Mercurial > repos > iuc > virannot_blast2tsv
comparison test-data/blast2tsv_input.xml @ 2:77c3ef9b0ed7 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit ab5e1189217b6ed5f1c5d7c5ff6b79b6a4c18cff
author | iuc |
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date | Wed, 21 Aug 2024 13:13:39 +0000 |
parents | e889010415a1 |
children |
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1:88ebde55bef8 | 2:77c3ef9b0ed7 |
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1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
2 <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd"> | 2 <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd"> |
3 <BlastOutput> | 3 <BlastOutput> |
4 <BlastOutput_program>tblastx</BlastOutput_program> | 4 <BlastOutput_program>rpstblastn</BlastOutput_program> |
5 <BlastOutput_version>TBLASTX 2.10.1+</BlastOutput_version> | 5 <BlastOutput_version>RPSTBLASTN 2.14.1+</BlastOutput_version> |
6 <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference> | 6 <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference> |
7 <BlastOutput_db>/save/tcandresse/refseq/refseq.short.fa</BlastOutput_db> | 7 <BlastOutput_db>/data/db/databases/blast/2018-01-22/pfam/Pfam</BlastOutput_db> |
8 <BlastOutput_query-ID>ds2020-482-EDGG-1-Q4_42600</BlastOutput_query-ID> | 8 <BlastOutput_query-ID>Query_1</BlastOutput_query-ID> |
9 <BlastOutput_query-def>No definition line</BlastOutput_query-def> | 9 <BlastOutput_query-def>NODE_1_length_506_cov_10.687361</BlastOutput_query-def> |
10 <BlastOutput_query-len>96</BlastOutput_query-len> | 10 <BlastOutput_query-len>506</BlastOutput_query-len> |
11 <BlastOutput_param> | 11 <BlastOutput_param> |
12 <Parameters> | 12 <Parameters> |
13 <Parameters_matrix>BLOSUM62</Parameters_matrix> | 13 <Parameters_matrix>BLOSUM62</Parameters_matrix> |
14 <Parameters_expect>0.001</Parameters_expect> | 14 <Parameters_expect>0.0001</Parameters_expect> |
15 <Parameters_gap-open>11</Parameters_gap-open> | 15 <Parameters_gap-open>11</Parameters_gap-open> |
16 <Parameters_gap-extend>1</Parameters_gap-extend> | 16 <Parameters_gap-extend>1</Parameters_gap-extend> |
17 <Parameters_filter>L;</Parameters_filter> | 17 <Parameters_filter>F</Parameters_filter> |
18 </Parameters> | 18 </Parameters> |
19 </BlastOutput_param> | 19 </BlastOutput_param> |
20 <BlastOutput_iterations> | 20 <BlastOutput_iterations> |
21 <Iteration> | 21 <Iteration> |
22 <Iteration_iter-num>1</Iteration_iter-num> | 22 <Iteration_iter-num>1</Iteration_iter-num> |
23 <Iteration_query-ID>ds2020-482-EDGG-1-Q4_42600</Iteration_query-ID> | 23 <Iteration_query-ID>Query_1</Iteration_query-ID> |
24 <Iteration_query-def>No definition line</Iteration_query-def> | 24 <Iteration_query-def>NODE_1_length_506_cov_10.687361</Iteration_query-def> |
25 <Iteration_query-len>96</Iteration_query-len> | 25 <Iteration_query-len>506</Iteration_query-len> |
26 <Iteration_hits> | |
27 </Iteration_hits> | |
28 <Iteration_stat> | |
29 <Statistics> | |
30 <Statistics_db-num>16305</Statistics_db-num> | |
31 <Statistics_db-len>2821655</Statistics_db-len> | |
32 <Statistics_hsp-len>80</Statistics_hsp-len> | |
33 <Statistics_eff-space>133518440</Statistics_eff-space> | |
34 <Statistics_kappa>0.083353464</Statistics_kappa> | |
35 <Statistics_lambda>0.267</Statistics_lambda> | |
36 <Statistics_entropy>0.14</Statistics_entropy> | |
37 </Statistics> | |
38 </Iteration_stat> | |
39 <Iteration_message>No hits found</Iteration_message> | |
40 </Iteration> | |
41 <Iteration> | |
42 <Iteration_iter-num>2</Iteration_iter-num> | |
43 <Iteration_query-ID>Query_2</Iteration_query-ID> | |
44 <Iteration_query-def>NODE_2_length_429_cov_3.631016</Iteration_query-def> | |
45 <Iteration_query-len>429</Iteration_query-len> | |
46 <Iteration_hits> | |
47 </Iteration_hits> | |
48 <Iteration_stat> | |
49 <Statistics> | |
50 <Statistics_db-num>16305</Statistics_db-num> | |
51 <Statistics_db-len>2821655</Statistics_db-len> | |
52 <Statistics_hsp-len>78</Statistics_hsp-len> | |
53 <Statistics_eff-space>100741225</Statistics_eff-space> | |
54 <Statistics_kappa>0.041</Statistics_kappa> | |
55 <Statistics_lambda>0.267</Statistics_lambda> | |
56 <Statistics_entropy>0.14</Statistics_entropy> | |
57 </Statistics> | |
58 </Iteration_stat> | |
59 <Iteration_message>No hits found</Iteration_message> | |
60 </Iteration> | |
61 <Iteration> | |
62 <Iteration_iter-num>3</Iteration_iter-num> | |
63 <Iteration_query-ID>Query_3</Iteration_query-ID> | |
64 <Iteration_query-def>NODE_3_length_365_cov_1.074194</Iteration_query-def> | |
65 <Iteration_query-len>365</Iteration_query-len> | |
66 <Iteration_hits> | |
67 </Iteration_hits> | |
68 <Iteration_stat> | |
69 <Statistics> | |
70 <Statistics_db-num>16305</Statistics_db-num> | |
71 <Statistics_db-len>2821655</Statistics_db-len> | |
72 <Statistics_hsp-len>75</Statistics_hsp-len> | |
73 <Statistics_eff-space>73543880</Statistics_eff-space> | |
74 <Statistics_kappa>0.041</Statistics_kappa> | |
75 <Statistics_lambda>0.267</Statistics_lambda> | |
76 <Statistics_entropy>0.14</Statistics_entropy> | |
77 </Statistics> | |
78 </Iteration_stat> | |
79 <Iteration_message>No hits found</Iteration_message> | |
80 </Iteration> | |
81 <Iteration> | |
82 <Iteration_iter-num>4</Iteration_iter-num> | |
83 <Iteration_query-ID>Query_4</Iteration_query-ID> | |
84 <Iteration_query-def>NODE_4_length_351_cov_1.547297</Iteration_query-def> | |
85 <Iteration_query-len>351</Iteration_query-len> | |
86 <Iteration_hits> | |
87 </Iteration_hits> | |
88 <Iteration_stat> | |
89 <Statistics> | |
90 <Statistics_db-num>16305</Statistics_db-num> | |
91 <Statistics_db-len>2821655</Statistics_db-len> | |
92 <Statistics_hsp-len>74</Statistics_hsp-len> | |
93 <Statistics_eff-space>69448655</Statistics_eff-space> | |
94 <Statistics_kappa>0.041</Statistics_kappa> | |
95 <Statistics_lambda>0.267</Statistics_lambda> | |
96 <Statistics_entropy>0.14</Statistics_entropy> | |
97 </Statistics> | |
98 </Iteration_stat> | |
99 <Iteration_message>No hits found</Iteration_message> | |
100 </Iteration> | |
101 <Iteration> | |
102 <Iteration_iter-num>5</Iteration_iter-num> | |
103 <Iteration_query-ID>Query_5</Iteration_query-ID> | |
104 <Iteration_query-def>NODE_5_length_344_cov_3.273356</Iteration_query-def> | |
105 <Iteration_query-len>344</Iteration_query-len> | |
106 <Iteration_hits> | |
107 </Iteration_hits> | |
108 <Iteration_stat> | |
109 <Statistics> | |
110 <Statistics_db-num>16305</Statistics_db-num> | |
111 <Statistics_db-len>2821655</Statistics_db-len> | |
112 <Statistics_hsp-len>72</Statistics_hsp-len> | |
113 <Statistics_eff-space>69203190</Statistics_eff-space> | |
114 <Statistics_kappa>0.041</Statistics_kappa> | |
115 <Statistics_lambda>0.267</Statistics_lambda> | |
116 <Statistics_entropy>0.14</Statistics_entropy> | |
117 </Statistics> | |
118 </Iteration_stat> | |
119 <Iteration_message>No hits found</Iteration_message> | |
120 </Iteration> | |
121 <Iteration> | |
122 <Iteration_iter-num>6</Iteration_iter-num> | |
123 <Iteration_query-ID>Query_6</Iteration_query-ID> | |
124 <Iteration_query-def>NODE_6_length_338_cov_1.314488</Iteration_query-def> | |
125 <Iteration_query-len>338</Iteration_query-len> | |
126 <Iteration_hits> | |
127 </Iteration_hits> | |
128 <Iteration_stat> | |
129 <Statistics> | |
130 <Statistics_db-num>16305</Statistics_db-num> | |
131 <Statistics_db-len>2821655</Statistics_db-len> | |
132 <Statistics_hsp-len>70</Statistics_hsp-len> | |
133 <Statistics_eff-space>70572810</Statistics_eff-space> | |
134 <Statistics_kappa>0.041</Statistics_kappa> | |
135 <Statistics_lambda>0.267</Statistics_lambda> | |
136 <Statistics_entropy>0.14</Statistics_entropy> | |
137 </Statistics> | |
138 </Iteration_stat> | |
139 <Iteration_message>No hits found</Iteration_message> | |
140 </Iteration> | |
141 <Iteration> | |
142 <Iteration_iter-num>7</Iteration_iter-num> | |
143 <Iteration_query-ID>Query_7</Iteration_query-ID> | |
144 <Iteration_query-def>NODE_7_length_335_cov_1.714286</Iteration_query-def> | |
145 <Iteration_query-len>335</Iteration_query-len> | |
146 <Iteration_hits> | |
147 </Iteration_hits> | |
148 <Iteration_stat> | |
149 <Statistics> | |
150 <Statistics_db-num>16305</Statistics_db-num> | |
151 <Statistics_db-len>2821655</Statistics_db-len> | |
152 <Statistics_hsp-len>70</Statistics_hsp-len> | |
153 <Statistics_eff-space>68892505</Statistics_eff-space> | |
154 <Statistics_kappa>0.041</Statistics_kappa> | |
155 <Statistics_lambda>0.267</Statistics_lambda> | |
156 <Statistics_entropy>0.14</Statistics_entropy> | |
157 </Statistics> | |
158 </Iteration_stat> | |
