Mercurial > repos > iuc > usher_matutils
diff test-data/test_13_path_clades.tabular @ 0:79e2ee4e6ebb draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/usher commit c1531745ea5f5c4fbd22ad18e290b47fdcb01bb1"
| author | iuc |
|---|---|
| date | Tue, 11 May 2021 17:54:51 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test_13_path_clades.tabular Tue May 11 17:54:51 2021 +0000 @@ -0,0 +1,90 @@ +clade root_id from_tree_root +20A 28 C241T,C3037T,C14408T,A23403G +B.1.108 28 C241T,C3037T,C14408T,A23403G +B.1.350 53 C241T,C3037T,C14408T,A23403G > G25563T +20C 61 C241T,C3037T,C14408T,A23403G > G25563T > C1059T +B.1.371 61 C241T,C3037T,C14408T,A23403G > G25563T > C1059T +B.1.440 212 C241T,C3037T,C14408T,A23403G > G25563T > C18877T,C26735T +B.1.221 268 C241T,C3037T,C14408T,A23403G > > C3602T,C6941T,C15324T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T +B.1.505 99 C241T,C3037T,C14408T,A23403G > G25563T > C1059T > C66A,C4455T,C7768T,A8773G,C11916T,C17304T,C18998T,T24805C,C26270T,G29540A +B.1.465 216 C241T,C3037T,C14408T,A23403G > G25563T > C18877T,C26735T > T241C,A8821G,C15752T,G24197T,T26066C +B.1.182 318 C241T,C3037T,C14408T,A23403G > > > T7767C,C8047T,C17104T,A20268G,C22879A,G29734C +B.1.221.1 269 C241T,C3037T,C14408T,A23403G > > C3602T,C6941T,C15324T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T > G4442T,C6525T,A16044T +B.1.221.2 271 C241T,C3037T,C14408T,A23403G > > C3602T,C6941T,C15324T,C21855T,A25505G,G25906C,G25996T,C28651T,C28869T > G4504T,T8983G,G11761T,T12655C,C26461T,A28133T +20G 109 C241T,C3037T,C14408T,A23403G > G25563T > C1059T > > C10319T,A18424G,C21304T,G25907T,C27964T,C28472T,C28869T +B.1.2 109 C241T,C3037T,C14408T,A23403G > G25563T > C1059T > > C10319T,A18424G,C21304T,G25907T,C27964T,C28472T,C28869T +B.1.523 217 C241T,C3037T,C14408T,A23403G > G25563T > C18877T,C26735T > > G1659T,C3884T,C20199T,C26139T,T27634C,G28975T +20E.EU1 361 C241T,C3037T,C14408T,A23403G > > > > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T +B.1.177.14 361 C241T,C3037T,C14408T,A23403G > > > > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T +B.1.258 319 C241T,C3037T,C14408T,A23403G > > > T7767C,C8047T,C17104T,A20268G,C22879A,G29734C > C27800A +B.1.427 136 C241T,C3037T,C14408T,A23403G > G25563T > C1059T > > G17014T,G21600T,G22018T,T22917G,C26681T,A28272T,C28887T,C29362T > G9738C,G13713A,C16394T +B.1.429 138 C241T,C3037T,C14408T,A23403G > G25563T > C1059T > > G17014T,G21600T,G22018T,T22917G,C26681T,A28272T,C28887T,C29362T > C2395T,T2597C,C8947T,C12100T,A12878G,T24349C,G27890T +B.1.36 223 C241T,C3037T,C14408T,A23403G > G25563T > C18877T,C26735T > > > C22444T,C28854T +B.1.160 238 C241T,C3037T,C14408T,A23403G > G25563T > C18877T,C26735T > > > C4543T,G9526T,C11497T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A +20B 427 C241T,C3037T,C14408T,A23403G > > > > > G28881A,G28882A,G28883C +B.1.1.119 427 C241T,C3037T,C14408T,A23403G > > > > > G28881A,G28882A,G28883C +B.1.1.77 655 C241T,C3037T,C14408T,A23403G > > > > > T19839C,G28881A,G28882A,G28883C +B.1.177.11 365 C241T,C3037T,C14408T,A23403G > > > > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > T4195A,C10977T,G25049T,G25062T,C26151T,C28657T,C29366T +B.1.258.16 321 C241T,C3037T,C14408T,A23403G > > > T7767C,C8047T,C17104T,A20268G,C22879A,G29734C > C27800A > C4893T,C7844T,T24925C,C27920T,C29762T +B.1.258.2 336 C241T,C3037T,C14408T,A23403G > > > T7767C,C8047T,C17104T,A20268G,C22879A,G29734C > G1464A,A10978T,T20799C > G5572T,G28375T +B.1.258.3 338 C241T,C3037T,C14408T,A23403G > > > T7767C,C8047T,C17104T,A20268G,C22879A,G29734C > G1464A,A10978T,T20799C > G18803T +B.1.1.4 429 C241T,C3037T,C14408T,A23403G > > > > > G28881A,G28882A,G28883C > T19839C +B.1.177 366 C241T,C3037T,C14408T,A23403G > > > > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > > C27944T +G.1 337 C241T,C3037T,C14408T,A23403G > > > T7767C,C8047T,C17104T,A20268G,C22879A,G29734C > G1464A,A10978T,T20799C > G5572T,G28375T > G2072A,C27294T +B.1.36.1 225 C241T,C3037T,C14408T,A23403G > G25563T > C18877T,C26735T > > > C22444T,C28854T > T1947C > G2659T,G5008T,G19549T,G22918T,C25349A,G25947C,G26062T +20A.EU2 240 C241T,C3037T,C14408T,A23403G > G25563T > C18877T,C26735T > > > C4543T,G9526T,C11497T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A > G13993T > G5629T +B.1.316 438 C241T,C3037T,C14408T,A23403G > > > > > G28881A,G28882A,G28883C > T19839C > C14340T,G17551A,C18877T,A19167G,C19274A,G22017T,G23012A,G23868T,T25713C,T26604C,C27213T,C28833T,G29527T +R.2 443 C241T,C3037T,C14408T,A23403G > > > > > G28881A,G28882A,G28883C > T19839C > C3411T,G3871T,C4999T,A5040G,A12519G,G14371T,C15240T,C21757T,G23012A,G23593C,A23756T,A25048G,G25166C,G29751T +20D 500 C241T,C3037T,C14408T,A23403G > > > > > G28881A,G28882A,G28883C > > C4002T,G10097A,C13536T,C23731T +C.6 500 C241T,C3037T,C14408T,A23403G > > > > > G28881A,G28882A,G28883C > > C4002T,G10097A,C13536T,C23731T +B.1.1.224 656 C241T,C3037T,C14408T,A23403G > > > > > T19839C,G28881A,G28882A,G28883C > > C4321T,T8800C,T15801C,C17746T,C26801T,G27703T,C28320T +B.1.177.23 381 C241T,C3037T,C14408T,A23403G > > > > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > > > C13671T,C14805T,G17278T,A20284T,T20285C,A27755T +B.1.258.6 324 C241T,C3037T,C14408T,A23403G > > > T7767C,C8047T,C17104T,A20268G,C22879A,G29734C > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > G25494T > C25386T +B.1.258.7 325 C241T,C3037T,C14408T,A23403G > > > T7767C,C8047T,C17104T,A20268G,C22879A,G29734C > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > G25494T > G28817T +B.1.36.17 227 C241T,C3037T,C14408T,A23403G > G25563T > C18877T,C26735T > > > C22444T,C28854T > T1947C > > C7528T,C29555T +B.1.36.27 228 C241T,C3037T,C14408T,A23403G > G25563T > C18877T,C26735T > > > C22444T,C28854T > T1947C > > G922A,G3431T,T5653C,G5950A,C7504T,T24175C,C26060T +B.1.36.23 232 C241T,C3037T,C14408T,A23403G > G25563T > C18877T,C26735T > > > C22444T,C28854T > > > C6312T,C12513T,G14122T,A20559G,C23127T,T26876C,C28311T,A28900C +B.1.36.24 235 C241T,C3037T,C14408T,A23403G > G25563T > C18877T,C26735T > > > C22444T,C28854T > > > A749G,C2113T,C6268A,C6701T,C7318T,C9438T,C14724T,A17637G,C20555T,C21660A,G22201T,C22480A,G23522C,A25856C +B.1.36.21 230 C241T,C3037T,C14408T,A23403G > G25563T > C18877T,C26735T > > > C22444T,C28854T > > C2836T,G21724T > C1122T,T2836C,T4057C,G6077T,A10323G,G13858T,C27092T,C27434T,G28975T +B.1.36.26 231 C241T,C3037T,C14408T,A23403G > G25563T > C18877T,C26735T > > > C22444T,C28854T > > C2836T,G21724T > G61T,C913T,C1541T,C11259T,C25000T,G26144A,G26849T,C29358T +B.1.1.294 515 C241T,C3037T,C14408T,A23403G > > > > > G28881A,G28882A,G28883C > > > G1820A,C3373A,C6883T,G21724A,G28003C +C.16 506 C241T,C3037T,C14408T,A23403G > > > > > G28881A,G28882A,G28883C > > C4002T,G10097A,C13536T,C23731T > G3302A,C9693T,C11758T,C12789T,T22917G,G29422T +C.5 507 C241T,C3037T,C14408T,A23403G > > > > > G28881A,G28882A,G28883C > > C4002T,G10097A,C13536T,C23731T > G2995T,T4871C,C6449T,C10252T,C19366T,T27808C +B.1.258.10 327 C241T,C3037T,C14408T,A23403G > > > T7767C,C8047T,C17104T,A20268G,C22879A,G29734C > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > > C20451T,G21770A > T7919G +B.1.258.12 328 C241T,C3037T,C14408T,A23403G > > > T7767C,C8047T,C17104T,A20268G,C22879A,G29734C > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > > C20451T,G21770A > G18583A +B.1.258.17 333 C241T,C3037T,C14408T,A23403G > > > T7767C,C8047T,C17104T,A20268G,C22879A,G29734C > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > > C16394T,C22127T,G23876A,G25947T > C829T,C14697T,C18176T,G19398T,G28083T,G28975T +B.1.160.7 242 C241T,C3037T,C14408T,A23403G > G25563T > C18877T,C26735T > > > C4543T,G9526T,C11497T,G15766T,A16889G,G17019T,G22992A,C25710T,T26876C,G28975C,G29399A > G13993T > G5629T > > C556T,C23525T +B.1.1.114 521 C241T,C3037T,C14408T,A23403G > > > > > G28881A,G28882A,G28883C > > > > C313T +B.1.177.16 385 C241T,C3037T,C14408T,A23403G > > > > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > > > > > C28310A +B.1.177.17 383 C241T,C3037T,C14408T,A23403G > > > > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > > > > A408G > C22088T,C29686T +B.1.177.13 384 C241T,C3037T,C14408T,A23403G > > > > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > > > > A408G > G27877T +B.1.258.4 331 C241T,C3037T,C14408T,A23403G > > > T7767C,C8047T,C17104T,A20268G,C22879A,G29734C > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > > C16394T,C22127T,G23876A,G25947T > C29274T > G25218T +B.1.258.5 332 C241T,C3037T,C14408T,A23403G > > > T7767C,C8047T,C17104T,A20268G,C22879A,G29734C > C27800A > G12988T,G15598A,G18028T,T24910C,T26972C > > C16394T,C22127T,G23876A,G25947T > C29274T > T8110C +B.1.1.227 558 C241T,C3037T,C14408T,A23403G > > > > > G28881A,G28882A,G28883C > > > > > G625T,C13665T,C15960T,G16741T,C26464T,G29747T,C29750T +B.1.1.303 528 C241T,C3037T,C14408T,A23403G > > > > > G28881A,G28882A,G28883C > > > > C313T > G10886A,G17278T,C18032T,G18105T,G18662C,C23625T,A25910G +B.1.1.214 Japan/TKYE622411_2020/2020|LC593808.1|20-07 C241T,C3037T,C14408T,A23403G > > > > > G28881A,G28882A,G28883C > > > > C313T > C8917T,C18167T,G21518T,G28975T,G29773T +M.1 517 C241T,C3037T,C14408T,A23403G > > > > > G28881A,G28882A,G28883C > > > G1820A,C3373A,C6883T,G21724A,G28003C > C12249T > G3431T,T25577C,C25626T,C27002T +B.1.177.26 375 C241T,C3037T,C14408T,A23403G > > > > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > > C27944T > > > > C10507T,C11152T,C11824T,A18840G,G23309C,G26918T,G27589A,G28436T +B.1.177.21 368 C241T,C3037T,C14408T,A23403G > > > > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > > C27944T > > > G204T > T16242A +B.1.177.22 369 C241T,C3037T,C14408T,A23403G > > > > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > > C27944T > > > G204T > C21614T +B.1.1.198 563 C241T,C3037T,C14408T,A23403G > > > > > G28881A,G28882A,G28883C > > > > > > T505C,G872T,C3261T,T7783C,A15984T,C20946T,C22075T,G25552T,C27945T,G28221T,C29750T +B.1.177.15 393 C241T,C3037T,C14408T,A23403G > > > > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > > > > > > > C5170T,C10078T,G11132T,G11417T,G22051T,G29179T +B.1.177.19 387 C241T,C3037T,C14408T,A23403G > > > > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > > > > > > G23311C > T29185A +B.1.177.25 380 C241T,C3037T,C14408T,A23403G > > > > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > > C27944T > > > > > A1866G,A6889C,C12923T,C18029T,C19269T,A27137G +B.1.146 573 C241T,C3037T,C14408T,A23403G > > > > > G28881A,G28882A,G28883C > > > > > > > C7843T,G15438T,C25207T,G26918T,C28453T,T29464C +B.1.177.10 391 C241T,C3037T,C14408T,A23403G > > > > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > > > > > > > G22346T > G28321A +B.1.177.9 392 C241T,C3037T,C14408T,A23403G > > > > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > > > > > > > G22346T > G21800T,A22053C +B.1.177.20 388 C241T,C3037T,C14408T,A23403G > > > > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > > > > > > G23311C > > C10626T +B.1.177.18 389 C241T,C3037T,C14408T,A23403G > > > > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > > > > > > G23311C > > G25440T,C27752T +B.1.177.2 377 C241T,C3037T,C14408T,A23403G > > > > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > > C27944T > > > > > A1987G > T14721C,T25519G +B.1.177.6 370 C241T,C3037T,C14408T,A23403G > > > > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > > C27944T > > > G204T > C21614T > > C6317T +20I/501Y.V1 618 C241T,C3037T,C14408T,A23403G > > > > > G28881A,G28882A,G28883C > > > > > > > > C913T,C3267T,C5388A,C5986T,T6954C,C14676T,C15279T,T16176C,A23063T,C23271A,C23604A,C23709T,T24506G,G24914C,C27972T,G28048T,A28111G,G28280C,A28281T,T28282A,C28977T +B.1.1.7 618 C241T,C3037T,C14408T,A23403G > > > > > G28881A,G28882A,G28883C > > > > > > > > C913T,C3267T,C5388A,C5986T,T6954C,C14676T,C15279T,T16176C,A23063T,C23271A,C23604A,C23709T,T24506G,G24914C,C27972T,G28048T,A28111G,G28280C,A28281T,T28282A,C28977T +B.1.177.3 378 C241T,C3037T,C14408T,A23403G > > > > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > > C27944T > > > > > A1987G > > G6344T +B.1.177.4 379 C241T,C3037T,C14408T,A23403G > > > > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > > C27944T > > > > > A1987G > > C66T,G10870T,A11781G,C25614T +B.1.177.12 371 C241T,C3037T,C14408T,A23403G > > > > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > > C27944T > > > G204T > C21614T > > > G17944T,C24334T,T24814C,C27769T +B.1.1.219 626 C241T,C3037T,C14408T,A23403G > > > > > G28881A,G28882A,G28883C > > > > > > > > > G5572A,A6366T,G11410A,C19488T,G25776T +B.1.1.315 631 C241T,C3037T,C14408T,A23403G > > > > > G28881A,G28882A,G28883C > > > > > > > > > A1163T,T3256C,C5622T,G14202T,G19542T,C19718T,C22388T,C26060T,G29227T,C29466T,A29771G +B.1.177.5 372 C241T,C3037T,C14408T,A23403G > > > > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > > C27944T > > > G204T > C21614T > > > > T24769C,C25460T +B.1.177.7 373 C241T,C3037T,C14408T,A23403G > > > > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > > C27944T > > > G204T > C21614T > > > > > C15480T +B.1.177.8 374 C241T,C3037T,C14408T,A23403G > > > > T445C,C6286T,G21255C,C22227T,C26801G,C28932T,G29645T > > C27944T > > > G204T > C21614T > > > > > G8179T