Mercurial > repos > iuc > varscan_somatic

diff varscan_somatic.xml @ 10:a57606054bd7 draft

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"planemo upload for repository https://github.com/galaxyproject/iuc/tree/master/tools/varscan commit 46018cbdd8b4ca124d5c6230862012b9081d56e4"
author iuc
date Sat, 18 Jan 2020 03:19:29 -0500
parents 4e97191a1ff7
children
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--- a/varscan_somatic.xml	Fri Aug 16 15:49:54 2019 -0400
+++ b/varscan_somatic.xml	Sat Jan 18 03:19:29 2020 -0500
@@ -1,4 +1,4 @@
-<tool id="varscan_somatic" name="VarScan somatic" version="@VERSION@.5">
+<tool id="varscan_somatic" name="VarScan somatic" version="@VERSION@.6">
     <description>Call germline/somatic and LOH variants from tumor-normal sample pairs</description>
     <macros>
         <import>macros.xml</import>
@@ -410,7 +410,7 @@
             </conditional>
             <assert_stderr>
                 <has_line_matching
-                expression=" Min coverage:&#09;2x for Normal, 2x for Tumor" />
+                expression=" *Min coverage:&#09;2x for Normal, 2x for Tumor" />
                 <has_line_matching
                 expression="Min reads2:&#09;1" />
                 <has_line_matching