159 <Iteration_message>No hits found</Iteration_message> | |
160 </Iteration> | |
161 <Iteration> | |
162 <Iteration_iter-num>8</Iteration_iter-num> | |
163 <Iteration_query-ID>Query_8</Iteration_query-ID> | |
164 <Iteration_query-def>NODE_8_length_331_cov_0.862319</Iteration_query-def> | |
165 <Iteration_query-len>331</Iteration_query-len> | |
166 <Iteration_hits> | |
167 </Iteration_hits> | |
168 <Iteration_stat> | |
169 <Statistics> | |
170 <Statistics_db-num>16305</Statistics_db-num> | |
171 <Statistics_db-len>2821655</Statistics_db-len> | |
172 <Statistics_hsp-len>69</Statistics_hsp-len> | |
173 <Statistics_eff-space>69561010</Statistics_eff-space> | |
174 <Statistics_kappa>0.041</Statistics_kappa> | |
175 <Statistics_lambda>0.267</Statistics_lambda> | |
176 <Statistics_entropy>0.14</Statistics_entropy> | |
177 </Statistics> | |
178 </Iteration_stat> | |
179 <Iteration_message>No hits found</Iteration_message> | |
180 </Iteration> | |
181 <Iteration> | |
182 <Iteration_iter-num>9</Iteration_iter-num> | |
183 <Iteration_query-ID>Query_9</Iteration_query-ID> | |
184 <Iteration_query-def>NODE_9_length_324_cov_2.141264</Iteration_query-def> | |
185 <Iteration_query-len>324</Iteration_query-len> | |
186 <Iteration_hits> | |
187 </Iteration_hits> | |
188 <Iteration_stat> | |
189 <Statistics> | |
190 <Statistics_db-num>16305</Statistics_db-num> | |
191 <Statistics_db-len>2821655</Statistics_db-len> | |
192 <Statistics_hsp-len>67</Statistics_hsp-len> | |
193 <Statistics_eff-space>70898020</Statistics_eff-space> | |
194 <Statistics_kappa>0.041</Statistics_kappa> | |
195 <Statistics_lambda>0.267</Statistics_lambda> | |
196 <Statistics_entropy>0.14</Statistics_entropy> | |
197 </Statistics> | |
198 </Iteration_stat> | |
199 <Iteration_message>No hits found</Iteration_message> | |
200 </Iteration> | |
201 <Iteration> | |
202 <Iteration_iter-num>10</Iteration_iter-num> | |
203 <Iteration_query-ID>Query_10</Iteration_query-ID> | |
204 <Iteration_query-def>NODE_10_length_324_cov_1.371747</Iteration_query-def> | |
205 <Iteration_query-len>324</Iteration_query-len> | |
206 <Iteration_hits> | |
207 </Iteration_hits> | |
208 <Iteration_stat> | |
209 <Statistics> | |
210 <Statistics_db-num>16305</Statistics_db-num> | |
211 <Statistics_db-len>2821655</Statistics_db-len> | |
212 <Statistics_hsp-len>67</Statistics_hsp-len> | |
213 <Statistics_eff-space>70898020</Statistics_eff-space> | |
214 <Statistics_kappa>0.041</Statistics_kappa> | |
215 <Statistics_lambda>0.267</Statistics_lambda> | |
216 <Statistics_entropy>0.14</Statistics_entropy> | |
217 </Statistics> | |
218 </Iteration_stat> | |
219 <Iteration_message>No hits found</Iteration_message> | |
220 </Iteration> | |
221 <Iteration> | |
222 <Iteration_iter-num>11</Iteration_iter-num> | |
223 <Iteration_query-ID>Query_11</Iteration_query-ID> | |
224 <Iteration_query-def>NODE_11_length_317_cov_1.125954</Iteration_query-def> | |
225 <Iteration_query-len>317</Iteration_query-len> | |
226 <Iteration_hits> | |
227 </Iteration_hits> | |
228 <Iteration_stat> | |
229 <Statistics> | |
230 <Statistics_db-num>16305</Statistics_db-num> | |
231 <Statistics_db-len>2821655</Statistics_db-len> | |
232 <Statistics_hsp-len>65</Statistics_hsp-len> | |
233 <Statistics_eff-space>70473200</Statistics_eff-space> | |
234 <Statistics_kappa>0.041</Statistics_kappa> | |
235 <Statistics_lambda>0.267</Statistics_lambda> | |
236 <Statistics_entropy>0.14</Statistics_entropy> | |
237 </Statistics> | |
238 </Iteration_stat> | |
239 <Iteration_message>No hits found</Iteration_message> | |
240 </Iteration> | |
241 <Iteration> | |
242 <Iteration_iter-num>12</Iteration_iter-num> | |
243 <Iteration_query-ID>Query_12</Iteration_query-ID> | |
244 <Iteration_query-def>NODE_12_length_311_cov_1.535156</Iteration_query-def> | |
245 <Iteration_query-len>311</Iteration_query-len> | |
246 <Iteration_hits> | |
247 </Iteration_hits> | |
248 <Iteration_stat> | |
249 <Statistics> | |
250 <Statistics_db-num>16305</Statistics_db-num> | |
251 <Statistics_db-len>2821655</Statistics_db-len> | |
252 <Statistics_hsp-len>64</Statistics_hsp-len> | |
253 <Statistics_eff-space>69347265</Statistics_eff-space> | |
254 <Statistics_kappa>0.041</Statistics_kappa> | |
255 <Statistics_lambda>0.267</Statistics_lambda> | |
256 <Statistics_entropy>0.14</Statistics_entropy> | |
257 </Statistics> | |
258 </Iteration_stat> | |
259 <Iteration_message>No hits found</Iteration_message> | |
260 </Iteration> | |
261 <Iteration> | |
262 <Iteration_iter-num>13</Iteration_iter-num> | |
263 <Iteration_query-ID>Query_13</Iteration_query-ID> | |
264 <Iteration_query-def>NODE_13_length_295_cov_0.945833</Iteration_query-def> | |
265 <Iteration_query-len>295</Iteration_query-len> | |
26 <Iteration_hits> | 266 <Iteration_hits> |
27 <Hit> | 267 <Hit> |
28 <Hit_num>1</Hit_num> | 268 <Hit_num>1</Hit_num> |
29 <Hit_id>ref|NC_035070.1|</Hit_id> | 269 <Hit_id>gnl|CDD|316155</Hit_id> |
30 <Hit_def>Spinach amalgavirus 1 isolate SRP059420 fusion protein and putative coat protein genes, complete cds</Hit_def> | 270 <Hit_def>pfam13603, tRNA-synt_1_2, Leucyl-tRNA synthetase, Domain 2. This is a family of the conserved region of Leucine-tRNA ligase or Leucyl-tRNA synthetase, EC:6.1.1.4.</Hit_def> |
31 <Hit_accession>NC_035070</Hit_accession> | 271 <Hit_accession>316155</Hit_accession> |
32 <Hit_len>3420</Hit_len> | 272 <Hit_len>184</Hit_len> |
33 <Hit_hsps> | 273 <Hit_hsps> |
34 <Hsp> | 274 <Hsp> |
35 <Hsp_num>1</Hsp_num> | 275 <Hsp_num>1</Hsp_num> |
36 <Hsp_bit-score>51.4703</Hsp_bit-score> | 276 <Hsp_bit-score>38.6378</Hsp_bit-score> |
37 <Hsp_score>106</Hsp_score> | 277 <Hsp_score>91</Hsp_score> |
38 <Hsp_evalue>6.20873e-08</Hsp_evalue> | 278 <Hsp_evalue>2.277e-05</Hsp_evalue> |
39 <Hsp_query-from>3</Hsp_query-from> | 279 <Hsp_query-from>159</Hsp_query-from> |
40 <Hsp_query-to>95</Hsp_query-to> | 280 <Hsp_query-to>269</Hsp_query-to> |
41 <Hsp_hit-from>1338</Hsp_hit-from> | 281 <Hsp_hit-from>128</Hsp_hit-from> |
42 <Hsp_hit-to>1430</Hsp_hit-to> | 282 <Hsp_hit-to>168</Hsp_hit-to> |
43 <Hsp_query-frame>3</Hsp_query-frame> | 283 <Hsp_query-frame>3</Hsp_query-frame> |
44 <Hsp_hit-frame>3</Hsp_hit-frame> | 284 <Hsp_hit-frame>0</Hsp_hit-frame> |
45 <Hsp_identity>20</Hsp_identity> | 285 <Hsp_identity>17</Hsp_identity> |
46 <Hsp_positive>24</Hsp_positive> | 286 <Hsp_positive>22</Hsp_positive> |
47 <Hsp_gaps>0</Hsp_gaps> | 287 <Hsp_gaps>4</Hsp_gaps> |
48 <Hsp_align-len>31</Hsp_align-len> | 288 <Hsp_align-len>41</Hsp_align-len> |
49 <Hsp_qseq>GGGTLRTWAADRKMYRGGGSSFDALLLLCQA</Hsp_qseq> | 289 <Hsp_qseq>FIKQYGLPFNPVIAPEDAELTDEQIQSYINTA---NS-FFN</Hsp_qseq> |
50 <Hsp_hseq>GGGAMRSWEVDSQMYRGGGNSADALRLLGQA</Hsp_hseq> | 290 <Hsp_hseq>FAKKYNLPIKPVIKPEDGDLPDIMTEAYTEEGILVNSGEFD</Hsp_hseq> |
51 <Hsp_midline>GGG +R+W D +MYRGGG+S DAL LL QA</Hsp_midline> | 291 <Hsp_midline>F K+Y LP PVI PED +L D ++Y NS F+</Hsp_midline> |
52 </Hsp> | 292 </Hsp> |
53 </Hit_hsps> | 293 </Hit_hsps> |
54 </Hit> | 294 </Hit> |
55 </Iteration_hits> | 295 </Iteration_hits> |
56 <Iteration_stat> | 296 <Iteration_stat> |
57 <Statistics> | 297 <Statistics> |
58 <Statistics_db-num>7073</Statistics_db-num> | 298 <Statistics_db-num>16305</Statistics_db-num> |
59 <Statistics_db-len>36804204</Statistics_db-len> | 299 <Statistics_db-len>2821655</Statistics_db-len> |
60 <Statistics_hsp-len>24</Statistics_hsp-len> | 300 <Statistics_hsp-len>60</Statistics_hsp-len> |
61 <Statistics_eff-space>96786528</Statistics_eff-space> | 301 <Statistics_eff-space>70047490</Statistics_eff-space> |
62 <Statistics_kappa>0.133956144488482</Statistics_kappa> | 302 <Statistics_kappa>0.041</Statistics_kappa> |
63 <Statistics_lambda>0.317605957635731</Statistics_lambda> | 303 <Statistics_lambda>0.267</Statistics_lambda> |
64 <Statistics_entropy>0.401214524497119</Statistics_entropy> | 304 <Statistics_entropy>0.14</Statistics_entropy> |
65 </Statistics> | 305 </Statistics> |
66 </Iteration_stat> | 306 </Iteration_stat> |
67 </Iteration> | 307 </Iteration> |
68 <Iteration> | 308 <Iteration> |
69 <Iteration_iter-num>2</Iteration_iter-num> | 309 <Iteration_iter-num>14</Iteration_iter-num> |
70 <Iteration_query-ID>ds2020-482-EDGG-1-Q4_60894</Iteration_query-ID> | 310 <Iteration_query-ID>Query_14</Iteration_query-ID> |
71 <Iteration_query-def>No definition line</Iteration_query-def> | 311 <Iteration_query-def>NODE_14_length_294_cov_1.891213</Iteration_query-def> |
72 <Iteration_query-len>82</Iteration_query-len> | 312 <Iteration_query-len>294</Iteration_query-len> |
73 <Iteration_hits> | 313 <Iteration_hits> |
74 </Iteration_hits> | 314 </Iteration_hits> |
75 <Iteration_stat> | 315 <Iteration_stat> |
