# HG changeset patch
# User iuc
# Date 1638656596 0
# Node ID db94eadb92c1620338e931eda9f08cafed046b30
# Parent  e3f170cc4f950d5adb8f76d3e092c001188e69ac
"planemo upload for repository https://github.com/galaxyproject/iuc/tree/master/tools/varscan commit 1232893782204bb041dd6ed46711295cb0bfc03f"

diff -r e3f170cc4f95 -r db94eadb92c1 varscan.py
--- a/varscan.py	Fri Aug 16 15:50:25 2019 -0400
+++ b/varscan.py	Sat Dec 04 22:23:16 2021 +0000
@@ -358,8 +358,7 @@
                 self.call, self.error
             )
         else:
-            msg_header = '{0} failed.\n'
-            'No further information about this error is available.\n\n'.format(
+            msg_header = '{0} failed.\nNo further information about this error is available.\n\n'.format(
                 self.call
             )
         return msg_header + self.message
@@ -1045,8 +1044,8 @@
                         if mmqs_diff > max_mmqs_diff:
                             record.filter.add('MMQSdiff')
                         if (
-                            1 -
-                            alt_stats.avg_clipped_len
+                            1
+                            - alt_stats.avg_clipped_len
                             / ref_stats.avg_clipped_len
                         ) > max_relative_len_diff:
                             record.filter.add('ReadLenDiff')