diff macros.xml @ 0:fc30c955f2ac draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/vgp_processcuration commit c25e877636f68656a0005883efb0f03b5ffd6b0c
author iuc
date Wed, 07 Jan 2026 12:48:27 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/macros.xml	Wed Jan 07 12:48:27 2026 +0000
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+<macros>
+    <xml name="requirements">
+        <requirements>
+            <requirement type="package" version="@TOOL_VERSION@">vgp-processcuration</requirement>
+            <yield/>
+        </requirements>
+    </xml>
+    <token name="@TOOL_VERSION@">1.0</token>
+    <token name="@PROFILE@">21.09</token>
+    <xml name="edam_ontology">
+        <edam_topics>
+            <edam_topic>topic_0622</edam_topic> <!-- Genomics -->
+            <edam_topic>topic_3797</edam_topic> <!-- Genome assembly -->
+        </edam_topics>
+    </xml>
+    <xml name="xrefs">
+        <xrefs>
+            <xref type="bio.tools">vgp-processcuration</xref>
+        </xrefs>
+    </xml>
+    <xml name="citations">
+        <citations>
+            <citation type="bibtex">
+@misc{vgl_curation,
+    author = {VGL-Hub},
+    title = {VGL Curation - ProcessCuration toolkit for genome assembly submission},
+    year = {2025},
+    url = {https://github.com/vgl-hub/vgl-curation},
+}
+            </citation>
+        </citations>
+    </xml>
+    <xml name="help_common">
+        <![CDATA[
+**About ProcessCuration**
+
+ProcessCuration is a Python-based toolkit designed to process manually curated genome assemblies for submission.
+It reconciles AGP files (A Golden Path) created in PretextView with genome assembly FASTAs, preparing them for
+database submission through renaming, reorienting, and sorting operations.
+
+The toolkit is part of the VGP (Vertebrate Genomes Project) curation pipeline and works in conjunction with
+tools like gfastats and MashMap.
+
+**Input Naming Convention**
+
+Scaffolds must follow the naming pattern before curation:
+- Haplotype 1: H1.scaffold_X
+- Haplotype 2: H2.scaffold_X
+
+**More Information**
+
+- GitHub repository: https://github.com/vgl-hub/vgl-curation
+- VGP Genome Assembly Pipeline: https://vertebrategenomesproject.org/
+        ]]>
+    </xml>
+</macros>