76 <Statistics> | 316 <Statistics> |
77 <Statistics_db-num>7073</Statistics_db-num> | 317 <Statistics_db-num>16305</Statistics_db-num> |
78 <Statistics_db-len>36804204</Statistics_db-len> | 318 <Statistics_db-len>2821655</Statistics_db-len> |
79 <Statistics_hsp-len>19</Statistics_hsp-len> | 319 <Statistics_hsp-len>60</Statistics_hsp-len> |
80 <Statistics_eff-space>97069448</Statistics_eff-space> | 320 <Statistics_eff-space>70047490</Statistics_eff-space> |
81 <Statistics_kappa>0.139224951877679</Statistics_kappa> | 321 <Statistics_kappa>0.041</Statistics_kappa> |
82 <Statistics_lambda>0.315124495232289</Statistics_lambda> | 322 <Statistics_lambda>0.267</Statistics_lambda> |
83 <Statistics_entropy>0.441609275168242</Statistics_entropy> | 323 <Statistics_entropy>0.14</Statistics_entropy> |
84 </Statistics> | 324 </Statistics> |
85 </Iteration_stat> | 325 </Iteration_stat> |
86 <Iteration_message>No hits found</Iteration_message> | 326 <Iteration_message>No hits found</Iteration_message> |
87 </Iteration> | 327 </Iteration> |
88 <Iteration> | 328 <Iteration> |
89 <Iteration_iter-num>3</Iteration_iter-num> | 329 <Iteration_iter-num>15</Iteration_iter-num> |
90 <Iteration_query-ID>ds2020-482-EDGG-1-Q4_64647</Iteration_query-ID> | 330 <Iteration_query-ID>Query_15</Iteration_query-ID> |
91 <Iteration_query-def>No definition line</Iteration_query-def> | 331 <Iteration_query-def>NODE_15_length_280_cov_1.413333</Iteration_query-def> |
92 <Iteration_query-len>80</Iteration_query-len> | 332 <Iteration_query-len>280</Iteration_query-len> |
93 <Iteration_hits> | 333 <Iteration_hits> |
94 </Iteration_hits> | 334 </Iteration_hits> |
95 <Iteration_stat> | 335 <Iteration_stat> |
96 <Statistics> | 336 <Statistics> |
97 <Statistics_db-num>7073</Statistics_db-num> | 337 <Statistics_db-num>16305</Statistics_db-num> |
98 <Statistics_db-len>36804204</Statistics_db-len> | 338 <Statistics_db-len>2821655</Statistics_db-len> |
99 <Statistics_hsp-len>18</Statistics_hsp-len> | 339 <Statistics_hsp-len>56</Statistics_hsp-len> |
100 <Statistics_eff-space>97126032</Statistics_eff-space> | 340 <Statistics_eff-space>70617275</Statistics_eff-space> |
101 <Statistics_kappa>0.133956144488482</Statistics_kappa> | 341 <Statistics_kappa>0.041</Statistics_kappa> |
102 <Statistics_lambda>0.317605957635731</Statistics_lambda> | 342 <Statistics_lambda>0.267</Statistics_lambda> |
103 <Statistics_entropy>0.401214524497119</Statistics_entropy> | 343 <Statistics_entropy>0.14</Statistics_entropy> |
104 </Statistics> | 344 </Statistics> |
105 </Iteration_stat> | 345 </Iteration_stat> |
106 <Iteration_message>No hits found</Iteration_message> | 346 <Iteration_message>No hits found</Iteration_message> |
107 </Iteration> | 347 </Iteration> |
108 <Iteration> | 348 <Iteration> |
109 <Iteration_iter-num>4</Iteration_iter-num> | 349 <Iteration_iter-num>16</Iteration_iter-num> |
110 <Iteration_query-ID>ds2020-482-EDGG-1-Q4_97438</Iteration_query-ID> | 350 <Iteration_query-ID>Query_16</Iteration_query-ID> |
111 <Iteration_query-def>No definition line</Iteration_query-def> | 351 <Iteration_query-def>NODE_16_length_278_cov_0.901345</Iteration_query-def> |
112 <Iteration_query-len>64</Iteration_query-len> | 352 <Iteration_query-len>278</Iteration_query-len> |
113 <Iteration_hits> | |
114 </Iteration_hits> | |
115 <Iteration_stat> | |
116 <Statistics> | |
117 <Statistics_db-num>7073</Statistics_db-num> | |
118 <Statistics_db-len>36804204</Statistics_db-len> | |
119 <Statistics_hsp-len>13</Statistics_hsp-len> | |
120 <Statistics_eff-space>97408952</Statistics_eff-space> | |
121 <Statistics_kappa>0.133956144488482</Statistics_kappa> | |
122 <Statistics_lambda>0.317605957635731</Statistics_lambda> | |
123 <Statistics_entropy>0.401214524497119</Statistics_entropy> | |
124 </Statistics> | |
125 </Iteration_stat> | |
126 <Iteration_message>No hits found</Iteration_message> | |
127 </Iteration> | |
128 <Iteration> | |
129 <Iteration_iter-num>5</Iteration_iter-num> | |
130 <Iteration_query-ID>ds2020-482-EDGG-1-Q4_104226</Iteration_query-ID> | |
131 <Iteration_query-def>No definition line</Iteration_query-def> | |
132 <Iteration_query-len>61</Iteration_query-len> | |
133 <Iteration_hits> | |
134 </Iteration_hits> | |
135 <Iteration_stat> | |
136 <Statistics> | |
137 <Statistics_db-num>7073</Statistics_db-num> | |
138 <Statistics_db-len>36804204</Statistics_db-len> | |
139 <Statistics_hsp-len>12</Statistics_hsp-len> | |
140 <Statistics_eff-space>97465536</Statistics_eff-space> | |
141 <Statistics_kappa>0.133956144488482</Statistics_kappa> | |
142 <Statistics_lambda>0.317605957635731</Statistics_lambda> | |
143 <Statistics_entropy>0.401214524497119</Statistics_entropy> | |
144 </Statistics> | |
145 </Iteration_stat> | |
146 <Iteration_message>No hits found</Iteration_message> | |
147 </Iteration> | |
148 <Iteration> | |
149 <Iteration_iter-num>6</Iteration_iter-num> | |
150 <Iteration_query-ID>ds2020-482-EDGG-1-Q4_60048</Iteration_query-ID> | |
151 <Iteration_query-def>No definition line</Iteration_query-def> | |
152 <Iteration_query-len>83</Iteration_query-len> | |
153 <Iteration_hits> | |
154 </Iteration_hits> | |
155 <Iteration_stat> | |
156 <Statistics> | |
157 <Statistics_db-num>7073</Statistics_db-num> | |
158 <Statistics_db-len>36804204</Statistics_db-len> | |
159 <Statistics_hsp-len>19</Statistics_hsp-len> | |
160 <Statistics_eff-space>97069448</Statistics_eff-space> | |
161 <Statistics_kappa>0.133956144488482</Statistics_kappa> | |
162 <Statistics_lambda>0.317605957635731</Statistics_lambda> | |
163 <Statistics_entropy>0.401214524497119</Statistics_entropy> | |
164 </Statistics> | |
165 </Iteration_stat> | |
166 <Iteration_message>No hits found</Iteration_message> | |
167 </Iteration> | |
168 <Iteration> | |
169 <Iteration_iter-num>7</Iteration_iter-num> | |
170 <Iteration_query-ID>ds2020-482-EDGG-1-Q4_57812</Iteration_query-ID> | |
171 <Iteration_query-def>No definition line</Iteration_query-def> | |
172 <Iteration_query-len>84</Iteration_query-len> | |
173 <Iteration_hits> | |
174 </Iteration_hits> | |
175 <Iteration_stat> | |
176 <Statistics> | |
177 <Statistics_db-num>7073</Statistics_db-num> | |
178 <Statistics_db-len>36804204</Statistics_db-len> | |
179 <Statistics_hsp-len>20</Statistics_hsp-len> | |
180 <Statistics_eff-space>97012864</Statistics_eff-space> | |
181 <Statistics_kappa>0.133956144488482</Statistics_kappa> | |
182 <Statistics_lambda>0.317605957635731</Statistics_lambda> | |
183 <Statistics_entropy>0.401214524497119</Statistics_entropy> | |
184 </Statistics> | |
185 </Iteration_stat> | |
186 <Iteration_message>No hits found</Iteration_message> | |
187 </Iteration> | |
188 <Iteration> | |
189 <Iteration_iter-num>8</Iteration_iter-num> | |
190 <Iteration_query-ID>ds2020-482-EDGG-1-Q4_107243</Iteration_query-ID> | |
191 <Iteration_query-def>No definition line</Iteration_query-def> | |
192 <Iteration_query-len>60</Iteration_query-len> | |
193 <Iteration_hits> | 353 <Iteration_hits> |
194 <Hit> | 354 <Hit> |
195 <Hit_num>1</Hit_num> | 355 <Hit_num>1</Hit_num> |
196 <Hit_id>ref|NC_006276.1|</Hit_id> | 356 <Hit_id>gnl|CDD|306845</Hit_id> |
197 <Hit_def>White clover cryptic virus 1 RNA2, complete genome</Hit_def> | 357 <Hit_def>pfam00421, PSII, Photosystem II protein. </Hit_def> |
198 <Hit_accession>NC_006276</Hit_accession> | 358 <Hit_accession>306845</Hit_accession> |
199 <Hit_len>1708</Hit_len> | 359 <Hit_len>500</Hit_len> |
200 <Hit_hsps> | 360 <Hit_hsps> |
201 <Hsp> | 361 <Hsp> |
202 <Hsp_num>1</Hsp_num> | 362 <Hsp_num>1</Hsp_num> |
203 <Hsp_bit-score>37.724</Hsp_bit-score> | 363 <Hsp_bit-score>132.634</Hsp_bit-score> |
204 <Hsp_score>76</Hsp_score> | 364 <Hsp_score>334</Hsp_score> |
205 <Hsp_evalue>0.000859157</Hsp_evalue> | 365 <Hsp_evalue>7.65615e-39</Hsp_evalue> |
206 <Hsp_query-from>2</Hsp_query-from> | 366 <Hsp_query-from>34</Hsp_query-from> |
207 <Hsp_query-to>52</Hsp_query-to> | 367 <Hsp_query-to>270</Hsp_query-to> |
208 <Hsp_hit-from>495</Hsp_hit-from> | 368 <Hsp_hit-from>388</Hsp_hit-from> |
209 <Hsp_hit-to>545</Hsp_hit-to> | 369 <Hsp_hit-to>466</Hsp_hit-to> |
210 <Hsp_query-frame>2</Hsp_query-frame> | 370 <Hsp_query-frame>1</Hsp_query-frame> |
211 <Hsp_hit-frame>3</Hsp_hit-frame> | 371 <Hsp_hit-frame>0</Hsp_hit-frame> |
212 <Hsp_identity>14</Hsp_identity> | 372 <Hsp_identity>52</Hsp_identity> |
213 <Hsp_positive>15</Hsp_positive> | 373 <Hsp_positive>61</Hsp_positive> |
214 <Hsp_gaps>0</Hsp_gaps> | 374 <Hsp_gaps>0</Hsp_gaps> |
215 <Hsp_align-len>17</Hsp_align-len> | 375 <Hsp_align-len>79</Hsp_align-len> |
