T27919C -265 A25524G,C26801T,G29449T -USA/UT-UPHL-2012381006/2020|MW421943.1|20-06-18 -USA/UT-UPHL-2012984468/2020|MW421976.1|20-06-16 C10741T -266 A11246T,A23949G,C29013T -USA/UT-UPHL-2012945035/2020|MW421975.1|20-06-19 C9967T -USA/TX-QDX-3305/2020|MW522496.1|20-07-23 C5392T,C18654T,C19983T,G25177T -267 T3011C,G22205T,T27869C,T28853G -USA/WI-UW-1105/2020|MT929055.1|20-07-24 C1824T,C19718T,C25919T,C29149T -USA/RML-22/2020|MW221270.1|20-08-30 T1847C,T5119C,C5585A,C6449T,C13059T,C18928T,C26256T,G28079T,G29755T -268 C3602T,C6941T,C15324T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T -England/MILK-9750EF/2020|20-08-21 G2407C,C2902T -269 G4442T,C6525T,A16044T -270 G2407T,G11761T -England/MILK-9C3D45/2020|20-09-09 C11494T,C20468T -England/QEUH-9C7EA8/2020|20-09-11 T2924C -England/MILK-9A8AB8/2020|20-08-31 C222T -271 G4504T,T8983G,G11761T,T12655C,C26461T,A28133T -England/CAMC-106415F/2021|21-01-15 C12116T,C12459T,A23503T,A23989T,C24023T,G28899A -England/CAMC-C470F2/2020|20-12-10 C6794T,C8814T,C13452T -272 C1498T,G2659A,C6285T,T8593C,C14407T,C18171T,A20724G,A21717G,C21762T,G23012A,G23593C,T24224C,C24748T,C26305T,T26767C,C28308G,A28699G,C28887T,G29543T -BHR/740704818/2021|MW661071.1|21-01-26 C1593T,T16138C,C25667T -England/QEUH-E93C6A/2021|21-01-04 A1807G,C9565T,G18670A,C22480T,T23176C,G27916T -273 C1545T,C22879A -Scotland/CVR2931/2020|20-04-22 T1545C,C8334T,C19089T -Scotland/GCVR-172150/2020|20-03-30 -274 A11782G,G22203T -England/BRIS-124885/2020|20-03-24 T2815C,T6892C -England/BRIS-122C4F/2020|20-04-02 G27754T -275 A20268G -USA/RI-CDC-0556/2020|MT304488.1|20-03-01 C27684T -Switzerland/100198/2020|LR884312.1|20-03-17 G28881A -276 G15732T,T19143C -USA/WI-UW-1046/2020|MT928999.1|20-07-29 G2549A,C9448T,C10815T,A13712G,C14599T,C19806T,C29614T -USA/TX-DSHS-0409/2020|MW127871.1|20-06-01 G669T,C3096T,A11714G,C20823T,C22286T,A24014G,G29332T -277 C28854T -278 G27987T -Scotland/EDB3341/2020|20-04-08 -Scotland/EDB6880/2020|20-04-30 G6461T,C17550T,C24865T -279 T24076C -USA/CA-CDC-4728/2020|MW001919.1|20-06-16 G7393T,C27804T -USA/UT-UPHL-2012562796/2020|MW420527.1|20-07-18 C390T,A9984C,A15250G,G15253A,G18412T -280 C18486T,T22162C -England/ALDP-B252AA/2020|20-11-04 C147T,C934T,C2536T,G3496T,C4331T,C6738T,A13712G,T14769C,G17790T,C20259T,G21753T,C27903T -USA/CA-CZB-11549/2020|MW276537.1|20-07-12 C4898T,A11934T,G23868T -281 G16741A -USA/CA-CZB-11793/2020|MW276612.1|20-09-22 G3259T,C7720T,G11146T,G22992T,G24781T,C25584T -USA/CA-CZB-2502/2020|MW035993.1|20-05-25 C1060T,C8334T,T21000C -282 C4633T,T14643C,C22482T -USA/CA-CZB-11521/2020|MW276549.1|20-07-18 G27506T -USA/CA-CZB-11513/2020|MW276567.1|20-08-02 G23126T,G25775T -283 G1135T -USA/UT-UPHL-2008916/2020|MW206164.1|20-05-28 G1148T,G28109T -USA/MD-MDH-0227/2020|MW157244.1|20-09-23 G199T,C1288T,C3096T,A3867T,C8208T,C10641T,C21952T,A25050T,C28310T -284 G7798T -England/LOND-D5444/2020|20-04-15 C12789T -Scotland/CVR3238/2020|20-04-26 G22992T -285 G19969A -USA/SEARCH-1102-SAN/2020|MT811533.1|20-06-18 C1627T,C9430T,C14925T,C24031T,G28001C,T28251G,A28254C,C28744T -USA/CA-CZB-3893/2020|MW134296.1|20-07-21 A4143G,C6627T,C15960T,T19341C,A27834T,C28724T -286 C593T,C2445T,C5301T,C5365T,A6391G,A10399G,G11266A,C22120T,G28086T -USA/CA-LACPHL-AE00081/2020|MW642471.1|20-08-22 C16362T -USA/CA-LACPHL-AE00075/2020|MW642465.1|20-08-21 G25775T -287 T5507A -Scotland/EDB3662/2020|20-04-28 A19855G -England/ALDP-6FB8FB/2020|20-06-29 C335T,C9024T,G15906T,C21614T -288 C4596A,G19086T -USA/CA-CDC-4704/2020|MW001903.1|20-06-04 C23114T -USA/CA-CZB-4000/2020|MW134394.1|20-07-29 G9111A,C13517T,C17639T,A20649T -289 C8683T -England/LIVE-A00F3/2020|20-06-04 C6336T,C12672T,C13335T,G26173T -England/QEUH-544733/2020|20-05-14 C7564T,C12400T -290 C11575T -USA/TX-DSHS-1179/2020|MW246020.1|20-06-16 G6884A,C13487T,A16840C,C19029T,T22222C,C28115T -USA/MN-MDH-2008/2020|MW279332.1|20-09-29 A1291G,A2342G,A7291G,T7645C,C7768T -291 C1714T -England/MILK-654007/2020|20-07-04 C841T,C2048T,T5092C,C5724T,C8092T,A13516G,G18816T,G19999T,C20451T,A27675C -England/OXON-B1781/2020|20-05-04 C27213T -292 C28887T -USA/CA-CZB-3624/2020|MW134177.1|20-07-30 G1843A,C3828T,C12880T,C19386T,G25252T -USA/CA-CZB-4040/2020|MW134375.1|20-08-12 C2462T,G3994T,A18174G,G19086T,A19815G,A26105G,C26395T -293 G208T -294 T2845C -USA/UT-UPHL-2012474856/2020|MW420449.1|20-08-08 C6500T,C17125T,C21145T,C29708T -USA/FL-BPHL-2857/2020|MW566820.1|20-09-17 G9805T,G11273A,G17944T -295 G23522A -USA/CA-CZB-3903/2020|MW134295.1|20-07-24 C24106T,C25162A,C25163A,A26927G -USA/SEARCH-1094-SAN/2020|MT811526.1|20-06-19 A25747C -296 G11842A,A12759G,G18292T -Switzerland/220021/2020|LR882232.1|20-07-27 A2679G,C11767T -England/QEUH-96E08F/2020|20-08-18 G11230T,G13459T,G26450T -297 A8884G,C16694A,C26177T -USA/TX-DSHS-0945/2020|MW190134.1|20-07-03 C24258T -USA/TX-DSHS-1150/2020|MW252120.1|20-07-03 -298 G25049T -England/MILK-977645/2020|20-07-24 C3695T,C18744T -England/CAMC-B325A1/2020|20-11-05 G5504A,T25570C,C27303A,C28697T -299 C29200T,C29451T -England/CAMC-B34141/2020|20-11-05 G2995T,G3638T,C5833T,C15763T,C18981T,C19160T,A21352C,G21641T,A23998G,G26217T,C26645T,G28083T,G29751T -England/MILK-A795AF/2020|20-10-14 C643T,C3261T,G8264T,C8950T,A9650G,G11310A,A23947G,A24369T,A27256G,C27847T,C28348T,C29535T -300 A5877G,G8017T,C11008T,C20283T,C25714T,G25855T,C27434T,C27998T -USA/MD-MDH-0853/2021|MW621444.1|21-01-20 C3397T,C18591T -England/PHEC-14F392/2020|20-12-24 G3527A,T11008C,C13059T,A26594T -301 C1191T,C9521A,G29422T,A29567G -USA/PA-CDC-LC0011899/2021|MW643305.1|21-01-29 C2037T,A2271G,G6566T,C7945T,C9246T,C10116T,C10128T,C11620T,C13554T,G19648T,C23053T,G23441A,G26062T,G26113C,C26801T,G28851T -USA/TX-DSHS-1114/2020|MW228282.1|20-06-21 C24904T,A26986T -302 G2258A,A6441G,C8140T,A9204G,C29445T -USA/WI-UW-1288/2020|MW035458.1|20-09-02 C884T -USA/WA-S2808/2020|MW077495.1|20-08-31 A19137T,C19366T,G29384T -303 C832T,C2252A,G11243T,T18723C,G25720T,C27532T,C29085T -England/CAMC-94C02D/2020|20-07-15 C27371T -England/MILK-95DBDD/2020|20-06-20 A20667G -304 G15438T -Scotland/CVR3054/2020|20-04-24 T6673C,C28887T -England/MILK-95698F/2020|20-06-06 G3340T,T7258C,T8941C,G12911A -305 A10323G,C28854T -306 G21778A,T28854C -England/CAMB-79ECC/2020|20-04-01 -England/PHEC-224A2/2020|20-06-08 C9979T,G21853T,G29195T,C29272T -USA/AZ-CDC-STM-0000013-A12/2021|MW525113.1|21-01-09 C1943T,G5572T,G7042T,G11417T,T16743C,G19086T,G22992A,C24621T,G25311T,C28697T,G28907A -307 C2143T,C29370G -USA/AK-PHL414/2020|MT946886.1|20-06-03 G26062T,C29119T -USA/AK-PHL689/2020|MW173160.1|20-06-29 C6336T,G16853T,A21794G,G21800T,G25244T -308 C28833T -England/MILK-974596/2020|20-08-17 C1625T,C19170T,A20829G,A25255G,C26469T,G27666T -309 C25731T,G28703C -Switzerland/310363/2020|LR898676.1|20-10-07 G542A,A4372C,C10277T,G14268A,G29747T -310 C2706T,C28703G -Switzerland/300264/2020|LR898541.1|20-10-01 C2470T,C4084T -England/QEUH-963433/2020|20-08-10 C5339T -311 C12915T,G21255T -England/NORW-ECD21/2020|20-05-29 C1684T,C6593T,G14829T,C23525T,G29744A -England/NORW-E755B/2020|20-05-04 A4198C,C7011T -312 T9697C -England/MILK-978626/2020|20-07-30 C147T,C12473T,C19602T,C23266T,A29517G -England/MILK-9A565D/2020|20-09-03 A2140G,C3015T,C9165T,C10448T,C11866T,T28813G -313 C4582T -USA/NM-QDX-264/2020|MT806796.1|20-04-30 G6404T,C17999T,T25123C,G28378T -USA/CA-CZB-10902/2020|MW276406.1|20-08-19 C854T,A6659G,G12731A,A13276G,G14656T,G21295T,A25442T,C28093T,G29227A -314 T17126C -Scotland/EDB1198/2020|20-04-08 T5161A,C25046T,G29742T -England/PHEC-20A84/2020|20-04-20 C28201T,C28546A -315 C6472T,C7815T -Scotland/EDB6324/2020|20-06-01 G22363T,T23406C,T26972C -Scotland/EDB4579/2020|20-05-06 G13397A,C21682T -316 G29734C -317 C17104T -318 T7767C,C8047T,C22879A -319 C27800A -England/MILK-ACC08E/2020|20-10-21 G5578A,A6707G,A19116G,C22664T,T27207C,G27962T,G28812T -320 C7844T,T24925C,C27920T -Scotland/QEUH-9696CE/2020|20-08-14 C2644A,C5221T,C26985T -321 C4893T,C29762T -England/MILK-9A9F7C/2020|20-08-31 G19879A,C25433T -England/OXON-F42364/2020|20-12-18 G1306T,G4510T,T8662C,C8733T,C18032T -322 G12988T,G15598A,G18028T,T24910C,T26972C -323 G25494T -324 C25386T -England/CAMC-A57F03/2020|20-10-09 T505C,A2419G,G17058T -England/MILK-A7D15C/2020|20-10-13 C21302T,C21304A,C26256T,C27119T,C28453T -325 G28817T -Wales/PHWC-47F3A5/2020|20-10-07 T9655C,G28198T -England/ALDP-A85BCC/2020|20-10-17 T209C,T11857C -326 C20451T,G21770A -327 T7919G -England/ALDP-A2FCA3/2020|20-10-05 C24734T -Scotland/MILK-A69E6B/2020|20-10-09 A28483G,A28877G -328 G18583A -England/MILK-A7D1A7/2020|20-10-13 T4579A,T27835C -England/MILK-A91486/2020|20-10-16 G2272T,G20679T,G24586T -329 C16394T,C22127T,G23876A,G25947T -330 C29274T -331 G25218T -England/ALDP-AA169C/2020|20-10-22 C23191T,G23909A -England/MILK-A474DA/2020|20-10-06 A6659G -332 T8110C -England/ALDP-B483EA/2020|20-11-07 C10039A,T18402C,C29738T -England/QEUH-AA0035/2020|20-10-20 G11417T -333 C829T,C14697T,C18176T,G19398T,G28083T,G28975T -AUT/2021006354/2021|MW672357.1|21-02 C878T,C12374T,C20384T,C21639T,C29367T -England/MILK-E7F4C6/2021|21-01-02 T9070C,C10296T -334 G18186T,C28854T -England/CAMC-B3582D/2020|20-11-05 A9859G,C14531T -England/MILK-A796E8/2020|20-10-14 G7360T,G18255T,C22264T,C23929T,G25302T,C25672T,C27519A,C28512T -335 G1464A,A10978T,T20799C -336 G5572T,G28375T -337 G2072A,C27294T -England/MILK-9C2766/2020|20-09-10 T22189C,G27382C,A27383T,T27384C -England/ALDP-A95A9F/2020|20-10-19 T14499C,C17118T,C23854T,A27865T,T27866A -Northern_Ireland/QEUH-969C53/2020|20-08-14 C19545T,C26408T -338 G18803T -England/ALDP-9E79B0/2020|20-09-24 C5817T,T10321C,A10724G,C16469T,C21635T,G25320T -England/MILK-B561FE/2020|20-11-06 C1288T,T16213C,A23631G,C26681T,G27882T -339 C3411T,C3885T -Scotland/CVR2213/2020|20-04-11 T3411C,A3413T,A5353G -Scotland/CVR1909/2020|20-04-06 C7279T,A14001G,C26801T -340 G12550A,C20740A -Netherlands/Friesland_9/2020|LR878060.1|20-03-30 C6628T,C18483T -Netherlands/Friesland_6/2020|LR878056.1|20-03-28 C17977T,G28975T -341 C15324T -England/NOTT-10E1B3/2020|20-03-19 T3952C,C6268T,T15324C -USA/WI-UW-37/2020|MT706158.1|20-03-22 G11417T -342 C18904T,G25606T -Wales/PHWC-360E3/2020|20-04-26 A3260G,T7185C,G21867T,G25266T,A26513G,G29462C -USA/CA-QDX-2630/2020|MW191335.1|20-03-15 C21646T,C22208T -343 T10561C -Netherlands/NA_289/2020|LR878031.1|20-03-31 C12085T,A23173G,C28844T -France/10065EE/2020|MT470176.1|20-03 C26895T,C29013T -344 C3634T,C28854T -IND/nimh-19510/2020|MW181843.1|20-05-16 C1684T,G2819T,T4949C,C8025T,T28854C,G28899T,C29376T -IND/GBRC174b/2020|MT607610.1|20-06-05 C22444T -345 G28202A -France/10036BG/2020|MT470106.1|20-03 -IHUCOVID-0033|LR794417.1|? G16089A,G24794T -346 C25433T -England/PORT-2D0D4C/2020|20-04-27 A10781G,A16169G,G21600T,C29546T -Switzerland/100210/2020|LR884314.1|20-03-18 C1191A,G15260A -347 A7031G,G13617T -POL/PL_MCB_72/2020|MW273854.1|20-05-10 A2848G,C9286T,C23202T -POL/PL_MCB_97/2020|MW273879.1|20-05-10 C2570T -348 G19542T,G20679A,T27576G -Scotland/CVR3629/2020|20-05-24 G18380T -Scotland/QEUH-5456F9/2020|20-05-13 C6606T -349 C622T,G4657T,T5182C,C11758T,C12043T,G16846T,C25075T,C25904T,C28269T,C29733T -England/QEUH-9CE80D/2020|20-09-17 A21018G,C21302T,C21304A,G21305A,C27167T,C28708T -England/QEUH-990752/2020|20-08-29 -350 C15277T -AUS/VIC38/2020|MT450953.1|20-03-11 C10350T -IHUCOVID-0133|LR794459.1|? C8394T -351 