Mercurial > repos > iuc > varscan_somatic

diff varscan.py @ 11:cf8ffc79db67 draft default tip

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"planemo upload for repository https://github.com/galaxyproject/iuc/tree/master/tools/varscan commit 1232893782204bb041dd6ed46711295cb0bfc03f"
author iuc
date Sat, 04 Dec 2021 22:23:57 +0000
parents 4e97191a1ff7
children
line wrap: on
line diff
--- a/varscan.py	Sat Jan 18 03:19:29 2020 -0500
+++ b/varscan.py	Sat Dec 04 22:23:57 2021 +0000
@@ -358,8 +358,7 @@
                 self.call, self.error
             )
         else:
-            msg_header = '{0} failed.\n'
-            'No further information about this error is available.\n\n'.format(
+            msg_header = '{0} failed.\nNo further information about this error is available.\n\n'.format(
                 self.call
             )
         return msg_header + self.message
@@ -1045,8 +1044,8 @@
                         if mmqs_diff > max_mmqs_diff:
                             record.filter.add('MMQSdiff')
                         if (
-                            1 -
-                            alt_stats.avg_clipped_len
+                            1
+                            - alt_stats.avg_clipped_len
                             / ref_stats.avg_clipped_len
                         ) > max_relative_len_diff:
                             record.filter.add('ReadLenDiff')