216 <Hsp_qseq>ISVLWNTMILKVYVETG</Hsp_qseq> | 376 <Hsp_qseq>SRYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRGWFTFGHASFALLFFQTH</Hsp_qseq> |
217 <Hsp_hseq>VSVLWNVMILKVYVNTG</Hsp_hseq> | 377 <Hsp_hseq>SGYSLEQTGVTVQFYGGELNGQTFTDPWQVKRYARHAQLGELNSVDRVTTESDGVFRVSPRGWLAFSHFCFALLFFFGH</Hsp_hseq> |
218 <Hsp_midline>+SVLWN MILKVYV TG</Hsp_midline> | 378 <Hsp_midline>S YS+EQ GVTV+FYGGELNG +++DP VK+YAR AQLGE+ +DR T +SDGVFR SPRGW F H FALLFF H</Hsp_midline> |
219 </Hsp> | 379 </Hsp> |
220 </Hit_hsps> | 380 </Hit_hsps> |
221 </Hit> | 381 </Hit> |
222 </Iteration_hits> | 382 </Iteration_hits> |
223 <Iteration_stat> | 383 <Iteration_stat> |
224 <Statistics> | 384 <Statistics> |
225 <Statistics_db-num>7073</Statistics_db-num> | 385 <Statistics_db-num>16305</Statistics_db-num> |
226 <Statistics_db-len>36804204</Statistics_db-len> | 386 <Statistics_db-len>2821655</Statistics_db-len> |
227 <Statistics_hsp-len>12</Statistics_hsp-len> | 387 <Statistics_hsp-len>55</Statistics_hsp-len> |
228 <Statistics_eff-space>97465536</Statistics_eff-space> | 388 <Statistics_eff-space>71220560</Statistics_eff-space> |
229 <Statistics_kappa>0.133956144488482</Statistics_kappa> | 389 <Statistics_kappa>0.041</Statistics_kappa> |
230 <Statistics_lambda>0.317605957635731</Statistics_lambda> | 390 <Statistics_lambda>0.267</Statistics_lambda> |
231 <Statistics_entropy>0.401214524497119</Statistics_entropy> | 391 <Statistics_entropy>0.14</Statistics_entropy> |
232 </Statistics> | 392 </Statistics> |
233 </Iteration_stat> | 393 </Iteration_stat> |
234 </Iteration> | 394 </Iteration> |
235 <Iteration> | 395 <Iteration> |
236 <Iteration_iter-num>9</Iteration_iter-num> | 396 <Iteration_iter-num>17</Iteration_iter-num> |
237 <Iteration_query-ID>ds2020-482-EDGG-1-Q4_99332</Iteration_query-ID> | 397 <Iteration_query-ID>Query_17</Iteration_query-ID> |
238 <Iteration_query-def>No definition line</Iteration_query-def> | 398 <Iteration_query-def>NODE_17_length_277_cov_1.540541</Iteration_query-def> |
239 <Iteration_query-len>63</Iteration_query-len> | 399 <Iteration_query-len>277</Iteration_query-len> |
240 <Iteration_hits> | 400 <Iteration_hits> |
241 </Iteration_hits> | 401 </Iteration_hits> |
242 <Iteration_stat> | 402 <Iteration_stat> |
243 <Statistics> | 403 <Statistics> |
244 <Statistics_db-num>7073</Statistics_db-num> | 404 <Statistics_db-num>16305</Statistics_db-num> |
245 <Statistics_db-len>36804204</Statistics_db-len> | 405 <Statistics_db-len>2821655</Statistics_db-len> |
246 <Statistics_hsp-len>13</Statistics_hsp-len> | 406 <Statistics_hsp-len>55</Statistics_hsp-len> |
247 <Statistics_eff-space>97408952</Statistics_eff-space> | 407 <Statistics_eff-space>71220560</Statistics_eff-space> |
248 <Statistics_kappa>0.133969292349849</Statistics_kappa> | 408 <Statistics_kappa>0.041</Statistics_kappa> |
249 <Statistics_lambda>0.313843789061929</Statistics_lambda> | 409 <Statistics_lambda>0.267</Statistics_lambda> |
250 <Statistics_entropy>0.427993038537577</Statistics_entropy> | 410 <Statistics_entropy>0.14</Statistics_entropy> |
251 </Statistics> | 411 </Statistics> |
252 </Iteration_stat> | 412 </Iteration_stat> |
253 <Iteration_message>No hits found</Iteration_message> | 413 <Iteration_message>No hits found</Iteration_message> |
254 </Iteration> | 414 </Iteration> |
255 <Iteration> | 415 <Iteration> |
256 <Iteration_iter-num>10</Iteration_iter-num> | 416 <Iteration_iter-num>18</Iteration_iter-num> |
257 <Iteration_query-ID>ds2020-482-EDGG-1-Q4_77228</Iteration_query-ID> | 417 <Iteration_query-ID>Query_18</Iteration_query-ID> |
258 <Iteration_query-def>No definition line</Iteration_query-def> | 418 <Iteration_query-def>NODE_18_length_274_cov_3.872146</Iteration_query-def> |
259 <Iteration_query-len>74</Iteration_query-len> | 419 <Iteration_query-len>274</Iteration_query-len> |
260 <Iteration_hits> | 420 <Iteration_hits> |
261 </Iteration_hits> | 421 </Iteration_hits> |
262 <Iteration_stat> | 422 <Iteration_stat> |
263 <Statistics> | 423 <Statistics> |
264 <Statistics_db-num>7073</Statistics_db-num> | 424 <Statistics_db-num>16305</Statistics_db-num> |
265 <Statistics_db-len>36804204</Statistics_db-len> | 425 <Statistics_db-len>2821655</Statistics_db-len> |
266 <Statistics_hsp-len>16</Statistics_hsp-len> | 426 <Statistics_hsp-len>55</Statistics_hsp-len> |
267 <Statistics_eff-space>97239200</Statistics_eff-space> | 427 <Statistics_eff-space>69295680</Statistics_eff-space> |
268 <Statistics_kappa>0.133956144488482</Statistics_kappa> | 428 <Statistics_kappa>0.041</Statistics_kappa> |
269 <Statistics_lambda>0.317605957635731</Statistics_lambda> | 429 <Statistics_lambda>0.267</Statistics_lambda> |
270 <Statistics_entropy>0.401214524497119</Statistics_entropy> | 430 <Statistics_entropy>0.14</Statistics_entropy> |
271 </Statistics> | 431 </Statistics> |
272 </Iteration_stat> | 432 </Iteration_stat> |
273 <Iteration_message>No hits found</Iteration_message> | 433 <Iteration_message>No hits found</Iteration_message> |
274 </Iteration> | 434 </Iteration> |
275 <Iteration> | 435 <Iteration> |
276 <Iteration_iter-num>11</Iteration_iter-num> | 436 <Iteration_iter-num>19</Iteration_iter-num> |
277 <Iteration_query-ID>ds2020-482-EDGG-1-Q4_66730</Iteration_query-ID> | 437 <Iteration_query-ID>Query_19</Iteration_query-ID> |
278 <Iteration_query-def>No definition line</Iteration_query-def> | 438 <Iteration_query-def>NODE_19_length_271_cov_0.879630</Iteration_query-def> |
279 <Iteration_query-len>79</Iteration_query-len> | 439 <Iteration_query-len>271</Iteration_query-len> |
280 <Iteration_hits> | |
281 </Iteration_hits> | |
282 <Iteration_stat> | |
283 <Statistics> | |
284 <Statistics_db-num>7073</Statistics_db-num> | |
285 <Statistics_db-len>36804204</Statistics_db-len> | |
286 <Statistics_hsp-len>17</Statistics_hsp-len> | |
287 <Statistics_eff-space>109330443</Statistics_eff-space> | |
288 <Statistics_kappa>0.123285876267438</Statistics_kappa> | |
289 <Statistics_lambda>0.308001358455575</Statistics_lambda> | |
290 <Statistics_entropy>0.370429799913588</Statistics_entropy> | |
291 </Statistics> | |
292 </Iteration_stat> | |
293 <Iteration_message>No hits found</Iteration_message> | |
294 </Iteration> | |
295 <Iteration> | |
296 <Iteration_iter-num>12</Iteration_iter-num> | |
297 <Iteration_query-ID>ds2020-482-EDGG-1-Q4_2681</Iteration_query-ID> | |
298 <Iteration_query-def>No definition line</Iteration_query-def> | |
299 <Iteration_query-len>348</Iteration_query-len> | |
300 <Iteration_hits> | 440 <Iteration_hits> |
301 <Hit> | 441 <Hit> |
302 <Hit_num>1</Hit_num> | 442 <Hit_num>1</Hit_num> |
303 <Hit_id>ref|NC_011554.1|</Hit_id> | 443 <Hit_id>gnl|CDD|306845</Hit_id> |
304 <Hit_def>Blackberry chlorotic ringspot virus RNA2, complete genome</Hit_def> | 444 <Hit_def>pfam00421, PSII, Photosystem II protein. </Hit_def> |
305 <Hit_accession>NC_011554</Hit_accession> | 445 <Hit_accession>306845</Hit_accession> |
306 <Hit_len>2879</Hit_len> | 446 <Hit_len>500</Hit_len> |
307 <Hit_hsps> | 447 <Hit_hsps> |
308 <Hsp> | 448 <Hsp> |
309 <Hsp_num>1</Hsp_num> | 449 <Hsp_num>1</Hsp_num> |
310 <Hsp_bit-score>72.0897</Hsp_bit-score> | 450 <Hsp_bit-score>56.3644</Hsp_bit-score> |
311 <Hsp_score>151</Hsp_score> | 451 <Hsp_score>136</Hsp_score> |
312 <Hsp_evalue>1.04985e-23</Hsp_evalue> | 452 <Hsp_evalue>1.69015e-11</Hsp_evalue> |
313 <Hsp_query-from>137</Hsp_query-from> | 453 <Hsp_query-from>82</Hsp_query-from> |
314 <Hsp_query-to>286</Hsp_query-to> | 454 <Hsp_query-to>252</Hsp_query-to> |
315 <Hsp_hit-from>117</Hsp_hit-from> | 455 <Hsp_hit-from>165</Hsp_hit-from> |
316 <Hsp_hit-to>266</Hsp_hit-to> | 456 <Hsp_hit-to>224</Hsp_hit-to> |
317 <Hsp_query-frame>-3</Hsp_query-frame> | 457 <Hsp_query-frame>1</Hsp_query-frame> |
318 <Hsp_hit-frame>3</Hsp_hit-frame> | 458 <Hsp_hit-frame>0</Hsp_hit-frame> |
319 <Hsp_identity>28</Hsp_identity> | 459 <Hsp_identity>23</Hsp_identity> |
320 <Hsp_positive>36</Hsp_positive> | 460 <Hsp_positive>34</Hsp_positive> |
461 <Hsp_gaps>23</Hsp_gaps> | |
462 <Hsp_align-len>70</Hsp_align-len> | |
463 <Hsp_qseq>ITNLTLNPSVIFGYL-------------LKSPFGGEGWIVSVDDLEDIIGGHVWLGSICILGGIWHILTK</Hsp_qseq> | |
464 <Hsp_hseq>VSDPTLDPGVIYGYTGHVQPVAPVWGAEGFSPFGPGG----------IVGHHIAAGILGIIGGIFHITTR</Hsp_hseq> | |
465 <Hsp_midline>+++ TL+P VI+GY SPFG G I+G H+ G + I+GGI+HI T+</Hsp_midline> | |
466 </Hsp> | |
467 </Hit_hsps> | |
468 </Hit> | |
469 </Iteration_hits> | |
470 <Iteration_stat> | |
471 <Statistics> | |
472 <Statistics_db-num>16305</Statistics_db-num> | |
473 <Statistics_db-len>2821655</Statistics_db-len> | |
474 <Statistics_hsp-len>54</Statistics_hsp-len> | |
475 <Statistics_eff-space>69882660</Statistics_eff-space> | |