A4457G,C4891T,C5907T,C12312T,A15187G,C23709T,T27576C,A28273T,A28274G,G28276C,G28280A,C28846T,C28887T -England/PHEC-1555C0/2021|21-01-16 C673T,A11430G,C21846T,C22995A,C25504G,G25894A -England/MILK-E6578E/2020|20-12-30 C5184T,A9204G,A10248G,C19975A -352 G521T,A761G,A1904G,G4904A,C6681T,C6726T,C9559T,C16762T,G16912T,G19735T,C23934T,C25642T,C26110T,G26221A,A26332G,G28380A,G29764T -England/CAMC-106052A/2021|21-01-16 C14184T,A15402G,C23170T,C24138A,C24381T,T25303C -England/LOND-12F6633/2020|20-12-15 G9425T,C21997T,G24116A,C29200T -353 G3239A,G7042T,T17142A,T17688C,G21334T,G28655A,G28881A -Switzerland/240009/2020|LR880588.1|20-08-07 -Switzerland/240084/2020|LR880634.1|20-08-12 C815T,C8752T,C25904T,G27147T -354 A26530G -355 G11596T -USA/MN67-MDH67/2020|MT911566.1|20-03-14 -Netherlands/NA_292/2020|LR878032.1|20-04-01 G20568A -356 C8293T,T18488C,T24739C -Switzerland/101166/2020|LR824397.1|20-03-31 C22323T -Switzerland/100154/2020|LR824311.1|20-03-16 C17118T -357 C15277T,A21917G -PER/covper020/2020|MW030251.1|20-07-03 T1147C,C5907T,A17429G,G21917A,C25872T,C27881T,C28651T -PER/covper091/2020|MW030227.1|20-03-17 -358 A2775G,G4255T,C13568T,A20355G -England/CAMB-737D6/2020|20-03-31 C6861T -England/CAMB-1B08D9/2020|20-05-04 C14235T,G25699T -359 G3831A -Scotland/CVR2927/2020|20-04-22 A1801G,C9857T,C18568T -Scotland/GCVR-173C30/2020|20-04-07 T7441C -360 T445C,C6286T,G21255C,C22227T,C28932T,G29645T -361 C26801G -362 C3426T,C19862T -363 C11050A -England/MILK-BB0022/2020|20-11-18 -England/MILK-BB0031/2020|20-11-18 -England/PHEC-152C73/2020|20-11-16 C21682T -364 T12226C -Scotland/QEUH-96B4E0/2020|20-08-17 C3093T,C11102T,C18555T -England/MILK-9AA782/2020|20-08-31 C16362T,C19164T,G21786T,C24904T -365 T4195A,C10977T,G25049T,G25062T,C26151T,C28657T,C29366T -Scotland/QEUH-9D11C0/2020|20-09-16 C24334T -England/QEUH-A0077A/2020|20-10-02 C6027T,T10977C,A25327G -366 C27944T -England/ALDP-AA0ED1/2020|20-10-22 C445T,G28079T -England/QEUH-A4CF6B/2020|20-10-05 C4534T,C5544T -367 G204T -368 T16242A -England/ALDP-9BE8B5/2020|20-09-09 G28745A -Scotland/EDB10724/2020|20-12-04 C2509T,C10615T,T12134C,C21365T,C22987T -369 C21614T -Scotland/CVR4309/2020|20-09-14 C7471T -370 C6317T -England/CAMC-9DFBC4/2020|20-09-21 G9658T,T21841C -England/QEUH-AD1165/2020|20-10-25 C4795T,T5471C,A21631T -371 G17944T,C24334T,T24814C,C27769T -England/ALDP-FB5E3E/2021|21-01-11 G1141A,T11522G,A13315G,C18744T,T21973C -England/ALDP-E8756E/2021|21-01-04 C12781T,G17632A,C28453T -372 T24769C,C25460T -England/ALDP-A2EAE6/2020|20-10-05 C337T,T21294A,G21295A,G21296A,A25008G -Scotland/QEUH-A636C3/2020|20-10-10 C593T,T26903C,C26936T -373 C15480T -England/QEUH-A76C07/2020|20-10-12 G21777A -England/MILK-AC7997/2020|20-10-21 C125T -374 G8179T -Scotland/QEUH-9DC927/2020|20-09-22 C4794T,T8179G,G23006A -Scotland/QEUH-9B75D3/2020|20-09-04 G29778T -375 C10507T,C11152T,C11824T,A18840G,G23309C,G26918T,G27589A,G28436T -England/QEUH-9B3A8D/2020|20-09-04 T11152C,T11824C -England/NORW-F1F9C/2020|20-10-24 C203T,C5183T,A8031G,C9207T,C25521T,G26690T -376 A1987G -377 T14721C,T25519G -England/QEUH-AE4EA4/2020|20-10-27 C26894T,T28277C,A28612G -England/ALDP-9BECB9/2020|20-09-10 C23029T -378 G6344T -Wales/PHWC-16E6A3/2020|20-10-02 C3768T,C5031T,C18555T,T20976C -England/MILK-9A9D09/2020|20-09-01 A1230G -379 C66T,G10870T,A11781G,C25614T -England/QEUH-B6C0E9/2020|20-11-11 C5730T,C14318T,C23644T,C29739T -England/CAMC-AEA62E/2020|20-10-25 C18329T -380 A1866G,A6889C,C12923T,C18029T,C19269T,A27137G -England/PHEC-14E15D/2020|20-12-09 C20178T -England/PHEC-149635/2020|20-10-28 -381 C13671T,C14805T,G17278T,A20284T,T20285C,A27755T -Switzerland/270068/2020|LR882987.1|20-09-02 G17058T -Switzerland/332169/2020|LR898966.1|20-10-22 G21830T,C27881T -382 A408G -383 C22088T,C29686T -England/ALDP-A95DE1/2020|20-10-20 G21193T,G24794T,G25135T,G26801C,T26843C -England/ALDP-9E75E9/2020|20-09-25 G2764T -384 G27877T -England/MILK-AC7B0A/2020|20-10-21 C7528T,G24098T,C28315T,G28939T -England/NOTT-11336A/2020|20-09-16 G713A,A21127G,T26163C -385 C28310A -England/MILK-ABB8D5/2020|20-10-21 C9857A,A28304T -England/NORT-2884A8/2020|20-11-22 C6525T,C10376T,G17032A,C23557T,C24106T -386 G23311C -387 T29185A -England/MILK-A799FE/2020|20-10-15 A2658G,C17004T,C17125T -England/CAMC-A417F5/2020|20-10-06 T23062C,G27459T,G29755T -388 C10626T -England/QEUH-AE2A48/2020|20-10-26 C6114A,T17208C -England/ALDP-A68CF9/2020|20-10-12 G6476T -389 G25440T,C27752T -England/CAMB-1B6439/2020|20-09-22 A10323G,C28310A -England/MILK-9F1898/2020|20-09-25 C5239T -390 G22346T -391 G28321A -England/MILK-A7CDC2/2020|20-10-13 G10996T,G24867T -England/CAMC-A5845E/2020|20-10-08 C13009T,G17721T,G18462T,C21234T,G23675C -392 G21800T,A22053C -England/ALDP-AA10DA/2020|20-10-22 T7549C,C9073T,G10870T -Wales/PHWC-4815AA/2020|20-10-13 C12049T -393 C5170T,C10078T,G11132T,G11417T,G22051T,G29179T -England/QEUH-AD0DDB/2020|20-10-26 G14187A,A25948T,C29274T -Wales/MILK-9E3240/2020|20-09-21 A9409G,T29604C -England/ALDP-A6CC8C/2020|20-10-14 C6627T,C25791T,C26270T -394 A24862G -USA/CA-CZB-2091/2020|MT750490.1|20-05-07 T7132C,C8327T,C9112T,C24442T,G25429T -Switzerland/140091/2020|LR824563.1|20-04-18 T658C,A2655C,C28629T -395 C7834T,C16997T,G25429T -England/ALDP-49A5AE/2020|20-06-13 C2983T,G10565A,C17336T -England/ALDP-4A2A77/2020|20-05-22 -396 C1909T -England/BRIS-12755E/2020|20-04-22 C9438T,G16647T,C22264T -England/BRIS-12468B/2020|20-04-09 T27576C -397 C2940T -England/NORW-E9DF7/2020|20-05-02 C7765T -Scotland/EDB156/2020|20-03-23 C4276T,C26822T,G29227A -398 C6990T -Wales/PHWC-27B20/2020|20-03-30 T22435C -Wales/PHWC-2624A/2020|20-03-27 C27476T -399 C29200T -Wales/PHWC-16930B/2020|20-04-01 C3264T -Wales/PHWC-34285/2020|20-04-14 A6616G,C12915T -400 C26256T,C29668T -USA/UT-08320/2020|MW206019.1|20-05-15 A11782G,G27987T,C28292A,G29755T -USA/UT-UPHL-2009325/2020|MW206255.1|20-05-14 C5184T,C5416T,G8017T -401 T26512C -Wales/PHWC-2BF8A/2020|20-04-02 C19011T,C22323T,C26415T -Wales/PHWC-29E43/2020|20-04-04 G9220A -402 C25350T -England/LOND-D3534/2020|20-03-27 T27280C -England/PHEC-20C24/2020|20-04-21 C3096T,G3939A,G8179T -403 T17835C -England/CAMB-7D2EA/2020|20-04-06 G26273T,C26408T,C29370T -England/LIVE-A63E5/2020|20-03-18 G680T -404 A25575C -Wales/PHWC-260C8/2020|20-03-26 C12242T,C22264T -England/BRIS-12F969/2020|20-03-30 C96T,C4113T,G14857T -405 C14741T -England/PHEC-2083F/2020|20-04-13 A187G,A5650G,C25350T -Wales/PHWC-16C6F0/2020|20-06-09 T8944C,G25552T -406 A1610G,C9344T,C13335T,C28887T -England/QEUH-B2DD0B/2020|20-11-03 G2086T,G2995T,G12031A,A17759G,A17799G,G19816T,A21231G,C21742T,T21760C,C22000T,C24370T,A25814G -England/MILK-A7B0BB/2020|20-10-14 C222T,C841T,G1958A,A4870G,C6543T,C7955T,C12488T,A25946C,C29095T -407 C5506T,G14241T -Wales/PHWC-27461/2020|20-03-31 C19374T -Wales/PHWC-29F13/2020|20-04-01 C19151T,G23612A -408 T7438C,C29353T -AUS/VIC989/2020|MT451674.1|20-03-31 A26864G,C27630T -AUS/VIC1056/2020|MT451723.1|20-04-03 A21944T -409 A187G -410 C16017T,T27212C,G27561T -USA/TX-DSHS-0342/2020|MW114979.1|20-06-13 C16393T,G18546T,C24718A,C27600T,C29421T -USA/TX-DSHS-1397/2020|MW309099.1|20-05-20 A10770G -411 C19066A -England/BRIS-12B2BD/2020|20-05-02 A1699G,C6361T,C25797T,C27577T,C27641T -England/BRIS-128DCE/2020|20-04-14 C12213T -412 G14580T -England/LIVE-A65EF/2020|20-03-19 G10523C -Wales/PHWC-2B7CE/2020|20-04-12 C9857T,G28903C -413 A2292C,C2836T,G4300T,C18568T,C18877T,G21724T,C29750T -IND/GBRC238b/2020|MT676367.1|20-06-12 T18877C,C22444T,C28887T,T29750C -IND/GBRC209a/2020|MT664202.1|20-06-11 G25563T -414 C1884T,T26497C -Scotland/GCVR-1725BE/2020|20-04-04 C6730T,G28001T -Scotland/CVR30/2020|20-03-13 -415 G4866T,C14425A -IND/GBRC99/2020|MT509504.1|20-05-06 A21511G -IND/GBRC31/2020|MT467247.1|20-04-29 C3737T,C12710T,T21890C -416 C6723T,T26094C -AUS/VIC1239/2020|MT451821.1|20-04-02 G28476T -AUS/VIC1282/2020|MW153048.1|20-04-08 G6650T,T7034C,T18974G -417 C4084T -IND/GBRC128/2020|MT539172.1|20-05-02 G5572T -IND/GBRC123/2020|MT539176.1|20-05-02 G5194T,C22326T -418 A544G,C17104T -POL/PL_MCB_32/2020|MW273814.1|20-04-22 C1594T,A3090T,C23635T -POL/PL_MCB_75/2020|MW273857.1|20-04-16 -419 G20275A -England/CAMB-7BED9/2020|20-04-04 A6672G,C10641T -Netherlands/NA_302/2020|LR878041.1|20-04-01 A3058G -420 C13862T,C28836T -England/NORT-289814/2020|20-04-01 C9165T,T21033C -England/ALDP-9ED57A/2020|20-05-08 A23796G,G23824T,C29095T -421 G2282A,T9742C,C17639T -USA/WI-UW-1385/2020|MW035549.1|20-09-06 C18508T,G19174T,G24883T,C26370T,C28868T -USA/TX-DSHS-0975/2020|MW217385.1|20-06-16 G20160T -422 C28603T,G28899T -USA/MA_MGH_00165/2020|MT520528.1|20-03-26 C10279T,C12132T,T16077C,T20401C -USA/MA_MGH_00711/2020|MT520198.1|20-04-08 A2104G,T21656C,G25244C -423 C23422T,T23849C,C29686T -Scotland/CVR129/2020|20-03-13 G29227A -Scotland/CVR52/2020|20-03-14 C25667T -424 G3338T,C3511T,A22301G,G29508A -England/ALDP-94D8D9/2020|20-06-20 C19698T,C27393T -England/ALDP-9442D4/2020|20-06-07 T3616A,T23686C,T27634C -425 G29422T -Northern_Ireland/NIRE-1022CB/2020|20-03-25 C1997T,C28708T -Netherlands/NoordHolland_18/2020|LR883316.1|20-04-27 C2509T,G12311T,C12357T,C20148T,C27925A -426 G28882A,G28883C -Poland/covid_hub_pl_ibch_0033/2020|LR899101.1|20-05-20 T241C -427 G28881A -428 C28887T -GRC/202_32984/2020|MT459870.1|20-03-12 -GRC/208_33922/2020|MT459876.1|20-03-14 -England/CAMC-947875/2020|20-07-13 G25699T,G28884T,C28896T,C29738T -429 T19839C -England/PORT-2D3B4F/2020|20-04-18 C17410T,C18788T,G21830C,C27688T,G29742T -England/EXET-136EE8/2020|20-04-20 C4784T,C15720T,C23664T -430 G3242A,G8120C,C21646T,A24205T,G28083T -Northern_Ireland/NIRE-FB967/2020|20-08-17 C4927T,C15738T,C27527T -England/QEUH-7A4BBB/2020|20-07-14 C2511T -431 G242T,C18086T -USA/WA-S2264/2020|MT831437.1|20-06-09 T242G,C5020T -USA/WA-S1922/2020|MT831459.1|20-06-03 C12528A -432 G25552T -433 G11801A -Wales/PHWC-360A7/2020|20-04-29 T4330C,T24063C -Wales/PHWC-260AA/2020|20-03-24 T7168C -434 A26332G,A28877T,G28878C -England/BRIS-185470D/2020|20-05-01 -England/BRIS-12AF02/2020|20-05-01 G27670T -435 G10262A,C22995T,A27669G -England/CAMB-83FF9/2020|20-04-25 C8290T,C12242T -England/CAMB-75895/2020|20-03-18 C4965T,C8956T -436 C28256T,C29784T -USA/WA-S2012/2020|MT831128.1|20-06-04 T8559A,G8561A,T10190C,C10507T,C19145T,G27014T,T28256C,G28690T -USA/WA-S1775/2020|MT834200.1|20-06-01 G13513A -437 C14340T,G17551A,C18877T,A19167G,C19274A,G22017T,G23012A,G23868T,T26604C,C27213T,C28833T,G29527T -England/ALDP-B82A0D/2020|20-11-14 C4456T -USA/MD-MDH-0664/2021|MW524034.1|21-01-04 G8015A,C9803T,C25797T -438 T25713C -England/MILK-11A5634/2021|21-01-29 C683T,C11747T,G22022A,T24991A,T25039C -GHA/nmimr-SARS-CoV-2-TRA-182/2021|MW598412.1|21-01-12 C5796T,C9360T -439 A11839G -England/LOND-D6EBE/2020|20-04-03 C8293T,C16575T -England/SHEF-C88A2/2020|20-04-21 T3037C,C5878T,C7735T,C10645T -440 A23756G -USA/WA-S860/2020|MT642111.1|20-04-24 C4886T,C16178T -USA/MD-MDH-0380/2020|MW292639.1|20-10-27 T1169C,G3122T,C14491T,G21641T,G25644T,G26062A,C26270T,T27900C -441 C28905T -England/QEUH-A0AFB4/2020|20-10-01 G210T,A7040T,C12534T,C21005T,T22588C,A25448G,G25595A,T27685C -England/ALDP-C48747/2020|20-12-12 G872A,A2031G,C4320T,G7452T,A7863G,G12872A,A18468C,G23126T,A23586G,G24368C,G28451C -442 C3411T,A12519G,C21757T,G23593C,A23756T,G29751T -USA/IN-CDC-STM-A100406/2021|MW519679.1|21-01-06 G2324A,A3069G,C5777T,C12439T,T12703C,C17518A,C17762T,C18647T,T25577C,A28707T -USA/UT-UPHL-2101110381/2021|MW579008.1|21-01-15 G1729A,T2545C,A5695G,G8131T,T11078C,C13724T,G19684A,G29628T -443 G3871T,C4999T,A5040G,G14371T,C15240T,G23012A,A25048G,G25166C -USA/MA-Broad_CRSP-00367/2021|MW599505.1|21-01-08 C22264T -USA/MA-MGH-03951/2021|MW617773.1|21-01-22 T27824C -444 C6573T -445 T2537G,G12191T,T16479C -Switzerland/230051/2020|LR882355.1|20-08-04 T7396C,C14120T,G25471T -Wales/MILK-9C729D/2020|20-09-12 A6659G,C6883T,C13261T,C15774T -446 C25528T -England/BRIS-12A70A/2020|20-05-01 C21077T -England/CAMB-77F61/2020|20-04-01 G22299A -447 C18115T -England/PHEC-215FB/2020|20-04-29 A5855G,C18110T,A27277G -England/PHEC-1B7C1/2020|20-04-08 -448 C27046T -Switzerland/120182/2020|LR860799.1|20-04-27 G13897T,C24621T,T26038C,G26550A,T27046C -England/ALDP-9545BA/2020|20-06-17 T1623C,C3961T,C4577T,T7009A,C15010T,C15173T,C16568A,G17058T,C20474T,G20977T,C27143T,T28026C -449 T27264G -England/ALDP-651C9D/2020|20-07-04 C3698T,A28765T -Scotland/CVR3919/2020|20-06-21 A22330G -450 C1800A,C23854T,G25972A,G27842T -England/ALDP-9558ED/2020|20-06-12 G2398A -England/NORT-286255/2020|20-09-16 C5000T,C13883T,C18395T -451 T11638C -England/BRIS-12F78D/2020|20-03-10 C25584A -Switzerland/100802/2020|LR824314.1|20-03-25 C8389T,C29708T -452 C17678T -England/NORT-282972/2020|20-03-27 -England/CAMB-80554/2020|20-04-09 T3745C -453 C21597T,C29144T -PHL/UPMNIH_C1/2020|MW243995.1|20-07 C1869T,C4686T,A12820G,C13176T,T18513A,C18606T,C18981T,C19164T,G25166C,G28209T -PHL/COVID-6009/2020|MT919790.1|20-07-18 C3736T,T10771C,C13051T,C26305T -454 C1912T -England/PHEC-20E4C/2020|20-04-16 C7200T,C8290T -England/NORT-283B7B/2020|20-04-02 T28118C,G29227A -455 C9430T -England/ALDP-95665B/2020|20-06-08 G571A,G9575A,C10074T -England/CAMB-7767B/2020|20-03-31 C23802T,C28045T -456 T1094C,C3429T,G8578T,C8917T,A10720G,G17280T,C18129T -England/CAMC-94328A/2020|20-07-25 -England/CAMC-9424A3/2020|20-07-21 -457 T760C,A1673G,C1884T,C16329T,C18120T,C18267T,C20762T,C22713T,C29296T -USA/MA-QDX-3180/2021|MW505247.1|21-01-05 -USA/PA-CDC-STM-A100419/2021|MW519668.1|21-01-06 G2086T,C11005A,C11195T,C16111T,C20936T,G27827A,A28624T -458 G3152A,G4255A,G4510T,C5884T,C6983T,C11308T,C13019T,A22155G,C29353T -England/MILK-A79D10/2020|20-10-15 C4113T,T17214C,C19324A,G28044T -England/PHEC-148F95/2020|20-10-15 C2644T,C9319T,G13348T,C19113A -459 T4711C,A6709G -USA/CA-CZB-1932/2020|MT750412.1|20-04-15 C2842T,C18570T -USA/CA-CZB-1885/2020|MT750387.1|20-04-17 C17125T -460 G5539A,G21468A -USA/CA-CZB-2288/2020|MW036089.1|20-06-19 T1937C,A15820G,T22441G -USA/CA-CZB-3891/2020|MW134292.1|20-07-21 C6578T,C16049T,G19872C,C26768T -461 C936T,G3259T -USA/VA-DCLS-1485/2020|MW205988.1|20-07 C8326T,G21641T,C26681T -USA/VA-DCLS-1212/2020|MW067767.1|20-06 A20860G,C28087T -462 C673T -USA/FL-BPHL-1506/2020|MW056153.1|20-07-24 C379T,T4125C,C14220T,T25479A -USA/FL-BPHL-1469/2020|MW040679.1|20-05-09 -463 G9130T,T27319C,G28487A,C28868T -Switzerland/250060/2020|LR881882.1|20-08-18 G1186A,C3738T,C16111T,G29706T -England/QEUH-A77F0D/2020|20-10-12 C6091T,G9389A,G12845A,C18713T,G24095T,G25249T -464 G443A,G28378T -USA/CA-CZB-11677/2020|MW276577.1|20-08-16 C21614T,C21855T,T23042C -USA/CA-CZB-13945/2020|MW565647.1|20-06-22 T6579C -465 G24781T,G29706T -466 A20742C,C28087T,C28310T,A29521T,G29645T,T29706G -England/QEUH-9AE4E1/2020|20-09-01 C18267T,G29736T -England/MILK-A180DE/2020|20-10-01 A4764G,C21952T,G26257A -England/OXON-AEBC7/2020|20-04-12 C9430T -467 C829T,C1960T,C5301T,C13247T,C14937T,T18144C,C26681T -England/QEUH-96E27A/2020|20-08-20 C936T,G25785T,G28857T -England/MILK-74C001/2020|20-06-29 C21789T,G29779T -468 C9438T,G29777T -England/LOND-D4C6B/2020|20-04-15 A8681G,C10369T -Wales/PHWC-164485/2020|20-05-02 A16653G -469 G922T,C6541T,C19983T -England/ALDP-5C701F/2020|20-06-19 T1863C,T19983C -England/ALDP-51F142/2020|20-06-02 -470 C3170T,C6336T,C27673T -England/ALDP-955FAC/2020|20-06-08 A2130T,C11572T,C19961T,G20006T,C25207T -England/ALDP-49E391/2020|20-05-20 T26260G -471 C6781T,C11916T,C19185T -USA/CA-CZB-10287/2020|MW276300.1|20-09-03 A2871C,C5575T,C8299T,C12400T,G24743A,G28086T,G28884T -USA/CA-CZB-3356/2020|MW134125.1|20-07-14 A16920G,G25906T -472 C1912T,T9151C,C9693T,C13887T,T16456C,C23248T -England/LOND-126DFA5/2020|20-12-27 C1457T,T10939C,G18292T,C21910T,A23324T,T27346C,C29741T -Wales/PHWC-4846A4/2020|20-10-24 C1348T,G5830A,C17750T,G25552T,C27005T,G28884T,T28897C,G29260T -473 C10376T,C26208T -Northern_Ireland/NIRE-10677D/2020|20-05-14 G18148A -Northern_Ireland/NIRE-106740/2020|20-05-14 C11259T,C26681T -474 C26447T -England/SHEF-C9FBB/2020|20-04-11 C1190T,A25410C,C25831T,T26447C -England/LOND-D6531/2020|20-04-22 C2710T,T2872C,C3041A -475 A27932G,G29705T -England/MILK-9705F4/2020|20-08-18 C15045T -England/ALDP-9B6440/2020|20-08-28 -476 G25088T -477 A6319G,T26149C -England/MILK-99D597/2020|20-08-30 C6629T,C15720T,G27877T,G27996T,A29424T,G29688A -478 T733C,C2749T,C3828T,A5648C,A6613G,C12778T,C13860T,G17259T,C21614T,C21621A,C21638T,G21974T,G22132T,G23012A,A23063T,C23525T,C24642T,G28167A,C28512G,A28877T,G28878C -USA/MD-MDH-0841/2021|MW621433.1|21-01-17 -USA/OK-USAFSAM-S0004/2021|MW559120.1|21-01-11 G2664A,C6627T,C15352T,C16428T,C20703T,G21786T,A22812C,C28826T -Scotland/EDB6515/2020|20-06-15 -479 C12053T -480 C100T,T10667G,C11824T,G23012A,G28628T,G28975T,C29754T -England/NORW-222D0F/2020|20-12-20 C2340T,T3766C,T12302C,A12964G,A27237G,G28077T,T28245C,C28892T -England/MILK-F72F49/2021|21-01-05 C556T,C1628A,A8233G,T14313C,A17612G,C25117T,A25575G,C25613G,C28315T,G28378T -481 T22020C,G23628T,C25728T,G26063T 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-Scotland/QEUH-96C6AD/2020|20-08-07 