Mercurial > repos > iuc > vegan_rarefaction
diff vegan_rarefaction.xml @ 2:b0d5976540e3 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vegan/ commit e0cd7ae10ce97bed51594e7cc0b969a803d698b7
author | iuc |
---|---|
date | Fri, 07 Sep 2018 11:31:02 -0400 |
parents | dd2705a31239 |
children | af1211ed6c8e |
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--- a/vegan_rarefaction.xml Mon Feb 08 15:24:42 2016 -0500 +++ b/vegan_rarefaction.xml Fri Sep 07 11:31:02 2018 -0400 @@ -1,9 +1,9 @@ -<tool id="vegan_rarefaction" name="Vegan Rarefaction" version="0.0.3"> +<tool id="vegan_rarefaction" name="Vegan Rarefaction" version="@TOOL_VERSION@"> <description> curve and statistics </description> <macros> - <import>vegan_macros.xml</import> + <import>macros.xml</import> </macros> <expand macro="requirements" /> <expand macro="stdio" /> @@ -127,11 +127,11 @@ </tests> <help> <![CDATA[ - + Gives the expected species richness in random subsamples of size sample from the community. The size of sample should be smaller than total community size, but the function will work for larger sample as well (with a warning) and return non-rarefied species richness (and standard error = 0). Rarefaction can be performed only with genuine counts of individuals. The function rarefy is based on Hurlbert’s (1971) formulation, and the standard errors on Heck et al. (1975). - + Returns probabilities that species occur in a rarefied community of size sample. - + Draws a rarefaction curve for each row of the input data. The rarefaction curves are evaluated using the interval of step sample sizes, always including 1 and total sample size. If sample is specified, a vertical line is drawn at sample with horizontal lines for the rarefied species richnesses. @@ -142,4 +142,4 @@ </help> <citations> </citations> -</tool> \ No newline at end of file +</tool>