476 <Statistics_kappa>0.041</Statistics_kappa> | |
477 <Statistics_lambda>0.267</Statistics_lambda> | |
478 <Statistics_entropy>0.14</Statistics_entropy> | |
479 </Statistics> | |
480 </Iteration_stat> | |
481 </Iteration> | |
482 <Iteration> | |
483 <Iteration_iter-num>20</Iteration_iter-num> | |
484 <Iteration_query-ID>Query_20</Iteration_query-ID> | |
485 <Iteration_query-def>NODE_20_length_267_cov_1.429245</Iteration_query-def> | |
486 <Iteration_query-len>267</Iteration_query-len> | |
487 <Iteration_hits> | |
488 <Hit> | |
489 <Hit_num>1</Hit_num> | |
490 <Hit_id>gnl|CDD|287774</Hit_id> | |
491 <Hit_def>pfam10839, DUF2647, Protein of unknown function (DUF2647). This eukaryotic family of proteins are annotated as ycf68 but have no known function.</Hit_def> | |
492 <Hit_accession>287774</Hit_accession> | |
493 <Hit_len>70</Hit_len> | |
494 <Hit_hsps> | |
495 <Hsp> | |
496 <Hsp_num>1</Hsp_num> | |
497 <Hsp_bit-score>48.4966</Hsp_bit-score> | |
498 <Hsp_score>115</Hsp_score> | |
499 <Hsp_evalue>7.70073e-10</Hsp_evalue> | |
500 <Hsp_query-from>165</Hsp_query-from> | |
501 <Hsp_query-to>233</Hsp_query-to> | |
502 <Hsp_hit-from>22</Hsp_hit-from> | |
503 <Hsp_hit-to>44</Hsp_hit-to> | |
504 <Hsp_query-frame>-2</Hsp_query-frame> | |
505 <Hsp_hit-frame>0</Hsp_hit-frame> | |
506 <Hsp_identity>21</Hsp_identity> | |
507 <Hsp_positive>22</Hsp_positive> | |
321 <Hsp_gaps>0</Hsp_gaps> | 508 <Hsp_gaps>0</Hsp_gaps> |
322 <Hsp_align-len>50</Hsp_align-len> | 509 <Hsp_align-len>23</Hsp_align-len> |
323 <Hsp_qseq>DNYDEWVKLFLFEFVVKHTAKFDFATIFDTFEMVVRTIDPSIPDFYEEDD</Hsp_qseq> | 510 <Hsp_qseq>GAIQVRSNVDPTFYSLVGSGRSG</Hsp_qseq> |
324 <Hsp_hseq>DMYKEWVSMFLFKFIVEHTAKFDFATIDCTFGMIVARLIPGYSDLDDEDE</Hsp_hseq> | 511 <Hsp_hseq>GAIQVRSHVDLTFYSLVGSGRSG</Hsp_hseq> |
325 <Hsp_midline>D Y EWV +FLF+F+V+HTAKFDFATI TF M+V + P D +ED+</Hsp_midline> | 512 <Hsp_midline>GAIQVRS+VD TFYSLVGSGRSG</Hsp_midline> |
326 </Hsp> | 513 </Hsp> |
327 <Hsp> | 514 <Hsp> |
328 <Hsp_num>2</Hsp_num> | 515 <Hsp_num>2</Hsp_num> |
329 <Hsp_bit-score>56.0524</Hsp_bit-score> | 516 <Hsp_bit-score>43.1038</Hsp_bit-score> |
330 <Hsp_score>116</Hsp_score> | 517 <Hsp_score>101</Hsp_score> |
331 <Hsp_evalue>1.04985e-23</Hsp_evalue> | 518 <Hsp_evalue>7.90575e-08</Hsp_evalue> |
332 <Hsp_query-from>38</Hsp_query-from> | 519 <Hsp_query-from>88</Hsp_query-from> |
333 <Hsp_query-to>148</Hsp_query-to> | 520 <Hsp_query-to>222</Hsp_query-to> |
334 <Hsp_hit-from>252</Hsp_hit-from> | 521 <Hsp_hit-from>22</Hsp_hit-from> |
335 <Hsp_hit-to>362</Hsp_hit-to> | 522 <Hsp_hit-to>70</Hsp_hit-to> |
336 <Hsp_query-frame>-3</Hsp_query-frame> | 523 <Hsp_query-frame>-1</Hsp_query-frame> |
337 <Hsp_hit-frame>3</Hsp_hit-frame> | 524 <Hsp_hit-frame>0</Hsp_hit-frame> |
338 <Hsp_identity>21</Hsp_identity> | 525 <Hsp_identity>23</Hsp_identity> |
339 <Hsp_positive>28</Hsp_positive> | 526 <Hsp_positive>27</Hsp_positive> |
340 <Hsp_gaps>0</Hsp_gaps> | 527 <Hsp_gaps>4</Hsp_gaps> |
341 <Hsp_align-len>37</Hsp_align-len> | 528 <Hsp_align-len>49</Hsp_align-len> |
342 <Hsp_qseq>EEDDSGLFPREIDSFYLPYDDLDVDYTKVVHDCRDID</Hsp_qseq> | 529 <Hsp_qseq>GEIQCRSN----FLFTRGIRAVREGPPWLLSSRESIHPLSVYGQLSLEH</Hsp_qseq> |
343 <Hsp_hseq>DDEDEEHSPREIDSFYLPYDDLDVDYTTIDYRRDDVE</Hsp_hseq> | 530 <Hsp_hseq>GAIQVRSHVDLTFYSLVGSGRSGGGPPALLFSREHIHLISVWGAISLAH</Hsp_hseq> |
344 <Hsp_midline>+++D PREIDSFYLPYDDLDVDYT + + D++</Hsp_midline> | 531 <Hsp_midline>G IQ RS+ F G GPP LL SRE IH +SV+G +SL H</Hsp_midline> |
345 </Hsp> | 532 </Hsp> |
346 <Hsp> | 533 <Hsp> |
347 <Hsp_num>3</Hsp_num> | 534 <Hsp_num>3</Hsp_num> |
348 <Hsp_bit-score>44.5971</Hsp_bit-score> | 535 <Hsp_bit-score>42.7186</Hsp_bit-score> |
349 <Hsp_score>91</Hsp_score> | 536 <Hsp_score>100</Hsp_score> |
350 <Hsp_evalue>2.20433e-07</Hsp_evalue> | 537 <Hsp_evalue>1.07047e-07</Hsp_evalue> |
351 <Hsp_query-from>183</Hsp_query-from> | 538 <Hsp_query-from>86</Hsp_query-from> |
352 <Hsp_query-to>275</Hsp_query-to> | 539 <Hsp_query-to>175</Hsp_query-to> |
353 <Hsp_hit-from>128</Hsp_hit-from> | 540 <Hsp_hit-from>41</Hsp_hit-from> |
354 <Hsp_hit-to>220</Hsp_hit-to> | 541 <Hsp_hit-to>70</Hsp_hit-to> |
355 <Hsp_query-frame>3</Hsp_query-frame> | 542 <Hsp_query-frame>-3</Hsp_query-frame> |
356 <Hsp_hit-frame>-2</Hsp_hit-frame> | 543 <Hsp_hit-frame>0</Hsp_hit-frame> |
357 <Hsp_identity>19</Hsp_identity> | 544 <Hsp_identity>17</Hsp_identity> |
358 <Hsp_positive>20</Hsp_positive> | 545 <Hsp_positive>18</Hsp_positive> |
359 <Hsp_gaps>0</Hsp_gaps> | 546 <Hsp_gaps>0</Hsp_gaps> |
360 <Hsp_align-len>31</Hsp_align-len> | 547 <Hsp_align-len>30</Hsp_align-len> |
361 <Hsp_qseq>TTISNVSKIVAKSNFAVCLTTNSKRKSFTHS</Hsp_qseq> | 548 <Hsp_qseq>GGPGGTTMAPLFSRIHTSLISIWTAISRAQ</Hsp_qseq> |
362 <Hsp_hseq>TIIPNVQSIVAKSNFAVCSTINLNKNMLTHS</Hsp_hseq> | 549 <Hsp_hseq>GRSGGGPPALLFSREHIHLISVWGAISLAH</Hsp_hseq> |
363 <Hsp_midline>T I NV IVAKSNFAVC T N + THS</Hsp_midline> | 550 <Hsp_midline>G GG A LFSR H LIS+W AIS A </Hsp_midline> |
364 </Hsp> | |
365 <Hsp> | |
366 <Hsp_num>4</Hsp_num> | |
367 <Hsp_bit-score>28.1016</Hsp_bit-score> | |
368 <Hsp_score>55</Hsp_score> | |
369 <Hsp_evalue>2.20433e-07</Hsp_evalue> | |
370 <Hsp_query-from>73</Hsp_query-from> | |
371 <Hsp_query-to>126</Hsp_query-to> | |
372 <Hsp_hit-from>274</Hsp_hit-from> | |
373 <Hsp_hit-to>327</Hsp_hit-to> | |
374 <Hsp_query-frame>1</Hsp_query-frame> | |
375 <Hsp_hit-frame>-3</Hsp_hit-frame> | |
376 <Hsp_identity>12</Hsp_identity> | |
377 <Hsp_positive>12</Hsp_positive> | |
378 <Hsp_gaps>0</Hsp_gaps> | |
379 <Hsp_align-len>18</Hsp_align-len> | |
380 <Hsp_qseq>SPHQDHHKVDKRNQFP*E</Hsp_qseq> | |
381 <Hsp_hseq>SLHQDRRMEDKRNQSP*E</Hsp_hseq> | |
382 <Hsp_midline>S HQD DKRNQ P*E</Hsp_midline> | |
383 </Hsp> | 551 </Hsp> |
384 </Hit_hsps> | 552 </Hit_hsps> |
385 </Hit> | 553 </Hit> |
386 </Iteration_hits> | 554 </Iteration_hits> |
387 <Iteration_stat> | 555 <Iteration_stat> |
388 <Statistics> | 556 <Statistics> |
389 <Statistics_db-num>7073</Statistics_db-num> | 557 <Statistics_db-num>16305</Statistics_db-num> |
390 <Statistics_db-len>36804204</Statistics_db-len> | 558 <Statistics_db-len>2821655</Statistics_db-len> |
391 <Statistics_hsp-len>43</Statistics_hsp-len> | 559 <Statistics_hsp-len>53</Statistics_hsp-len> |
392 <Statistics_eff-space>873366817</Statistics_eff-space> | 560 <Statistics_eff-space>70469640</Statistics_eff-space> |
393 <Statistics_kappa>0.133956144488482</Statistics_kappa> | 561 <Statistics_kappa>0.041</Statistics_kappa> |
394 <Statistics_lambda>0.317605957635731</Statistics_lambda> | 562 <Statistics_lambda>0.267</Statistics_lambda> |
395 <Statistics_entropy>0.401214524497119</Statistics_entropy> | 563 <Statistics_entropy>0.14</Statistics_entropy> |
396 </Statistics> | 564 </Statistics> |
397 </Iteration_stat> | 565 </Iteration_stat> |
398 </Iteration> | 566 </Iteration> |
399 <Iteration> | 567 <Iteration> |
400 <Iteration_iter-num>19</Iteration_iter-num> | 568 <Iteration_iter-num>21</Iteration_iter-num> |
401 <Iteration_query-ID>ds2020-482-EDGG-1-Q4_107857</Iteration_query-ID> | 569 <Iteration_query-ID>Query_21</Iteration_query-ID> |
402 <Iteration_query-def>No definition line</Iteration_query-def> | 570 <Iteration_query-def>NODE_21_length_263_cov_1.177885</Iteration_query-def> |
403 <Iteration_query-len>59</Iteration_query-len> | 571 <Iteration_query-len>263</Iteration_query-len> |
572 <Iteration_hits> | |
573 </Iteration_hits> | |
574 <Iteration_stat> | |
575 <Statistics> | |
576 <Statistics_db-num>16305</Statistics_db-num> | |
577 <Statistics_db-len>2821655</Statistics_db-len> | |
578 <Statistics_hsp-len>52</Statistics_hsp-len> | |
579 <Statistics_eff-space>69082825</Statistics_eff-space> | |
580 <Statistics_kappa>0.041</Statistics_kappa> | |
581 <Statistics_lambda>0.267</Statistics_lambda> | |
582 <Statistics_entropy>0.14</Statistics_entropy> | |
583 </Statistics> | |
584 </Iteration_stat> | |
585 <Iteration_message>No hits found</Iteration_message> | |
586 </Iteration> | |
587 <Iteration> | |
588 <Iteration_iter-num>22</Iteration_iter-num> | |
589 <Iteration_query-ID>Query_22</Iteration_query-ID> | |
590 <Iteration_query-def>NODE_22_length_262_cov_1.053140</Iteration_query-def> | |
591 <Iteration_query-len>262</Iteration_query-len> | |
404 <Iteration_hits> | 592 <Iteration_hits> |
405 <Hit> | 593 <Hit> |
406 <Hit_num>1</Hit_num> | 594 <Hit_num>1</Hit_num> |
407 <Hit_id>ref|NC_003501.1|</Hit_id> | 595 <Hit_id>gnl|CDD|306604</Hit_id> |
408 <Hit_def>Brome streak mosaic virus, complete genome</Hit_def> | 596 <Hit_def>pfam00124, Photo_RC, Photosynthetic reaction centre protein. </Hit_def> |
409 <Hit_accession>NC_003501</Hit_accession> | 597 <Hit_accession>306604</Hit_accession> |
