Mercurial > repos > iuc > vegan_diversity

changeset 2:db56c8e79b1e draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vegan/vegan_diversity commit bfa8bda732de882f6fa5f5375f8468ad229cceea
author iuc
date Mon, 07 Nov 2016 17:43:22 -0500
parents 2c771b437502
children a2c047a2c380
files test-data/output_diversity_index.tabular tool_dependencies.xml vegan_diversity.xml vegan_macros.xml
diffstat 4 files changed, 7 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/test-data/output_diversity_index.tabular	Mon Feb 08 15:24:29 2016 -0500
+++ b/test-data/output_diversity_index.tabular	Mon Nov 07 17:43:22 2016 -0500
@@ -1,2 +1,2 @@
 	x
-1	1.58148247996845
+1	1.020620870138
--- a/tool_dependencies.xml	Mon Feb 08 15:24:29 2016 -0500
+++ b/tool_dependencies.xml	Mon Nov 07 17:43:22 2016 -0500
@@ -4,6 +4,6 @@
         <repository changeset_revision="1ab514ba46e7" name="package_r_vegan_2_3_0" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
     </package>
     <package name="R" version="3.2.1">
-        <repository changeset_revision="d0bf97420fb5" name="package_r_3_2_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="d9f7d84125b7" name="package_r_3_2_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
     </package>
 </tool_dependency>
--- a/vegan_diversity.xml	Mon Feb 08 15:24:29 2016 -0500
+++ b/vegan_diversity.xml	Mon Nov 07 17:43:22 2016 -0500
@@ -8,7 +8,8 @@
     <expand macro="requirements" />
     <expand macro="stdio" />
     <expand macro="version_command" />
-    <command><![CDATA[
+    <command>
+    <![CDATA[
         Rscript "${vegan_diversity_script}"
     ]]>
     </command>
@@ -73,4 +74,4 @@
     </help>
     <citations>
     </citations>
-</tool>
\ No newline at end of file
+</tool>
--- a/vegan_macros.xml	Mon Feb 08 15:24:29 2016 -0500
+++ b/vegan_macros.xml	Mon Nov 07 17:43:22 2016 -0500
@@ -3,6 +3,8 @@
         <requirements>
             <requirement type="package" version="3.2.1">R</requirement>
             <requirement type="package" version="2.3-0">vegan</requirement>
+            <!-- Conda dependency -->
+            <requirement type="package" version="2.3_0">r-vegan</requirement>
             <yield />
         </requirements>
     </xml>