Mercurial > repos > iuc > vegan_rarefaction

diff vegan_rarefaction.xml @ 3:af1211ed6c8e draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vegan/ commit f93edebf6c946402f105f0622aacb0baa216a70c
author iuc
date Fri, 15 Mar 2024 15:26:48 +0000
parents b0d5976540e3
children
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--- a/vegan_rarefaction.xml	Fri Sep 07 11:31:02 2018 -0400
+++ b/vegan_rarefaction.xml	Fri Mar 15 15:26:48 2024 +0000
@@ -5,6 +5,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="bio.tools_xrefs" />
     <expand macro="requirements" />
     <expand macro="stdio" />
     <expand macro="version_command" />
@@ -109,7 +110,7 @@
         </data>
     </outputs>
     <tests>
-        <test>
+        <test expect_num_outputs="7">
             <param name="input_abundance" ftype="tabular" value="vegan_in.tabular"/>
             <param name="species_column" value="6"/>
             <param name="sample_columns" value="2"/>
@@ -123,6 +124,8 @@
             <output name="output_richness" ftype="tabular" file="vegan_output_richness.tabular" />
             <output name="output_species_probabilities" ftype="tabular" file="vegan_output_species_probabilities.tabular" />
             <output name="output_slope" ftype="tabular" file="vegan_output_slope.tabular" />
+            <output name="output_plot" ftype="png" file="vegan_output_plot.png"  compare="sim_size" />
+            <output name="output_random_rarefied" ftype="tabular" file="vegan_output_random_rarefied.tabular" />
         </test>
     </tests>
     <help>
@@ -140,6 +143,5 @@
 When subsampling by community size, slope of the rarefaction curve and species probabilities are computed using community size-1
         ]]>
     </help>
-    <citations>
-    </citations>
+    <expand macro="citations" />
 </tool>