410 <Hit_len>9672</Hit_len> | 598 <Hit_len>258</Hit_len> |
411 <Hit_hsps> | 599 <Hit_hsps> |
412 <Hsp> | 600 <Hsp> |
413 <Hsp_num>1</Hsp_num> | 601 <Hsp_num>1</Hsp_num> |
414 <Hsp_bit-score>62.0091</Hsp_bit-score> | 602 <Hsp_bit-score>99.6256</Hsp_bit-score> |
415 <Hsp_score>129</Hsp_score> | 603 <Hsp_score>249</Hsp_score> |
416 <Hsp_evalue>4.20284e-11</Hsp_evalue> | 604 <Hsp_evalue>4.94039e-28</Hsp_evalue> |
417 <Hsp_query-from>2</Hsp_query-from> | 605 <Hsp_query-from>31</Hsp_query-from> |
418 <Hsp_query-to>58</Hsp_query-to> | 606 <Hsp_query-to>228</Hsp_query-to> |
419 <Hsp_hit-from>3274</Hsp_hit-from> | 607 <Hsp_hit-from>77</Hsp_hit-from> |
420 <Hsp_hit-to>3330</Hsp_hit-to> | 608 <Hsp_hit-to>142</Hsp_hit-to> |
421 <Hsp_query-frame>2</Hsp_query-frame> | 609 <Hsp_query-frame>1</Hsp_query-frame> |
422 <Hsp_hit-frame>1</Hsp_hit-frame> | 610 <Hsp_hit-frame>0</Hsp_hit-frame> |
423 <Hsp_identity>19</Hsp_identity> | 611 <Hsp_identity>27</Hsp_identity> |
424 <Hsp_positive>19</Hsp_positive> | 612 <Hsp_positive>41</Hsp_positive> |
425 <Hsp_gaps>0</Hsp_gaps> | 613 <Hsp_gaps>0</Hsp_gaps> |
426 <Hsp_align-len>19</Hsp_align-len> | 614 <Hsp_align-len>66</Hsp_align-len> |
427 <Hsp_qseq>QDCRKCHTDIGCSCDYCNW</Hsp_qseq> | 615 <Hsp_qseq>SVACYMGREWEVSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQ</Hsp_qseq> |
428 <Hsp_hseq>QDCRKCHTDIGCSCDYCNW</Hsp_hseq> | 616 <Hsp_hseq>AFISWWLREYEIARKLGMGPHIAWAFSAAIAAYLSLGLIRPILMGSWSEGFPLGIFPHLDWTSNFS</Hsp_hseq> |
429 <Hsp_midline>QDCRKCHTDIGCSCDYCNW</Hsp_midline> | 617 <Hsp_midline>+ + RE+E++ +LGM P IA A+SA +AA ++ LI PI GS+S+G PLGI ++ F </Hsp_midline> |
430 </Hsp> | |
431 <Hsp> | |
432 <Hsp_num>2</Hsp_num> | |
433 <Hsp_bit-score>55.1359</Hsp_bit-score> | |
434 <Hsp_score>114</Hsp_score> | |
435 <Hsp_evalue>4.92676e-09</Hsp_evalue> | |
436 <Hsp_query-from>3</Hsp_query-from> | |
437 <Hsp_query-to>59</Hsp_query-to> | |
438 <Hsp_hit-from>3275</Hsp_hit-from> | |
439 <Hsp_hit-to>3331</Hsp_hit-to> | |
440 <Hsp_query-frame>-1</Hsp_query-frame> | |
441 <Hsp_hit-frame>-3</Hsp_hit-frame> | |
442 <Hsp_identity>19</Hsp_identity> | |
443 <Hsp_positive>19</Hsp_positive> | |
444 <Hsp_gaps>0</Hsp_gaps> | |
445 <Hsp_align-len>19</Hsp_align-len> | |
446 <Hsp_qseq>ANCSNHSCNQYLCGTFDNL</Hsp_qseq> | |
447 <Hsp_hseq>ANCSNHSCNQYLCGTFDNL</Hsp_hseq> | |
448 <Hsp_midline>ANCSNHSCNQYLCGTFDNL</Hsp_midline> | |
449 </Hsp> | 618 </Hsp> |
450 </Hit_hsps> | 619 </Hit_hsps> |
451 </Hit> | 620 </Hit> |
452 </Iteration_hits> | 621 </Iteration_hits> |
453 <Iteration_stat> | 622 <Iteration_stat> |
454 <Statistics> | 623 <Statistics> |
455 <Statistics_db-num>7073</Statistics_db-num> | 624 <Statistics_db-num>16305</Statistics_db-num> |
456 <Statistics_db-len>36804204</Statistics_db-len> | 625 <Statistics_db-len>2821655</Statistics_db-len> |
457 <Statistics_hsp-len>11</Statistics_hsp-len> | 626 <Statistics_hsp-len>52</Statistics_hsp-len> |
458 <Statistics_eff-space>97522120</Statistics_eff-space> | 627 <Statistics_eff-space>69082825</Statistics_eff-space> |
459 <Statistics_kappa>0.133956144488482</Statistics_kappa> | 628 <Statistics_kappa>0.041</Statistics_kappa> |
460 <Statistics_lambda>0.317605957635731</Statistics_lambda> | 629 <Statistics_lambda>0.267</Statistics_lambda> |
461 <Statistics_entropy>0.401214524497119</Statistics_entropy> | 630 <Statistics_entropy>0.14</Statistics_entropy> |
462 </Statistics> | 631 </Statistics> |
463 </Iteration_stat> | 632 </Iteration_stat> |
464 </Iteration> | |
465 <Iteration> | |
466 <Iteration_iter-num>20</Iteration_iter-num> | |
467 <Iteration_query-ID>ds2020-482-EDGG-1-Q4_83983</Iteration_query-ID> | |
468 <Iteration_query-def>No definition line</Iteration_query-def> | |
469 <Iteration_query-len>71</Iteration_query-len> | |
470 <Iteration_hits> | |
471 </Iteration_hits> | |
472 <Iteration_stat> | |
473 <Statistics> | |
474 <Statistics_db-num>7073</Statistics_db-num> | |
475 <Statistics_db-len>36804204</Statistics_db-len> | |
476 <Statistics_hsp-len>15</Statistics_hsp-len> | |
477 <Statistics_eff-space>97295784</Statistics_eff-space> | |
478 <Statistics_kappa>0.133956144488482</Statistics_kappa> | |
479 <Statistics_lambda>0.317605957635731</Statistics_lambda> | |
480 <Statistics_entropy>0.401214524497119</Statistics_entropy> | |
481 </Statistics> | |
482 </Iteration_stat> | |
483 <Iteration_message>No hits found</Iteration_message> | |
484 </Iteration> | |
485 <Iteration> | |
486 <Iteration_iter-num>21</Iteration_iter-num> | |
487 <Iteration_query-ID>ds2020-482-EDGG-1-Q4_92239</Iteration_query-ID> | |
488 <Iteration_query-def>No definition line</Iteration_query-def> | |
489 <Iteration_query-len>66</Iteration_query-len> | |
490 <Iteration_hits> | |
491 </Iteration_hits> | |
492 <Iteration_stat> | |
493 <Statistics> | |
494 <Statistics_db-num>7073</Statistics_db-num> | |
495 <Statistics_db-len>36804204</Statistics_db-len> | |
496 <Statistics_hsp-len>14</Statistics_hsp-len> | |
497 <Statistics_eff-space>97352368</Statistics_eff-space> | |
498 <Statistics_kappa>0.133956144488482</Statistics_kappa> | |
499 <Statistics_lambda>0.317605957635731</Statistics_lambda> | |
500 <Statistics_entropy>0.401214524497119</Statistics_entropy> | |
501 </Statistics> | |
502 </Iteration_stat> | |
503 <Iteration_message>No hits found</Iteration_message> | |
504 </Iteration> | |
505 <Iteration> | |
506 <Iteration_iter-num>22</Iteration_iter-num> | |
507 <Iteration_query-ID>ds2020-482-EDGG-1-Q4_31663</Iteration_query-ID> | |
508 <Iteration_query-def>No definition line</Iteration_query-def> | |
509 <Iteration_query-len>111</Iteration_query-len> | |
510 <Iteration_hits> | |
511 </Iteration_hits> | |
512 <Iteration_stat> | |
513 <Statistics> | |
514 <Statistics_db-num>7073</Statistics_db-num> | |
515 <Statistics_db-len>36804204</Statistics_db-len> | |
516 <Statistics_hsp-len>29</Statistics_hsp-len> | |
517 <Statistics_eff-space>96503608</Statistics_eff-space> | |
518 <Statistics_kappa>0.133956144488482</Statistics_kappa> | |
519 <Statistics_lambda>0.317605957635731</Statistics_lambda> | |
520 <Statistics_entropy>0.401214524497119</Statistics_entropy> | |
521 </Statistics> | |
522 </Iteration_stat> | |
523 <Iteration_message>No hits found</Iteration_message> | |
524 </Iteration> | 633 </Iteration> |
525 <Iteration> | 634 <Iteration> |
526 <Iteration_iter-num>23</Iteration_iter-num> | 635 <Iteration_iter-num>23</Iteration_iter-num> |
527 <Iteration_query-ID>ds2020-482-EDGG-1-Q4_63163</Iteration_query-ID> | 636 <Iteration_query-ID>Query_23</Iteration_query-ID> |
528 <Iteration_query-def>No definition line</Iteration_query-def> | 637 <Iteration_query-def>NODE_23_length_260_cov_1.590244</Iteration_query-def> |
529 <Iteration_query-len>81</Iteration_query-len> | 638 <Iteration_query-len>260</Iteration_query-len> |
639 <Iteration_hits> | |
640 </Iteration_hits> | |
641 <Iteration_stat> | |
642 <Statistics> | |
643 <Statistics_db-num>16305</Statistics_db-num> | |
644 <Statistics_db-len>2821655</Statistics_db-len> | |
645 <Statistics_hsp-len>51</Statistics_hsp-len> | |
646 <Statistics_eff-space>69653500</Statistics_eff-space> | |
647 <Statistics_kappa>0.041</Statistics_kappa> | |
648 <Statistics_lambda>0.267</Statistics_lambda> | |
649 <Statistics_entropy>0.14</Statistics_entropy> | |
650 </Statistics> | |
651 </Iteration_stat> | |
652 <Iteration_message>No hits found</Iteration_message> | |
653 </Iteration> | |
654 <Iteration> | |
655 <Iteration_iter-num>24</Iteration_iter-num> | |
656 <Iteration_query-ID>Query_24</Iteration_query-ID> | |
657 <Iteration_query-def>NODE_24_length_258_cov_0.935961</Iteration_query-def> | |
658 <Iteration_query-len>258</Iteration_query-len> | |
530 <Iteration_hits> | 659 <Iteration_hits> |
531 <Hit> | 660 <Hit> |
532 <Hit_num>1</Hit_num> | 661 <Hit_num>1</Hit_num> |
533 <Hit_id>ref|NC_011591.1|</Hit_id> | 662 <Hit_id>gnl|CDD|307679</Hit_id> |
534 <Hit_def>Southern tomato virus, complete genome</Hit_def> | 663 <Hit_def>pfam01660, Vmethyltransf, Viral methyltransferase. This RNA methyltransferase domain is found in a wide range of ssRNA viruses, including Hordei-, Tobra-, Tobamo-, Bromo-, Clostero- and Caliciviruses. This methyltransferase is involved in mRNA capping. Capping of mRNA enhances its stability. This usually occurs in the nucleus. Therefore, many viruses that replicate in the cytoplasm encode their own. This is a specific guanine-7-methyltransferase domain involved in viral mRNA cap0 synthesis. Specificity for guanine 7 position is shown by NMR in and in vivo role in cap synthesis. Based on secondary structure prediction, the basic fold is believed to be similar to the common AdoMet-dependent methyltransferase fold. A curious feature of this methyltransferase domain is that it together with flanking sequences seems to have guanylyltransferase activity coupled to the methyltransferase activity. The domain is found throughout the so-called Alphavirus superfamily, (including alphaviruses and several other groups). It forms the defining, unique feature of this superfamily.</Hit_def> |