C19524T,C20759T,G25088T,C26912T,C28292A,C29739T -Switzerland/270108/2020|LR882077.1|20-09-03 G2782T,C15251A,C21034T,C21590T,G23302A -489 G25912T -England/PHEC-1DF03/2020|20-04-08 C18568T,G24348T -England/CAMB-1AB21F/2020|20-04-18 C6385T,C12880T -490 T22843C -USA/FL-BPHL-0838/2020|MT890317.1|20-06-20 T28010A,T28127C -USA/FL-BPHL-1607/2020|MW166073.1|20-07-28 C18652T -491 G3323T,C10369T,G18674A -England/QEUH-9DE381/2020|20-09-21 C5183T,C9246T,C9891T,C17125T,G19480T,T26409C,C27418T,A28860G -England/QEUH-95E7D8/2020|20-08-06 C14177T,C25553T,C28121T -492 A2526C,C10440T,T25316C -England/NOTT-111E3E/2020|20-06-10 G199T,C9474T,C17163T,G25186T,G29688T -England/NOTT-111117/2020|20-05-03 -493 T13827C,G18756T -England/ALDP-68EFBC/2020|20-07-02 C23430T -England/ALDP-91F278/2020|20-06-23 A5695G,C10116T,C23855T -494 C4113T,G21974C,C23191T -USA/GA-CDC-6435/2020|MT967964.1|20-07-29 C1347T,C6190T,C11758T,C12741T -USA/WI-UW-1202/2020|MW035373.1|20-08-06 C23910T,G27327T,G28690T -495 G3230A,T24076A -England/PHEC-16F19/2020|20-03-31 C4570A -England/GSTT-265D4DF/2020|20-03-19 -496 C4391A,C15848T,T19893C -England/LIVE-A2765/2020|20-05-20 C16084T,C19185T,C26625T -England/ALDP-658C87/2020|20-07-03 C1263T,G19254T,C25889T -497 C1420T -Northern_Ireland/NIRE-1038B9/2020|20-04-16 G25947C,C28312T -Northern_Ireland/NIRE-FCE85/2020|20-04-28 C12747T,G18028T -498 C19366T -Northern_Ireland/NIRE-FBB52/2020|20-04-13 C26270T -Northern_Ireland/NIRE-FAC7E/2020|20-04-15 C6114T -499 G10097A,C23731T -England/NORT-283BE4/2020|20-04-03 C24026T -500 C4002T,C13536T -England/CAMB-81070/2020|20-04-20 C4698T -501 T28110C -England/CAMB-72B44/2020|20-03-22 -England/CAMB-822D3/2020|20-04-12 -502 G2447T,G22199T -England/ALDP-94DD07/2020|20-06-19 G3164T,C7528T,G20569T,C29625T -England/ALDP-49EC3C/2020|20-05-20 G29392T,C29541T -503 G29179T -PER/covper024/2020|MW030255.1|20-07-04 C17436T,G27478T -PER/CoV-19_HRL-223/2020|MW185824.1|20-04-08 A10323G,G27160T -504 A21131G -PER/covper011/2020|MW030242.1|20-07-04 C3768T,C14265T,G17721T,C27213T,C27513T -PER/covper040/2020|MW030271.1|20-05-05 C12854T,G20752T -505 C18747T -England/MILK-B1553B/2020|20-10-23 C2509T,G5029C,C6781T,G17027T,G20164A,G22992A,A23233G,T23629G,G25606T,G28048A -England/MILK-66F889/2020|20-07-03 G14547A,G14869A,A24879G,C29421T -506 G3302A,C9693T,C11758T,C12789T,T22917G,G29422T -USA/CO-CDC-STM-000008403/2021|MW617544.1|21-01-31 A235C,T1921C,C22522T,C29259T -England/LOND-12F65DC/2021|21-01-19 G8591T,G15906T,A18594G,G23868T,G25906T,C26060T,G28079A,T28124C,T28723C,G29260T,G29543T -507 G2995T,T4871C,C6449T,C10252T,C19366T,T27808C -Switzerland/310500/2020|LR898805.1|20-10-08 C9286T,G18210T,C21306T,G28541T -Switzerland/300433/2020|LR898634.1|20-09-29 G27382T -508 T8323C,C10369T,T14345C,T15437C,G18292T,C25624T -England/QEUH-96BAA2/2020|20-08-14 G1042T,C8895T,G25250T -Wales/ALDP-B19FFD/2020|20-11-01 G922T,T10369C,A23064C,G23608T,C28453T,C29642T -509 G24794T -SRB/NS19622-16-06/2020|MW327528.1|20-06-15 -PER/covper018/2020|MW030249.1|20-07-03 G3755T,G11552T,A28356G -510 C15656T,C25936T -DK/AD3_Farm1/2020|MT919525.1|20-06-14 A5421G,A22920T -DK/KL14_Farm1/2020|MT919536.1|20-06-17 -511 A1630C,C27679T -England/BRIS-123EDF/2020|20-04-08 C2509T -England/BRIS-123F09/2020|20-04-08 C9118T -512 C3373A,C15960T -EGY/EGY_CCHE57357_A_45/2020|MW467453.1|20-06-20 C3045T,A11305G,G16110A,C16428T,C18788T,G21786T,T22369C,A29521T -513 T15960C -514 C2706T,G9968T,G16647T,T23480G -EGY/CUNCI-HGC5I001/2020|MT611527.1|20-06-02 -EGY/CUNCI-HGC5I011/2020|MT611536.1|20-06-02 -Scotland/CVR41/2020|20-03-13 C823T -515 G1820A,C6883T,G21724A,G28003C -516 C12249T -England/CAMC-AEACFF/2020|20-10-25 C3141T,C4683T,C8683T,C17690T,T19935C,C24130T,A27979G -517 G3431T,T25577C,C25626T,C27002T -England/PHEC-149FA3/2020|20-11-20 G3433A,G8084A,C11941T,C18555T,A26174C -England/QEUH-C9332B/2020|20-12-17 G9314A,C13605T,G14490A -England/MILK-9A699F/2020|20-09-01 C1457T,G3286A,C8290T,C8626T,C9298T,C24378T,G26648A,C28657T -518 C643T,C4897T,C4898T,C9561T,G22349T,C25904T,C27920T -England/CAMC-C3E586/2020|20-12-10 C3736T,C6336T,G19735T,G23611T,C26735T,C26858T -England/CAMC-DE5550/2020|20-12-29 G6320T,C10582T,C12194T,C25603T -519 C1437T,G29745T -England/ALDP-9ECEAD/2020|20-05-05 C3874T,A6659G,T8008C,C27944T -England/BRIS-12DC53/2020|20-05-02 G4720A,A4928T -520 C2062T,C5184A,C13887T,C18687T,C23248T -Scotland/QEUH-7B078B/2020|20-07-19 G14055T,C19269T -England/MILK-993EA5/2020|20-08-22 C10252T,C16733T,G25595T -521 C313T -England/BRIS-124C89/2020|20-03-26 T313C,C29119T,C29585T -USA/WA-UW-6243/2020|MT412316.1|20-04-02 C3096T -522 G4510A -523 G15438T,G25785T -England/ALDP-A525BB/2020|20-10-07 C1758T,G18337T,G24757T,G28903T,G29260T -ISR/NH_M2_0614/2020|MW194121.1|20-06-14 C541T,C1528T,C2836T,C8905T,A23125T,G28851T -524 G19480A -England/MILK-A45AF8/2020|20-10-06 G18985T,C21844T,T23084C,C25318T,G27358T -Scotland/QEUH-A613BF/2020|20-10-13 C1912T,C3619T,C4158T,G17259T,G21193T,C21846T,C25584T,C26060T,G27008T,G27827T -525 C9286T -526 C19763T -Switzerland/180039/2020|LR861669.1|20-07-01 C1912T,C10252T,C14178T -Switzerland/220022/2020|LR882244.1|20-07-27 C2062T,G6877T,T8082C,C13945T,C22687T -527 T4346C,C10376T,C14708T,C28725T,G29692T -Japan/TKYE627000_2020/2020|LC593811.1|20-08 C7728T -Japan/TKYE624705_2020/2020|LC593810.1|20-07 A158G,C706T,C5974T,A26459G -528 G10886A,G17278T,C18032T,G18105T,G18662C,C23625T,A25910G -England/QEUH-962E81/2020|20-08-10 G24755T,A27973G -England/QEUH-96E605/2020|20-08-17 C2841T -529 G28396A -England/QEUH-9F9265/2020|20-09-26 C10156T,G13459T,G15380T,G16917T,C18252T,T22756C,C27741T,G29759T -England/QEUH-98EE43/2020|20-08-25 C2453T,G22918T,G27708T -530 