Mercurial > repos > iuc > varscan_mpileup
diff varscan_mpileup.xml @ 2:d062703d6f13 draft
planemo upload for repository https://github.com/galaxyproject/iuc/tree/master/tools/varscan commit 30867f1f022bed18ba1c3b8dc9c54226890b3a9c
author | iuc |
---|---|
date | Tue, 04 Dec 2018 05:16:18 -0500 |
parents | 1e667badbe87 |
children |
line wrap: on
line diff
--- a/varscan_mpileup.xml Sun Jul 15 09:19:37 2018 -0400 +++ b/varscan_mpileup.xml Tue Dec 04 05:16:18 2018 -0500 @@ -1,9 +1,11 @@ -<tool id="varscan_mpileup" name="VarScan mpileup" version="@VERSION@.0"> +<tool id="varscan_mpileup" name="VarScan mpileup" version="@VERSION@.1"> <description>for variant detection</description> <macros> <import>macros.xml</import> </macros> - <expand macro="requirements" /> + <expand macro="requirements"> + <requirement type="package" version="4.2.1">gawk</requirement> + </expand> <expand macro="stdio" /> <command><![CDATA[ ## Set up samples list file. @@ -74,16 +76,8 @@ </test> </tests> - <help> -**VarScan Overview** - -VarScan_ performs variant detection for massively parallel sequencing data, such as exome, WGS, and transcriptome data. -It calls variants from a mpileup dataset and produces a VCF 4.1. Full documentation is available online_. - -This tool detects variants from pileups. - -.. _VarScan: http://dkoboldt.github.io/varscan/ -.. _online: http://dkoboldt.github.io/varscan/using-varscan.html + <help><![CDATA[ +@HELP_HEADER@ **Input** @@ -96,6 +90,6 @@ VarScan produces a VCF 4.1 dataset as output. - </help> + ]]></help> <expand macro="citations" /> </tool>