Mercurial > repos > iuc > vegan_diversity

comparison vegan_diversity.xml @ 1:2c771b437502 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vegan/vegan_diversity commit 55b5863db6c3e6cf443917117ec362a8daad8122
author iuc
date Mon, 08 Feb 2016 15:24:29 -0500
parents c58e19ff504a
children db56c8e79b1e
comparison
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0:c58e19ff504a 1:2c771b437502
1 <tool id="vegan_diversity" name="Vegan Diversity" version="0.0.2"> 1 <tool id="vegan_diversity" name="Vegan Diversity" version="0.0.3">
2 <description> 2 <description>
3 index 3 index
4 </description> 4 </description>
5 <macros> 5 <macros>
6 <import>vegan_macros.xml</import> 6 <import>vegan_macros.xml</import>
15 <configfiles> 15 <configfiles>
16 <configfile name="vegan_diversity_script"><![CDATA[ 16 <configfile name="vegan_diversity_script"><![CDATA[
17 @RSCRIPT_PREAMBLE@ 17 @RSCRIPT_PREAMBLE@
18 @RSCRIPT_LOAD_TABULAR_FILE@ 18 @RSCRIPT_LOAD_TABULAR_FILE@
19 19
20 write.table( diversity(input_abundance, index = "${index_type.index_type_selector}", MARGIN = ${index_type.margin}, base = ${index_type.base}), "${output_diversity_index}", col.names=NA, sep = "\t") 20 write.table( diversity(input_abundance, index = "${index_type.index_type_selector}", MARGIN = ${index_type.margin}, base = ${index_type.base}), "${output_diversity_index}", quote=FALSE, col.names=NA, sep = "\t")
21 ]]> 21 ]]>
22 </configfile> 22 </configfile>
23 </configfiles> 23 </configfiles>
24 <inputs> 24 <inputs>
25 <expand macro="params_load_tabular_file" /> 25 <expand macro="params_load_tabular_file" />