G1820A,C6541T -England/NORW-E8709/2020|20-04-18 A9737G,A29242G -UnitedKingdom/NORW-EBD5F/2020|LR821823.1|20-05-06 A3740G,C12786T,C26333T -531 A11348G -USA/ME-HETL-J0061/2020|MT886346.1|20-03-20 G28690T -USA/CA-QDX-1599/2020|MW190335.1|20-03-19 G2534T,G9130A,G29422A -532 C5700A -England/QEUH-9600C9/2020|20-08-05 C2113T,C6696T,G11761T,C14724T,C22450T,C25791T,C26894T -England/QEUH-9B92F8/2020|20-09-07 C245T,G3250T,C11020T,C11109T,G16377T,C27874T -533 T682C,C900T,G3259T,C4048T,C14937T,C17802T,C23604A,C24130T,C25721T,G25767T,G28903T -IND/GBRC455b/2020|MW600453.1|20-12-24 G160T,T313C -IND/GBRC455a/2020|MW600436.1|20-12-24 G160T -534 C823T -USA/FL-BPHL-0905/2020|MT966149.1|20-06-24 A8565C,A28847T -USA/FL-BPHL-0303/2020|MT757111.1|20-05-30 A11023G -535 C27128T -England/CAMB-76490/2020|20-03-30 G8171A,A16541G,A17730G -England/CAMB-7CBD1/2020|20-04-05 G960T,G26589C -536 C8917T,C18167T,G21518T,G28975T -Japan/TKYE630414_2020/2020|LC593818.1|20-08 G27604A,C29679T -Japan/TKYE622411_2020/2020|LC593808.1|20-07 G29773T -537 G3056A,G11221T,G12514T,G17259T,C19089T,G23120T,A28338G,G29690T -England/MILK-A18C8F/2020|20-10-03 -England/ALDP-C3C1FD/2020|20-12-10 C19264T,T22672C,A23869G,T28340C -538 G22627A,G28628T -Wales/PHWC-15E0B7/2020|20-05-13 C1063T,G16117T,C27849T -Wales/PHWC-30957/2020|20-04-08 T11654C -539 G25563C,G28178T -Japan/TKYVE11964_2020/2020|LC556322.1|20-04 G20134T,C24621A,G28300T -LC573289.2|20-06 G2305T -540 C2509T,C14724T,G24262T,G27703T -TUR/Kafkas-SARSCoV2-0036/2020|MT787743.1|20-07-15 G5015A -TUR/Kafkas-SARSCoV2-0026/2020|MT789689.1|20-07-15 G4148T,G5015A,C13620T,G28166A -541 T27645A,G27666A -USA/CA-CZB-4049/2020|MW134382.1|20-08-21 C5979T,G29648T -USA/CA-CZB-3294/2020|MW134115.1|20-07-20 T14127C,T14745G,G19180T,G22154T -542 T29148C -543 G25793T,T27299C -544 T25793G -BRA/LRV-SARS.CoV-2.1/2020|MT807936.1|20-05-08 C28969T -USA/WI-UW-114/2020|MT706234.1|20-03-30 A14330G,A27989G -545 C25916T,C29769T -USA/FL-BPHL-2014/2020|MW286586.1|20-06-19 C3828T,C4456T,T6055C,G8131T,C13051T,C18647T,G21204T,C28367T -USA/MA_MGH_00693/2020|MT520290.1|20-04-06 T28360C -546 A2475G -CHL/Santiago-PUC_MVL_0491/2020|MW365473.1|20-05-13 C14805T -CHL/Puerto_Montt-PUC_MVL_0534/2020|MW365467.1|20-05-27 C11750T,C18183T,C25731T -547 G26416T -ARG/Cordoba-2858/2020|MW633904.1|20-09-14 C2044T,C10626T,C11824T,A22052C,C26645T,C29555T -ARG/Cordoba-1484/2020|MW633909.1|20-09-17 C1663T,G3155T,A4485G,C5493T,G14020T,C27431T -England/CAMB-74D5B/2020|20-03-19 -England/LOND-D53CF/2020|20-04-15 G621A -548 G18907T -549 G18898T -USA/CA-CZB-1871/2020|MT750377.1|20-04-28 G1323T,T18907G,C21772T -USA/CA-CZB-2358/2020|MW036004.1|20-05-13 C823T,C1457T,G3304T,A20055G,C22208T,C29095T -550 C22314T,T24796C -Wales/PHWC-1645BF/2020|20-05-06 C5192T,C12400T,C25710T,C28432T -Wales/PHWC-33C88/2020|20-04-17 G6358A,A14328G,G29736A -551 G6356A,C7113T,C8991T,T14238C,A18270C,T18989C,C21058T,C23525T -USA/WA-S2724/2020|MT947562.1|20-07-04 -USA/WA-S2728/2020|MT947566.1|20-07-08 -552 G26615T -Scotland/EDB5196/2020|20-05-18 C13384T,A18902C,C27644A,A29767C -Scotland/CVR3185/2020|20-04-28 C16946T -553 C17249T,G17722T -England/BRIS-127363/2020|20-04-24 G174T,G5572T,G12202T,T16521C -England/BRIS-127A40/2020|20-04-17 G2659T -554 A10260G,A10880G -Northern_Ireland/NIRE-FB9C1/2020|20-08-13 G16197T,C24382T -England/MILK-99DE32/2020|20-08-31 C2880T,A4044C,C6896T,A8413G,G19086T -555 G2164A -England/CAMB-83A9E/2020|20-04-15 G7761A,C14931T -England/EXET-136ED9/2020|20-04-22 C8733T -556 G3896T -England/ALDP-955D39/2020|20-06-12 G5629T,G19889T,C27673T -Switzerland/300258/2020|LR898536.1|20-10-01 C6701T,C12116T,C14352T,G17334T -557 C18713T -England/SHEF-D1D3E/2020|20-04-22 C21618T,C25047T,C29095T,G29747T -England/SHEF-CBE43/2020|20-04-26 C11396T,C17676T -558 G625T,C13665T,C15960T,G16741T,C26464T,G29747T,C29750T -England/CAMC-949688/2020|20-07-27 T3694C,G20580T -England/SHEF-C3AED/2020|20-07-30 C401T,T1438C -559 A8072G -England/ALDP-90D6AE/2020|20-06-24 A3776G,C21855T,G25166C,C25831T,C26111T,C26195T -POL/PL_P12/2020|MT511068.1|20-03-31 C106T,C8025T -560 T3873C,G3880A -England/MILK-ABBCCA/2020|20-10-21 A14144G,T20196C,C23536A -England/MILK-ACCF27/2020|20-10-21 C18131T,G26640T -561 C9120T,C18032T,C20233T,G24926T,A27674T,A29350G -England/QEUH-99923A/2020|20-08-24 G974A,C7267T -England/MILK-825C54/2020|20-07-16 G680A,C14120T -562 A20742C -England/MILK-9E2BDD/2020|20-09-20 A9337G,A27086T -Northern_Ireland/NIRE-1088C3/2020|20-09-13 C16260T,G25340T,C27684T -563 T505C,G872T,C3261T,T7783C,A15984T,C20946T,C22075T,G25552T,C27945T,G28221T,C29750T -England/MILK-99D755/2020|20-08-31 T4303C,C25553T,G25599T -England/MILK-99D764/2020|20-08-31 G20125A,G22484T -564 G569A,C5482T,G17944T,C18747T,A22182G -England/ALDP-907D09/2020|20-06-22 C20320T -England/MILK-85E3E4/2020|20-07-18 G2144T -565 A2641G,C3622T,C25844T,C28087T -England/MILK-95862C/2020|20-06-11 G28557T -England/ALDP-94EF88/2020|20-06-16 C2106T,C12073T,C14676T,T20989C -566 G21624T -England/PHEC-219E0/2020|20-05-01 T23227C -England/LEED-2AA59E/2020|20-04-06 C28969T -567 T5465C,G24102A -Wales/PHWC-16578B/2020|20-06-07 A489G,G6387A,C19185T,A25800T,A25801T -Wales/PHWC-166104/2020|20-05-15 T6025C,A9361T,G10255T,C13264T,G17572T,G19398A,G28703T -568 G18859T -England/BRIS-125D67/2020|20-03-29 C6347T -England/BRIS-12C841/2020|20-05-12 A14691G,T19473C,T22325C -569 G1874T,C8683T,C28093T -England/ALDP-94D8F7/2020|20-06-20 A9997C -England/NOTT-111BFB/2020|20-05-29 G26426A -570 A2641G,C9803A,A10786G,C10833T,C18687T,C25844T,T27811C -England/ALDP-95A754/2020|20-06-13 T20764C -England/ALDP-95CEA8/2020|20-06-15 C14931T -571 T29464C -572 G26918T -England/MILK-8664D7/2020|20-07-17 