Mercurial > repos > iuc > velocyto_cli
diff velocyto_cli.xml @ 3:f66590d0d3af draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/velocyto commit b12efa10c543d2783274da8b47853297c8255906
| author | iuc |
|---|---|
| date | Fri, 18 Jul 2025 07:45:12 +0000 |
| parents | 90e95e9ee190 |
| children |
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--- a/velocyto_cli.xml Wed Dec 20 18:03:30 2023 +0000 +++ b/velocyto_cli.xml Fri Jul 18 07:45:12 2025 +0000 @@ -1,9 +1,10 @@ -<tool id="velocyto_cli" name="velocyto CLI" version="@VERSION@+galaxy2"> +<tool id="velocyto_cli" name="velocyto CLI" version="@VERSION@+galaxy3"> <description>pre-process data for the analysis of RNA velocity</description> <macros> <import>macros.xml</import> </macros> <expand macro="edam"/> + <expand macro="xrefs"/> <expand macro="requirements"/> <stdio> <!-- Anything other than zero is an error --> @@ -48,7 +49,7 @@ -b '$main.b' #end if #if str($main.m) != 'None': - -m '$main.m' + -m '$main.m' #end if $main.c $main.U @@ -68,7 +69,7 @@ -s '$main.s' #end if #if str($main.m) != 'None': - -m '$main.m' + -m '$main.m' #end if $main.M -t '$main.t' @@ -82,7 +83,7 @@ run-smartseq2 @LOOMOUT@ #if str($main.m) != 'None': - -m '$main.m' + -m '$main.m' #end if -t '$main.t' @SAMTOOLS_OPTS@ @@ -97,7 +98,7 @@ -b '$main.b' #end if #if str($main.m) != 'None': - -m '$main.m' + -m '$main.m' #end if -t '$main.t' @SAMTOOLS_OPTS@ @@ -185,7 +186,7 @@ <expand macro="loomdtype" token_16_selected="false" token_32_selected="true" /> </when> <when value="dropest-bc-correct" > - <param name="bamfile" type="data" format="BAM" + <param name="bamfile" type="data" format="bam" label="Bam file with sorted reads obtained from DropEst" /> <param name="rfile" type="data" format="rds" label="R dump RDS file generated from DropEst" />