Mercurial > repos > iuc > vegan_fisher_alpha

comparison vegan_fisher_alpha.xml @ 3:0148e5cf20b2 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vegan/ commit f93edebf6c946402f105f0622aacb0baa216a70c
author iuc
date Fri, 15 Mar 2024 15:26:28 +0000
parents f9966e11885b
children
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2:f9966e11885b 3:0148e5cf20b2
3 index 3 index
4 </description> 4 </description>
5 <macros> 5 <macros>
6 <import>macros.xml</import> 6 <import>macros.xml</import>
7 </macros> 7 </macros>
8 <expand macro="bio.tools_xrefs" />
8 <expand macro="requirements" /> 9 <expand macro="requirements" />
9 <expand macro="stdio" /> 10 <expand macro="stdio" />
10 <expand macro="version_command" /> 11 <expand macro="version_command" />
11 <command><![CDATA[ 12 <command><![CDATA[
12 Rscript "${vegan_fisher_alpha_script}" 13 Rscript "${vegan_fisher_alpha_script}"
27 </inputs> 28 </inputs>
28 <outputs> 29 <outputs>
29 <data format="tabular" name="output_fisher_alpha" /> 30 <data format="tabular" name="output_fisher_alpha" />
30 </outputs> 31 </outputs>
31 <tests> 32 <tests>
32 <test> 33 <test expect_num_outputs="1">
33 <param name="input_abundance" ftype="tabular" value="vegan_in.tabular"/> 34 <param name="input_abundance" ftype="tabular" value="vegan_in.tabular"/>
34 <param name="species_column" value="6"/> 35 <param name="species_column" value="6"/>
35 <param name="sample_columns" value="2"/> 36 <param name="sample_columns" value="2"/>
36 <param name="margin" value="1"/> 37 <param name="margin" value="1"/>
37 <output name="output_fisher_alpha" ftype="tabular" file="output_fisher_alpha.tabular" /> 38 <output name="output_fisher_alpha" ftype="tabular" file="output_fisher_alpha.tabular" />
40 <help> 41 <help>
41 <![CDATA[ 42 <![CDATA[
42 Calculate Diversity index using vegan and selected method. 43 Calculate Diversity index using vegan and selected method.
43 ]]> 44 ]]>
44 </help> 45 </help>
45 <citations> 46 <expand macro="citations" />
46 </citations>
47 </tool> 47 </tool>