C29733T -England/MILK-993300/2020|20-08-26 C8290T,C19367T,C23525T -573 C7843T,G15438T,C25207T,C28453T -England/CAMC-947392/2020|20-07-18 T25949C -England/MILK-977469/2020|20-07-24 C2536T,T7843C,C8318A,T26160C -England/MILK-629D13/2020|20-07-05 G1820A,C11003T,T13417C,G22409T,C25896T,G25963A -574 G4181T,G5326T,C5694T,C5812T,C6573T,C16293T,G22021T,T23633G -England/PORT-2F5752/2020|20-10-13 C18329T,G20062T,C23185T -England/QEUH-96A4C3/2020|20-08-13 G3403T,C5691T -575 A10948G -576 T9172C,G26730T -USA/VA-DCLS-1073/2020|MT981458.1|20-06 T27846C,C29171T -USA/VA-DCLS-0120/2020|MT482111.1|20-04 C10818T,C21998T -577 C6312A -Wales/PHWC-162751/2020|20-05-27 G18538T,A20136G -England/ALDP-497D12/2020|20-06-03 T3334A,A6375G,G24926T,C25665T -578 G20931A -England/SHEF-C13B7/2020|20-05-19 G10870T,C15315T -England/SHEF-10B2E79/2020|20-05-16 A9272C,G26416T -579 C6582T -England/OXON-AEF9E/2020|20-04-07 C140T,T6582A -Wales/PHWC-162E7A/2020|20-05-19 C5497T -580 C12488T,C25528T,G27084A -USA/WI-UW-982/2020|MT846668.1|20-07-21 G17964T,G22801T -USA/SEARCH-1050-SAN/2020|MT811490.1|20-06-21 A22108G,C28344T -581 A25505C -USA/FL-QDX-228/2020|MT806770.1|20-04-18 G675T,C4456T,A21625G -USA/VA-DCLS-0920/2020|MT929088.1|20-05 C8664A,G8851A,C19983T,G29755T -582 C21637T,A28169G -England/ALDP-71D072/2020|20-07-01 T26156C -England/MILK-9573DB/2020|20-06-10 T9292C,C21910T -583 G25617T -England/ALDP-954C6A/2020|20-06-13 G27857T -England/ALDP-A524EB/2020|20-10-07 C3099T,C17678T,G19816A,C25728T -584 G1590T,A11120G -England/ALDP-9D9104/2020|20-09-18 C2462A,C10615T,G27047T -England/CAMC-A40F67/2020|20-10-06 A12529G -585 G11230T,G11401T,T24088C -Scotland/QEUH-A00DF0/2020|20-10-02 A11546G,C29730G -England/ALDP-9CC5BD/2020|20-09-15 C11224T,G28307C -586 C835T -England/QEUH-9B6EAC/2020|20-09-09 A29700G -England/NORT-2A4CAE/2020|20-09-17 C27945T -587 A6900G -Northern_Ireland/NIRE-FB3A5/2020|20-08-29 A3801G,C26985T -Northern_Ireland/NIRE-FB369/2020|20-08-31 G25456T -588 C2638T -Wales/ALDP-6C3E72/2020|20-07-01 C13329T,C29675T -England/ALDP-5A15D0/2020|20-06-14 G6589A,A22528G -589 G21724T -590 G11230T,G23587C -England/LEED-2AA4EC/2020|20-04-06 C22326T,C27128T -England/LEED-2AA394/2020|20-03-31 C20941T -591 T7792C -England/BRIS-1854318/2020|20-04-28 C4780T,G22468T -England/BRIS-12E6FA/2020|20-04-20 C14676T,C17119T -592 G17302T,C25046T -England/WSFT-25C13CB/2020|20-04-17 -England/PORT-2F5D9C/2020|20-06-05 A5277G -593 C222T,C21780T -Wales/PHWC-16881C/2020|20-04-21 C19602T,G29779A -Wales/PHWC-3612C/2020|20-04-28 C7932T,C8964T,C13274T,C14097T -594 C20474T 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G23401T -Wales/PHWC-34610/2020|20-04-21 G16014A -617 C26313T -Netherlands/NA_436/2020|LR883367.1|20-04-07 G29628T -Netherlands/Friesland_33/2020|LR883315.1|20-04-14 C4824T -618 C913T,C3267T,C5388A,C5986T,T6954C,C14676T,C15279T,T16176C,A23063T,C23271A,C23604A,C23709T,T24506G,G24914C,C27972T,G28048T,A28111G,G28280C,A28281T,T28282A,C28977T -619 G174T,G210T,C2453T -England/CAMC-B36516/2020|20-11-05 C2918T -England/CAMC-B362D3/2020|20-11-05 C29311T -620 T8603C,A17615G,G25437T -England/MILK-B3A284/2020|20-11-01 C27046T -England/CAMC-B365AD/2020|20-11-05 T19232C -621 A1163T -BGD/BCSIR_NILMRC_104/2020|MT655948.1|20-06-07 C19273T -BGD/BCSIR_NILMRC_133/2020|MT731733.1|20-06-18 G15260T,G26268T -622 C7600T,G7798T,T23548C -AUS/VIC3114/2020|MT972550.1|20-07-06 C24912T,T27484C -AUS/VIC9664/2020|MW156172.1|20-08-12 C506T,G29072T -623 T7540C,G16647T,G22992A,G23401A -AUS/VIC13094/2020|MW185501.1|20-07-31 G6662A -624 C18555T,C22987T -AUS/VIC9179/2020|MW153248.1|20-08-21 G1338C,C5691T,A11425T,C20089T -AUS/VIC11646/2020|MW155572.1|20-07-22 G6617T -625 C19488T -England/CAMB-82060/2020|20-04-21 C5575T,A5991G,C13329T -England/CAMB-82E1B/2020|20-04-14 A8374T -626 G5572A,A6366T,G11410A,G25776T -covid_hub_pl_ibch_0157|LR991987.1|20-05-19 A4228G,A11410G,G23403A -Poland/1/2020|LR899030.1|20-05-20 T241C,T9440G,G17964T,T19488C,G29747T -627 A8244G,G8408A,G12191T,T26171A,C28500T,G29254A,G29474T,G29751C -England/CAMC-947259/2020|20-07-21 -England/MILK-9927C9/2020|20-08-27 T595C,G2659T,G15773A,C21789T,G24197T,G26172T -628 A11869G,T27484C -SAU/KFSHRC44/2020|MT820480.1|20-04-11 -SAU/KAIMRC67/2020|MT820487.1|20-04-01 G29422T -629 C2399T -Scotland/EDB300/2020|20-03-29 C15240T -Scotland/CVR3194/2020|20-04-28 C10335T,A11430G,G19117T,G25429A,A27232G,C28940T -630 T4149C,C12525T,G25599T -England/CAMB-1AA438/2020|20-04-17 -England/CAMB-1AFB7A/2020|20-05-02 C6016T,A8031G,C29353T -631 A1163T,T3256C,C5622T,G14202T,G19542T,C19718T,C22388T,C26060T,G29227T,C29466T,A29771G -Wales/PHWC-48212D/2020|20-10-20 G22381T,C26029A -England/QEUH-9C80B0/2020|20-09-10 G22471T,T22896C -632 T1543A,T4369C,T22020C,C27911T -England/MILK-9C4087/2020|20-09-09 C1938T -England/QEUH-96F349/2020|20-08-17 G21606T,C21910T,T21976C,G28230T -633 T15978C,G24794T -England/BIRM-5FC3B/2020|20-05-28 A8390G,C18676T,C19366T,C28311T,G29764A -England/PHEC-13ADF/2020|20-03-13 -634 C8917T -England/BIRM-6529A/2020|20-09-30 C147T,G9389A,C15720T,G27955T,C27972T,G28628T,G29645T -USA/WA-S2831/2020|MW077478.1|20-09-08 C478T,C1076T,C1218T,T2484C,C9924T,C10279T,G11596T,G12769A,C14724T,A19540G,G25906T,C27110T,T27384C -635 G27996T -England/NORT-282796/2020|20-03-28 A1755G,C15824T -England/NORT-2839AE/2020|20-04-01 G29315T,G29468C -636 C527T,C1962T,C7735T,T23255C,A28065C -England/ALDP-951E49/2020|20-06-10 C16045T,C28732T -England/ALDP-9557A4/2020|20-06-12 C19454T,T19538C -637 G21255C,G28960T -USA/CA-CZB-2205/2020|MW035956.1|20-05-27 C21364T,C26625T,C28744T -USA/CA-CZB-2184/2020|MW035923.1|20-05-26 C21205T -638 C5700A 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