535 <Hit_accession>NC_011591</Hit_accession> | 664 <Hit_accession>307679</Hit_accession> |
536 <Hit_len>3437</Hit_len> | 665 <Hit_len>305</Hit_len> |
537 <Hit_hsps> | 666 <Hit_hsps> |
538 <Hsp> | 667 <Hsp> |
539 <Hsp_num>1</Hsp_num> | 668 <Hsp_num>1</Hsp_num> |
540 <Hsp_bit-score>44.1389</Hsp_bit-score> | 669 <Hsp_bit-score>65.0021</Hsp_bit-score> |
541 <Hsp_score>90</Hsp_score> | 670 <Hsp_score>159</Hsp_score> |
542 <Hsp_evalue>1.00223e-05</Hsp_evalue> | 671 <Hsp_evalue>8.38713e-15</Hsp_evalue> |
543 <Hsp_query-from>1</Hsp_query-from> | 672 <Hsp_query-from>27</Hsp_query-from> |
544 <Hsp_query-to>81</Hsp_query-to> | 673 <Hsp_query-to>230</Hsp_query-to> |
545 <Hsp_hit-from>3034</Hsp_hit-from> | 674 <Hsp_hit-from>226</Hsp_hit-from> |
546 <Hsp_hit-to>3114</Hsp_hit-to> | 675 <Hsp_hit-to>296</Hsp_hit-to> |
676 <Hsp_query-frame>3</Hsp_query-frame> | |
677 <Hsp_hit-frame>0</Hsp_hit-frame> | |
678 <Hsp_identity>28</Hsp_identity> | |
679 <Hsp_positive>38</Hsp_positive> | |
680 <Hsp_gaps>3</Hsp_gaps> | |
681 <Hsp_align-len>71</Hsp_align-len> | |
682 <Hsp_qseq>AHHLVAITRGEA--ENCKHRSFGPFEATASESLAKL-CPDYPICLPVPYDVINKVYRYLRTLKKPDVQSPH</Hsp_qseq> | |
683 <Hsp_hseq>AHHLFKITRGDGLTLKPDSRTFGPFEAVLLPKIFVPRVLNYIRGKPIPLTVVNKLFSYLRSLKKRVVINGM</Hsp_hseq> | |
684 <Hsp_midline>AHHL ITRG+ R+FGPFEA + +Y P+P V+NK++ YLR+LKK V + </Hsp_midline> | |
685 </Hsp> | |
686 </Hit_hsps> | |
687 </Hit> | |
688 </Iteration_hits> | |
689 <Iteration_stat> | |
690 <Statistics> | |
691 <Statistics_db-num>16305</Statistics_db-num> | |
692 <Statistics_db-len>2821655</Statistics_db-len> | |
693 <Statistics_hsp-len>51</Statistics_hsp-len> | |
694 <Statistics_eff-space>69653500</Statistics_eff-space> | |
695 <Statistics_kappa>0.041</Statistics_kappa> | |
696 <Statistics_lambda>0.267</Statistics_lambda> | |
697 <Statistics_entropy>0.14</Statistics_entropy> | |
698 </Statistics> | |
699 </Iteration_stat> | |
700 </Iteration> | |
701 <Iteration> | |
702 <Iteration_iter-num>25</Iteration_iter-num> | |
703 <Iteration_query-ID>Query_25</Iteration_query-ID> | |
704 <Iteration_query-def>NODE_25_length_256_cov_0.945274</Iteration_query-def> | |
705 <Iteration_query-len>256</Iteration_query-len> | |
706 <Iteration_hits> | |
707 </Iteration_hits> | |
708 <Iteration_stat> | |
709 <Statistics> | |
710 <Statistics_db-num>16305</Statistics_db-num> | |
711 <Statistics_db-len>2821655</Statistics_db-len> | |
712 <Statistics_hsp-len>50</Statistics_hsp-len> | |
713 <Statistics_eff-space>70224175</Statistics_eff-space> | |
714 <Statistics_kappa>0.041</Statistics_kappa> | |
715 <Statistics_lambda>0.267</Statistics_lambda> | |
716 <Statistics_entropy>0.14</Statistics_entropy> | |
717 </Statistics> | |
718 </Iteration_stat> | |
719 <Iteration_message>No hits found</Iteration_message> | |
720 </Iteration> | |
721 <Iteration> | |
722 <Iteration_iter-num>26</Iteration_iter-num> | |
723 <Iteration_query-ID>Query_26</Iteration_query-ID> | |
724 <Iteration_query-def>NODE_26_length_256_cov_0.895522</Iteration_query-def> | |
725 <Iteration_query-len>256</Iteration_query-len> | |
726 <Iteration_hits> | |
727 </Iteration_hits> | |
728 <Iteration_stat> | |
729 <Statistics> | |
730 <Statistics_db-num>16305</Statistics_db-num> | |
731 <Statistics_db-len>2821655</Statistics_db-len> | |
732 <Statistics_hsp-len>50</Statistics_hsp-len> | |
733 <Statistics_eff-space>70224175</Statistics_eff-space> | |
734 <Statistics_kappa>0.041</Statistics_kappa> | |
735 <Statistics_lambda>0.267</Statistics_lambda> | |
736 <Statistics_entropy>0.14</Statistics_entropy> | |
737 </Statistics> | |
738 </Iteration_stat> | |
739 <Iteration_message>No hits found</Iteration_message> | |
740 </Iteration> | |
741 <Iteration> | |
742 <Iteration_iter-num>27</Iteration_iter-num> | |
743 <Iteration_query-ID>Query_27</Iteration_query-ID> | |
744 <Iteration_query-def>NODE_27_length_254_cov_0.793970</Iteration_query-def> | |
745 <Iteration_query-len>254</Iteration_query-len> | |
746 <Iteration_hits> | |
747 </Iteration_hits> | |
748 <Iteration_stat> | |
749 <Statistics> | |
750 <Statistics_db-num>16305</Statistics_db-num> | |
751 <Statistics_db-len>2821655</Statistics_db-len> | |
752 <Statistics_hsp-len>49</Statistics_hsp-len> | |
753 <Statistics_eff-space>70794850</Statistics_eff-space> | |
754 <Statistics_kappa>0.041</Statistics_kappa> | |
755 <Statistics_lambda>0.267</Statistics_lambda> | |
756 <Statistics_entropy>0.14</Statistics_entropy> | |
757 </Statistics> | |
758 </Iteration_stat> | |
759 <Iteration_message>No hits found</Iteration_message> | |
760 </Iteration> | |
761 <Iteration> | |
762 <Iteration_iter-num>28</Iteration_iter-num> | |
763 <Iteration_query-ID>Query_28</Iteration_query-ID> | |
764 <Iteration_query-def>NODE_28_length_253_cov_1.313131</Iteration_query-def> | |
765 <Iteration_query-len>253</Iteration_query-len> | |
766 <Iteration_hits> | |
767 </Iteration_hits> | |
768 <Iteration_stat> | |
769 <Statistics> | |
770 <Statistics_db-num>16305</Statistics_db-num> | |
771 <Statistics_db-len>2821655</Statistics_db-len> | |
772 <Statistics_hsp-len>49</Statistics_hsp-len> | |
773 <Statistics_eff-space>70794850</Statistics_eff-space> | |
774 <Statistics_kappa>0.041</Statistics_kappa> | |
775 <Statistics_lambda>0.267</Statistics_lambda> | |
776 <Statistics_entropy>0.14</Statistics_entropy> | |
777 </Statistics> | |
778 </Iteration_stat> | |
779 <Iteration_message>No hits found</Iteration_message> | |
780 </Iteration> | |
781 <Iteration> | |
782 <Iteration_iter-num>29</Iteration_iter-num> | |
783 <Iteration_query-ID>Query_29</Iteration_query-ID> | |
784 <Iteration_query-def>NODE_29_length_250_cov_0.851282</Iteration_query-def> | |
785 <Iteration_query-len>250</Iteration_query-len> | |
786 <Iteration_hits> | |
787 <Hit> | |
788 <Hit_num>1</Hit_num> | |
789 <Hit_id>gnl|CDD|278700</Hit_id> | |
790 <Hit_def>pfam00283, Cytochrom_B559, Cytochrome b559, alpha (gene psbE) and beta (gene psbF)subunits. </Hit_def> | |
791 <Hit_accession>278700</Hit_accession> | |
792 <Hit_len>29</Hit_len> | |
793 <Hit_hsps> | |
794 <Hsp> | |
795 <Hsp_num>1</Hsp_num> | |
796 <Hsp_bit-score>42.0012</Hsp_bit-score> | |
797 <Hsp_score>99</Hsp_score> | |
798 <Hsp_evalue>7.31211e-08</Hsp_evalue> | |
799 <Hsp_query-from>79</Hsp_query-from> | |
800 <Hsp_query-to>165</Hsp_query-to> | |
801 <Hsp_hit-from>1</Hsp_hit-from> | |
802 <Hsp_hit-to>29</Hsp_hit-to> | |
547 <Hsp_query-frame>1</Hsp_query-frame> | 803 <Hsp_query-frame>1</Hsp_query-frame> |
548 <Hsp_hit-frame>1</Hsp_hit-frame> | 804 <Hsp_hit-frame>0</Hsp_hit-frame> |
549 <Hsp_identity>17</Hsp_identity> | 805 <Hsp_identity>17</Hsp_identity> |
550 <Hsp_positive>19</Hsp_positive> | 806 <Hsp_positive>19</Hsp_positive> |
551 <Hsp_gaps>0</Hsp_gaps> | 807 <Hsp_gaps>0</Hsp_gaps> |
552 <Hsp_align-len>27</Hsp_align-len> | 808 <Hsp_align-len>29</Hsp_align-len> |
553 <Hsp_qseq>KFMDFIRGVAVIGEGQWGIEMDRWIRF</Hsp_qseq> | 809 <Hsp_qseq>MTIDRTYPIFTVRWLAVHGLAVPTVSFLG</Hsp_qseq> |
554 <Hsp_hseq>KVMDLIRGNATIGRGQWGNDVMDWIRF</Hsp_hseq> | 810 <Hsp_hseq>GERPFSYPITTVRWWAIHALTVPTVFFLG</Hsp_hseq> |
555 <Hsp_midline>K MD IRG A IG GQWG ++ WIRF</Hsp_midline> | 811 <Hsp_midline> +YPI TVRW A+H L VPTV FLG</Hsp_midline> |
556 </Hsp> | 812 </Hsp> |
557 </Hit_hsps> | 813 </Hit_hsps> |
558 </Hit> | 814 </Hit> |
559 </Iteration_hits> | 815 </Iteration_hits> |
560 <Iteration_stat> | 816 <Iteration_stat> |
561 <Statistics> | 817 <Statistics> |
562 <Statistics_db-num>7073</Statistics_db-num> | 818 <Statistics_db-num>16305</Statistics_db-num> |
563 <Statistics_db-len>36804204</Statistics_db-len> | 819 <Statistics_db-len>2821655</Statistics_db-len> |
564 <Statistics_hsp-len>19</Statistics_hsp-len> | 820 <Statistics_hsp-len>48</Statistics_hsp-len> |
565 <Statistics_eff-space>97069448</Statistics_eff-space> | 821 <Statistics_eff-space>71365525</Statistics_eff-space> |
566 <Statistics_kappa>0.133956144488482</Statistics_kappa> | 822 <Statistics_kappa>0.041</Statistics_kappa> |
567 <Statistics_lambda>0.317605957635731</Statistics_lambda> | 823 <Statistics_lambda>0.267</Statistics_lambda> |
568 <Statistics_entropy>0.401214524497119</Statistics_entropy> | 824 <Statistics_entropy>0.14</Statistics_entropy> |
569 </Statistics> | 825 </Statistics> |
570 </Iteration_stat> | 826 </Iteration_stat> |
