Mercurial > repos > iuc > vcf2maf
diff test-data/test1.fa @ 0:2973994fecd6 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vcf2maf commit 30046d5e0df4d80ac687edd03cf44b2afaa04550
author | iuc |
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date | Tue, 28 Jun 2022 21:07:04 +0000 |
parents | |
children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test1.fa Tue Jun 28 21:07:04 2022 +0000 @@ -0,0 +1,168 @@ +>21 dna:chromosome chromosome:GRCh38:21:1:10000:1 REF +CCACAATCATTTTAGGAGAATGGGTTTAAGAAAGGAAAAAAAAAAAAAAGATTTCTGTAT +GCTCTTAAGAGAAAATCTAAAAAATAATGACATGAAAAAGTTGAAAGGAATGGAAAAATA +TGTACCATTAAAAGGAAACCCGACGTATGAATGCCATTATCAGACAAAACAGATTTTTTT +CTTTTTGAGATGGAGTCTCACTCTGTGGCCCAGGCTGGAGTGCAGTGGCACAATCTCTGC +TCACAGCAAGCTCCGCCTCCCAGGTTCATGCCATTCTCCTGCCTCAGCCTCCCAAGTAGC +TGGGACTACAGGCACCCACCACCACACCAGGCTAGTATTTGTATTTTTAGTAGAGACGGG +GTTTCATCGTGTTAGCCAGGATGGTCTCAATCTTCTGACCTCGTGATCTGCCCACCTCAG +CCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCGCCCAGCCAGACAAAACAGATT +TTAAGACAACTAAGAAGTTAACAAGCTGACCCTACAATAAGCATGAAAATTTTGAAAAAG +AATAGGAAAGGAGAACTCACCATAAGAGAAATTGAAACTTGTTATAAAGCTATAGTTGTT +AAAACGGTGTTACTACAGTGGTACATGGACAGATAAATGGACCAATGAAGCAGACCCAGG +CACTGAAAGGAACCTTTTATATGACAGCATGGCACAATCAGTAAGAATAGAGAGGAAATA +GGCCAGGCACGGTGGCTCACGCCTGTAATCCCAGTACTTTGGGAGGCCAAGGCAGGCAGA +TCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGTCAACATGGTGAAACCGCGTCTCTACT +AAAAATACAAAAATTAGCTGGTCGTGGTGGCAGGCACCTGTAATCCCAGCTACTCGGGAG +GCTGAGGCAGGAGAATCACTTGAACCCGGCTAGCGGAGGCTGCAGTGAGCCGAGATCACG +CCATTGCACTCCAGCCTAGGCAACAAGAGTGAAACTCCATCACAAAAAAAAAAGAAAAAG +AGTAGACAGGAAATAAATGGTCCAGAATAACTGCCTATCCTTGTGGAGGAGAGGGTGATT +CAAAATTAGGTCCCTTTCCTCACTCTATATGCAAAAAACAAACTTCAAATAAATTATACA +ATTAAATGTGAAAATCAAGACTTTAAAATAAACAATGCAGTAGGCTGCTTTATAATATCA +AGTTAGGGAAGGCTTTCTTAAATTTCATAAACATAAATCATAGAGGAAAAGATGAACTGT +CTACCTTAAAATTAAAGACGATATAAACAAAATTAAAAGGTAAGCCAGACAAAAGAAATA +TTTGTAGTGACAACGGTTTAACTTTCTTTCTTTCTTTTTTTTTTTTTGAGACGGAATCTC +ACTCTGTCACCCAGGCTGGAGTACACTGGTGCAATCTCAGCTCACTGCAACCTCCACCTC +CCAGGTTCAAGCGATTCTTGTGCCTCAGCCTCCCAAGTAGCTGGGATGACAGGTACGCAC +CACCACACCCAGCTAATTTTTTGTATTTTTAGCAGAGACGGGGTTTCACCATGTTGGCCA +GGCTGGTCTCGAATTCCTGACCTCAGGTGATCCATCTGCCTCAGCCTCCCAAAGTGCTGG +GATTACAGGAGTGAGCCACTGCACCTGGCCCACAAGGGTTTCACTTTCTAAAAATATAAA +GAACTGGCCAGGTGCAATGGCTCACACTTGTAATCCTAGCACTTTGGGAGGGCAAGGAGA +GCAGATCGCTAGAGGCCAGAAGCTGGAGAACAGCCTGGCCAACATGGTGAAACCCCATCT +CTACTTTAAAAATATAAAAATTAGTTGGGTGTGGTGGCACTTGCCTATAATCCCAGCTAC +TTGGCTACTCAGGAGGCCGAGGCAGGGGAATCGCTTGAATCCAGTAGGCAGAGGCTACAG +TGAGCCAAGATCATGCCACTGCACTACAGCTTGGGCAACAGAGTGAGACTTGGTCTCAAA +AAAAAAAAAAATTATATATATATATCTTATATATATACACTATTATATATATACACACAC +ACACACACACACACACACACACACACACACACAATTAATATGAGATGCCCAAAAATCCAA +TTGTAAAAAGGGGCAAAGGTTGTAAACTGGTAATTCATAAAAACAAATGAAGAGATGCTT +ATTGGTACTATATGCTCAGTATTAAGCAAATTAAATGAGATAGGATCGTGCATATTCAAC +CAACAAAATATCTGAATGTCTGAAAATAATAAATGTTAATGAGGGAGTGGAGAAAATGGG +AATGCTCATACTGCTGATAGAGAGTAAACTGGTACAACTATTGTGGCAGCCAATTAATAT +TTAGTAAAGCTGAAGATGCATGGTCCACTGTGGTACAGGCCCTGGAGATATTATCAAATG +TGTACACAAAGAAACACGCACAAGGATATTTTCTGCGATACTGTAATACTCAAAAGCCAA +TGACATCCTCAGTGGTCATCAATAAGAAAATGAATTAATGATGGGATTAATCATATAATG +AAATACTATATAGCAGTTGAAATGAATGTACTCTTTACATGTATCAACATGCTATACATA +AAAAACAATGATGAGCAATAAAAGCAAATTGCAAAAGGATATATATTATGAAACCAATTA +TGTTTAGTTTTAAAACACAGAGAATACTATGGATTGTAGTAAAAAAAAATATAAAATCAT +GAAGAGTAAGGACAGGTACAAACAGGATAGTGGTTCTTCTTGAGAGGAAGGAAATGACAT +AACAAGACCTTCAATGGATGTGCAGCTTTTCCTTTATTTAAACACAAAAGGATCTGAAGG +AAATAAGGAAAAAGGTTGACAGTGGTTACAATTAAATAGTGGCTGTATGTCAACACTCTT +GGTTACAAACAACAGGATCTACACTAGCTAGTTTAAACAAACAGAATAAAATGGCTCACA +AGTCACAGGCGTGGAGGTCAGGACTACGGAGCCCCCAAAAATGCCCATTTTTATACCTTG +GAGCAGCTGCGGGGGAAAAACTGCTAAGCAAAGCCTCCACACCTTGCACCATTACATGGG +ACCTCTGCCACTGCTGCCTTGAAAACCACATCACTGCTCCGTTCAACAAAATGTATCTCA +TACTACTCTTGTCTGCAAAGTACTTGCTTCCAGATTTCACACAGTTATGTCTAATTGGTG +AGCCCATGCTACCTGTCTGAGCCACAGCTGCAAGGAAGGGCAGGAGATTAAATTTCATTC +TTCTACTGGGTAAGGCGAGATCCACAGAGTGGGAAGTTGCCAAAAAGCAGGTGTTCAAAC +AGTGCTAGCTGCCCAAAAAGCACGAAAAGTGCCCACTCAAACAAGAGTTGGTGAAAATAT +TCTCTCTACTTTTCTGTATGCTCAAATATTTCACAATTTTTTTAAAGAAAAAATGTCGAA +GTATGTAAATTCACAAACAACAAAGGGAATGGAAAAAAAATCAATAAACAAGAGACGTCA +ACCAAATTCTAAAAGACAAAAAGCTAAGTGACTAATAAAACACTAGAGAATGTCACCACC +TAGAAAACATGTGGAGGAAGTTCCATCAGAGGCAGCCAACCGGCCCAGCTGGGCCTTAGC +TCAGAGGCAGCAAAAGTTCATAGATGATAGAAGACAGTAGAGGGATTAGTTAAATCTAAA +CTAATTAAAAAGAAAGGAATTAATTAAAGGTCTGTATACAAACTGGTTGAACACTACCCC +ATCTTCAAATATAGAAGGGCCTAAATCCAGGAAGTGCCCCATGCAAAATATTGAAGGGAT +CTTTATTATAAAGTAAGTGAAAGAACAGTCTGGGTAAAACTAGGATAGTCAATTTAGAAA +TCGGTAGCCAAGACAAGACCTCTTCATTCTAGCATTTTAAAAACCCTCATCCTACCAGCC +AGATTTACCTACTTATCCTTAGTGATGCTTATGAGAAGCCAAACCTTCCTCAAACCACAG +AGCTGCCACTCAACCTCCCTACATCCACATCTTCAACTACAAACTGACAGCCAACAAACG +TAAGACATTTGAAAAAAGCCTGAAACATGTAGATGAAAGACTAAGAAAAAAATCTGTCAC +TGGAGAAAAGAGATGATTCAGGGACTAGAAAGTGAATGAAGAAATGAATAAAAATTATAT +TGATATCTTCAGAGAGCTTCATGAAAATACTTCACATCCAGAAAACATGAAAAGGATTCT +ATGAAACAGAAGCAAAAGAGAGCTTTCAGAAATTAAAATATGCTTGACATAATGTGAGTA +AAATATAAATGCAGGAAAAATAATAGAGAAAGGGAAAAAAATACAGAGGACCAATACAGA +CGATGCAAATACAGCTGAAAGGTATTAGAGAAACAAAGAACCTCCAGAGAAAAGAAAGAA +CAAATAAAGTAAAAAAACATAAAAGAGAGATGTCAAAAATTGAAAGGATCGCCTACGTAC +CAAGCAGAATAACTGACTGAAGACCTAGATACAGGTACAGGATTGTCGAATTTTACAACA +CCAAGAATAATAAGATCCTAAGTGTCCAGAGTGTGTTGAGAGAAGGGGATGCAGAGAACA +GGTTATATAAAAAAGGAACAAGAATCAGACTGGCATCAGACCTTTCATTAGCAAAATCAG +ATGCCAGAAAATAACTGAGCTGCTTTCAAAGTTCTAAGAGAAAACTACTTTTCAATCTAG +AATTCTGTATCTAGCTGAATAGTTCATCAAATGTAAGCGCATAACCCACTTTAGACATGC +AATGGCTCACCTCTTAGACATTTTTTCCTAGAAAGGAGCTTAGAGACAAATGCTAGCAAA +ATGAGAAAGTTAATCAAGAAACAGGAAGATATGGACTCTAAGAAAAAGTTGACCTCACCC +AGAAAAAAAAAAAAAAAAATACGGCCTTCAGAGGAAGCCTGTGCACAAGATGCAGAAAAC +TTGCTGACAAAGAAGCAGAAACTTTTTGGCAAAATATTTTTGTAAGACTGATAACCAAGG +CTTACTCAAGGTGTGGGGAAACAGGCACTCTTAGACAGTTATTGGGAGTAACACTTGGCA +AAACCTTTGGGAAGCCAGCATCTGGTAGCACCTGACAGTAATTCCACTGCCAGAAATCTA +TTTCTACAGAATTATTTATACGTGAGGCAACATAGAGTAGAACATAAGAGCATGTGAGTG +AAACTACCTCCGTTCAAATTCCCACTTTACCACTTTCAAGCTCTATGCTGTTTCCTCATT +TAAAAAATAGAAACATCTTCTCAACAGGTCACTATGAGGATTATAGAAAAGGTTCCACAC +GTGATGGGCTTCGCACAAGACCCAGCACATGATAAATACTCAGTTAATATTACTTATCTA +CAAACATTTGCCATTTTTGCACAAGGATGTTTACTGTGCCACTGTTCGGCAAAAAACGCA +AGCAAGTATAGTATGGTCCTATTTATGTTTTTTAGAAATTACATTTATATTTGTATGTAT +CTGCCTAGATCTGTAGGAAAAAATAGAGAAAACATGCTAAAGTGTTGCATCCATGGAGCA +GGAAGGGAGTGACCTGTTTTTGTACAGTTTTTACTTAAGCAACATGAAGTGTTTCATACT +TTAGAGAAAAGAAAAAGTAAAGATCACTATCAATCTTGGGGAGAAAGGGTTAATCTGTAT +AAGCACACACAAACATTATATTTAAAACATTTATTTTATTATACATATTTAAATTTTAGA +AAGTTATTAGGTAGATGTACATTCCTCTGTTGCTTTACTTTGATCTTCAGTTACCTGTAA +AAACATGAATAGCTTTACTTTCCTAATAAACACTTTCAGTTTTACCCTTCACCCACCATT +TTAAATCATTCCACAGCCCTCTTATAATGACCCTTTATCTTTCCCCTTAAATAGTAGAAT +AGAAAGTTAGGTAAGAAGAAAGATTTAAAGGCCAAGTAACCAATATAAATTATCAGGTAA +AGAACAATAATTCCATTCAAAAATATAATCTAAGGCATATTATACCTAGGCTTCTCAAGT +TGGCCATTTTACTTTTCAGCCGTAAAACAAAATCATTAGTGTAAGAAAAAACACCTGAAG +TGCTGTAACAAGCTATTTTAAATCAGTTTATTTTCTTTTGGAGTATAATTCCATTTAGAA +TAGAACATATTACAGATTTAGTCTAAATAGATATCTCTATGTCCCTATTTCTATTCTGTG +TCACTCAGACTCATCAAACAGACATGGCTAAATCTGAATTCAACACCCCAAAACCTGTCC +TACCTGCATCATCTATCTTGGTAAAGGGCTCCACCCAGATACCTAAGGACAGCATTCAAG +AATTCACTCTCTTCTTCCTACCTGCATATTCCATCAACAGTCCTACTAATTCAGCCTAAG +TTAACTCTCACAGTCATTCTCCCTATCGCGGCTGAACTTTAGGACCTCATTCTCTTCTAT +CCCCCTAACAGAACTCTTGGCTTAAGTCACAGCTATATCCCATGCTACCCCTAGAATGAG +CTTTTAAACAAGAATAGCTGATCAACAGGTCACTTCCCTACTCAAAATTCTCCAGTTACT +CTCTAGCATCTCAGTGGGGTGGAGGAGGAAAGTCAGGAATGCAAGTTCCACAACACGGGA +CACAAGCCCCTCATATTCTGTTTTTGGACTGACTCTTTACCTATCCTACATGTGACCTGT +ACATTCAAATTCATCTTACATTCATCATGTTCTCTATGTAGGCAAGTGACTTCCTCTGAG +ATAACCTCCAACCCATTTTCCAACAGATTATCTGCATGGTCCACTTTTATTCACCCTTTA +AAATCAGCTTAAGAGACTCCAATTCCTGGAAGCCTTCCTTAAGCAACTCCCCAGCTTGGT +CTGAGTCCTCTTCTTTATGCCAGAGCCCCACATGTACACCTGAACTGTCTGCTTATAAGT +CTAATTATCCAATCAACATTACTTCCCTGAGGCAGCAAGTAAATTTTGTGCATTTTTTTG +TACCTCCAGACCATAACAGTACCTGGCACACAATAAACAATCAGTAAGTCTGTGTTGCAT +CAATGAACCACGTTTAATCTAATCCCTTCAGAAAAGCAAAATGGACAGTAGAAAAAAGCA +ACTAAACCAGAATAAATGTTTGAAAAAATATGTATTGACTAACATCACTAGATATTCTAG +GTAAGACACTGTCTCTGCCGTTTTTCTACATTTTTCATTCCTTTAAAGTGTTCAGTTACT +ACTGCTTCTTTAATTTTCCAAACTATTTCTTTAATATTCTTTAGCTTTTTAAATTTTTTT +TAATTTTACTTAACTCCAAGTAAACATGCTGAACATTTTTTCTTTAGTTTCTTCATCTAA +AATGATCACTGTGACCAACTAAAAAGAGAAAATTACTCCATCCATTCAAAGGTAATTTCT +TCTCATGAGAAAAAAAATTATATAACCCTTACTCAAGAACATTATGGTGAAGTCCCTAAA +CAATAATTCCTATCTACATAGTCATTAATAAAGACTAGGTTTATATATCATTATGAAAAA +TTGTCAATAAATATTTCTTGGGTAACCCCTTCATGTGCTAATGTTGTGTTCAAAATTTGG +GCTTACACAAATATAACAAATCCTGAAAGGCTTAACAGACAGAAAATAAATGTACTGGCA +AAGAAAACAATCAAAAAATAGTATGTGGACATATACAATCAAGCACAAACTTATATGAAT +AATTATTTGTTAGAGATTACTCTGAGACTGTTCCATGGAGGAGGTACGACTCAGGCGAGG +TAGTGAAGAATGACTGCGTAGTAAATAGAAGGAGAATGGGAAATGGAGTCTAGAAAGAAA +AACTATCATGAAGAAATAAGCAAACTTGAAAATAAGTTTAATGTGTGATGCTTAATGTGC +CTGCAAGCTTAACCAGTGTTTGTGGCATTGTGGGAAATTAGGATAAGGAGGAAGTCCTAA +TGAGGACAGATTACACAGGACAGCTATCAGATAACCTAAGTAAAAGAGGCACACTTAGCC +TATGAAATAGGAAACAGGAATAGTTGTGGTCAAGAAATACAATCACCCGGGCCGGGCGCG +GTGGCTCACGCCTGTAATCCCAGCACCTTGGGAGGCTGAGGGGGGTGGATCACGAGGTCA +GGAGATCGAGACCATCCTGGCTAACACGGTAAAACCCTGTCTCTACTAAAAATACAAAAA +AATTAGTTGGACGTAGTGGTGGGCACCCATAGTCCCAGCTACTTGGGAGGCTGAGGCACG +AGAATCGCTTGAGCCCGGGAGGTGGAGGTTGCAGTGAGCTGAGATCGCGCCACTGCACTC +CAGCCTGGGAGACAGAACAAGACTCTGTCTCAAAAAAAAAAAGAAAAGAAATACTATCAT +TCCTACTCATTAAGTCTAAATGCTAATGACAAAGAATAAACTACAAAAACACAAACATTC +AAATCTGGTTTTTCAGGACATTAGGATATTTGCACATTTACTGTTAATGGCTAAAGGCGG +CTTTAAAATACACCTGACAAATCTTAATCCTCTAAATATTCATTAAGTTTACAAAATAAA +TCCTAAGACCTAACTGATACCATTACAACTATTAAGAACTATTACTATTACATAGTAATA +TTCTTATTTCTCTTCAAGTTCTACAATATCATTTTCACGATATTAACAAATAAAATCAAA +AGAGAACTGCCAAGTTACAACTTTACCCTTACCAACACACTAGTGAACAATCACAACACT +GCTTTGACTATTGAGACAACTTACTTTTTTCCTTTCTCTTTGTTTCTTTCATTTTTCCCC +CCTTTGGTTGTTATTGGTTAATTTTGATGAATTTCTTTATAGAAGAGTACTCAATAGCTG +TCAAAAACACTTACCATTTTCCGAGATCTTTCCAATAGCTTATCCCATATTGTAAAATGT +GCCTTGAAAAGAAAAGATTTGCGATGAACTAAATGAAGCAGTAATGTCAAAGTAAAAAGG +ACAGAGTCTTTATATAGCTTTTAGAACAAAATAAATAAAAAGCTAGGCAGTACTAATTTA +GATAAGTGGTTATAAAAGTGGATCATAGTAGCAAAAAAAGGTGCTACATGGGGATAGCTG +CTTTTTTGCTTTCTTCAATCGCATGAACCCGGGAGGCAGAGGTTGCAGTGAGCATTTAAG +AAAAAAACGCTTAAGGATTGAACGTGCCCTTCTTTCACTTTTGCCCATCTTAATCATTTC +CATCATAGAAAGCATTTCTTCTAATAGGAAGCAAAAATCTGCCCTACTTTCCCATAGACT +GTGGTTCAATCCTTAAACAGCCAGTTTCAACATTCTAGAAGTCATTCTTCAAATCATAAG +CAATCACAAGAAGACAGTCATTAAAAACCAACTGTGACATCTTCACACTGAAATGGCAGA +AGCAGAGGATTCATCAAGTTACCCTAAAGAATAAGTAAAACCTAACAAAGACAATAGTAA +ATTTTTTTTTTTTTTGAAATGGAGTTTCACTCTGTCGCCCAGGCTGGAGTGCAGTGGTGC +GATCTCAGCTCACTGCAACCTCCGCCTCCCAGGTTCAAGCAATTCTCCTGCCTCAGCCTC +CCAAGACAATAGTAAAATTTAAACTCAATTTCCTTAGTCCATAACAACCTCCTGTAGCAG +AGGATTATCAGAATGCATTAAAGAAAACTGTGCAAAGTGTATCATGACCACATCAATTTT +ATTAGGTCAACTGAAAGTGGTAACAAGACATATGGGCAGGCCAGTGACTACTCCACACTG +AATGAGCTCATAAAATCTATAATAAAAGGTAAAATTAATAAATATCAACATACAAACCCT +TCCAGGGAAAGAGCTGACTGGTATGTTTAAAGGGAAAACCATGCCTGACTCAGGCGGAAT +GAACTGCTGGTGCAGAGACCTTAAGCTGTGGCTGGAATATAGTGAGTGAGGAAAGGAGTG +GTGTTAGATAAAGTCAGAGAAGCAGGCAGGGACCAGATAATGCAGGGCTTTGTGAGACAG +GGTAAAGAGTTGGGATTTGTTCAAGGGAAGCCATTGGAAA