571 </Iteration> | 827 </Iteration> |
572 <Iteration> | 828 <Iteration> |
573 <Iteration_iter-num>24</Iteration_iter-num> | 829 <Iteration_iter-num>30</Iteration_iter-num> |
574 <Iteration_query-ID>ds2020-482-EDGG-1-Q4_91422</Iteration_query-ID> | 830 <Iteration_query-ID>Query_30</Iteration_query-ID> |
575 <Iteration_query-def>No definition line</Iteration_query-def> | 831 <Iteration_query-def>NODE_30_length_249_cov_1.298969</Iteration_query-def> |
576 <Iteration_query-len>67</Iteration_query-len> | 832 <Iteration_query-len>249</Iteration_query-len> |
577 <Iteration_hits> | 833 <Iteration_hits> |
578 </Iteration_hits> | 834 </Iteration_hits> |
579 <Iteration_stat> | 835 <Iteration_stat> |
580 <Statistics> | 836 <Statistics> |
581 <Statistics_db-num>7073</Statistics_db-num> | 837 <Statistics_db-num>16305</Statistics_db-num> |
582 <Statistics_db-len>36804204</Statistics_db-len> | 838 <Statistics_db-len>2821655</Statistics_db-len> |
583 <Statistics_hsp-len>14</Statistics_hsp-len> | 839 <Statistics_hsp-len>48</Statistics_hsp-len> |
584 <Statistics_eff-space>97352368</Statistics_eff-space> | 840 <Statistics_eff-space>71365525</Statistics_eff-space> |
585 <Statistics_kappa>0.133956144488482</Statistics_kappa> | 841 <Statistics_kappa>0.041</Statistics_kappa> |
586 <Statistics_lambda>0.317605957635731</Statistics_lambda> | 842 <Statistics_lambda>0.267</Statistics_lambda> |
587 <Statistics_entropy>0.401214524497119</Statistics_entropy> | 843 <Statistics_entropy>0.14</Statistics_entropy> |
844 </Statistics> | |
845 </Iteration_stat> | |
846 <Iteration_message>No hits found</Iteration_message> | |
847 </Iteration> | |
848 <Iteration> | |
849 <Iteration_iter-num>31</Iteration_iter-num> | |
850 <Iteration_query-ID>Query_31</Iteration_query-ID> | |
851 <Iteration_query-def>NODE_31_length_249_cov_0.979381</Iteration_query-def> | |
852 <Iteration_query-len>249</Iteration_query-len> | |
853 <Iteration_hits> | |
854 </Iteration_hits> | |
855 <Iteration_stat> | |
856 <Statistics> | |
857 <Statistics_db-num>16305</Statistics_db-num> | |
858 <Statistics_db-len>2821655</Statistics_db-len> | |
859 <Statistics_hsp-len>48</Statistics_hsp-len> | |
860 <Statistics_eff-space>71365525</Statistics_eff-space> | |
861 <Statistics_kappa>0.041</Statistics_kappa> | |
862 <Statistics_lambda>0.267</Statistics_lambda> | |
863 <Statistics_entropy>0.14</Statistics_entropy> | |
864 </Statistics> | |
865 </Iteration_stat> | |
866 <Iteration_message>No hits found</Iteration_message> | |
867 </Iteration> | |
868 <Iteration> | |
869 <Iteration_iter-num>32</Iteration_iter-num> | |
870 <Iteration_query-ID>Query_32</Iteration_query-ID> | |
871 <Iteration_query-def>NODE_32_length_248_cov_0.979275</Iteration_query-def> | |
872 <Iteration_query-len>248</Iteration_query-len> | |
873 <Iteration_hits> | |
874 </Iteration_hits> | |
875 <Iteration_stat> | |
876 <Statistics> | |
877 <Statistics_db-num>16305</Statistics_db-num> | |
878 <Statistics_db-len>2821655</Statistics_db-len> | |
879 <Statistics_hsp-len>48</Statistics_hsp-len> | |
880 <Statistics_eff-space>69326510</Statistics_eff-space> | |
881 <Statistics_kappa>0.041</Statistics_kappa> | |
882 <Statistics_lambda>0.267</Statistics_lambda> | |
883 <Statistics_entropy>0.14</Statistics_entropy> | |
884 </Statistics> | |
885 </Iteration_stat> | |
886 <Iteration_message>No hits found</Iteration_message> | |
887 </Iteration> | |
888 <Iteration> | |
889 <Iteration_iter-num>33</Iteration_iter-num> | |
890 <Iteration_query-ID>Query_33</Iteration_query-ID> | |
891 <Iteration_query-def>NODE_33_length_245_cov_1.000000</Iteration_query-def> | |
892 <Iteration_query-len>245</Iteration_query-len> | |
893 <Iteration_hits> | |
894 </Iteration_hits> | |
895 <Iteration_stat> | |
896 <Statistics> | |
897 <Statistics_db-num>16305</Statistics_db-num> | |
898 <Statistics_db-len>2821655</Statistics_db-len> | |
899 <Statistics_hsp-len>47</Statistics_hsp-len> | |
900 <Statistics_eff-space>69880880</Statistics_eff-space> | |
901 <Statistics_kappa>0.041</Statistics_kappa> | |
902 <Statistics_lambda>0.267</Statistics_lambda> | |
903 <Statistics_entropy>0.14</Statistics_entropy> | |
904 </Statistics> | |
905 </Iteration_stat> | |
906 <Iteration_message>No hits found</Iteration_message> | |
907 </Iteration> | |
908 <Iteration> | |
909 <Iteration_iter-num>34</Iteration_iter-num> | |
910 <Iteration_query-ID>Query_34</Iteration_query-ID> | |
911 <Iteration_query-def>NODE_34_length_245_cov_1.000000</Iteration_query-def> | |
912 <Iteration_query-len>245</Iteration_query-len> | |
913 <Iteration_hits> | |
914 <Hit> | |
915 <Hit_num>1</Hit_num> | |
916 <Hit_id>gnl|CDD|250270</Hit_id> | |
917 <Hit_def>pfam00978, RdRP_2, RNA dependent RNA polymerase. This family may represent an RNA dependent RNA polymerase. The family also contains the following proteins: 2A protein from bromoviruses putative RNA dependent RNA polymerase from tobamoviruses Non structural polyprotein from togaviruses.</Hit_def> | |
918 <Hit_accession>250270</Hit_accession> | |
919 <Hit_len>441</Hit_len> | |
920 <Hit_hsps> | |
921 <Hsp> | |
922 <Hsp_num>1</Hsp_num> | |
923 <Hsp_bit-score>45.7137</Hsp_bit-score> | |
924 <Hsp_score>109</Hsp_score> | |
925 <Hsp_evalue>6.42106e-08</Hsp_evalue> | |
926 <Hsp_query-from>44</Hsp_query-from> | |
927 <Hsp_query-to>211</Hsp_query-to> | |
928 <Hsp_hit-from>164</Hsp_hit-from> | |
929 <Hsp_hit-to>219</Hsp_hit-to> | |
930 <Hsp_query-frame>2</Hsp_query-frame> | |
931 <Hsp_hit-frame>0</Hsp_hit-frame> | |
932 <Hsp_identity>21</Hsp_identity> | |
933 <Hsp_positive>31</Hsp_positive> | |
934 <Hsp_gaps>0</Hsp_gaps> | |
935 <Hsp_align-len>56</Hsp_align-len> | |
936 <Hsp_qseq>KGMCAIFSPIFKELKNRLKSVLDIKYMYADGLRPDQLSERMSQIGAGKYFIENDME</Hsp_qseq> | |
937 <Hsp_hseq>KLVTAYFSPIFRELFERLLYVLKPKVVFPTGMTSSLIAERFEFLDASEDFLEIDFS</Hsp_hseq> | |
938 <Hsp_midline>K + A FSPIF+EL RL VL K ++ G+ ++ER + A + F+E D </Hsp_midline> | |
939 </Hsp> | |
940 </Hit_hsps> | |
941 </Hit> | |
942 </Iteration_hits> | |
943 <Iteration_stat> | |
944 <Statistics> | |
945 <Statistics_db-num>16305</Statistics_db-num> | |
946 <Statistics_db-len>2821655</Statistics_db-len> | |
947 <Statistics_hsp-len>47</Statistics_hsp-len> | |
948 <Statistics_eff-space>69880880</Statistics_eff-space> | |
949 <Statistics_kappa>0.041</Statistics_kappa> | |
950 <Statistics_lambda>0.267</Statistics_lambda> | |
951 <Statistics_entropy>0.14</Statistics_entropy> | |
952 </Statistics> | |
953 </Iteration_stat> | |
954 </Iteration> | |
955 <Iteration> | |
956 <Iteration_iter-num>35</Iteration_iter-num> | |
957 <Iteration_query-ID>Query_35</Iteration_query-ID> | |
958 <Iteration_query-def>NODE_35_length_242_cov_0.818182</Iteration_query-def> | |
959 <Iteration_query-len>242</Iteration_query-len> | |
960 <Iteration_hits> | |
961 </Iteration_hits> | |
962 <Iteration_stat> | |
963 <Statistics> | |
964 <Statistics_db-num>16305</Statistics_db-num> | |
965 <Statistics_db-len>2821655</Statistics_db-len> | |
966 <Statistics_hsp-len>46</Statistics_hsp-len> | |
967 <Statistics_eff-space>70435250</Statistics_eff-space> | |
968 <Statistics_kappa>0.08832702</Statistics_kappa> | |
969 <Statistics_lambda>0.267</Statistics_lambda> | |
970 <Statistics_entropy>0.14</Statistics_entropy> | |
971 </Statistics> | |
972 </Iteration_stat> | |
973 <Iteration_message>No hits found</Iteration_message> | |
974 </Iteration> | |
975 <Iteration> | |
976 <Iteration_iter-num>36</Iteration_iter-num> | |
977 <Iteration_query-ID>Query_36</Iteration_query-ID> | |
978 <Iteration_query-def>NODE_36_length_240_cov_1.259459</Iteration_query-def> | |
979 <Iteration_query-len>240</Iteration_query-len> | |
980 <Iteration_hits> | |
981 </Iteration_hits> | |
982 <Iteration_stat> | |
983 <Statistics> | |
984 <Statistics_db-num>16305</Statistics_db-num> | |
985 <Statistics_db-len>2821655</Statistics_db-len> | |
986 <Statistics_hsp-len>46</Statistics_hsp-len> | |
987 <Statistics_eff-space>70435250</Statistics_eff-space> | |
988 <Statistics_kappa>0.041</Statistics_kappa> | |
989 <Statistics_lambda>0.267</Statistics_lambda> | |
990 <Statistics_entropy>0.14</Statistics_entropy> | |
991 </Statistics> | |
992 </Iteration_stat> | |
993 <Iteration_message>No hits found</Iteration_message> | |
994 </Iteration> | |
995 <Iteration> | |
996 <Iteration_iter-num>37</Iteration_iter-num> | |
997 <Iteration_query-ID>Query_37</Iteration_query-ID> | |
998 <Iteration_query-def>NODE_37_length_239_cov_1.032609</Iteration_query-def> | |
999 <Iteration_query-len>239</Iteration_query-len> | |
1000 <Iteration_hits> | |
1001 </Iteration_hits> | |
1002 <Iteration_stat> | |
1003 <Statistics> | |
1004 <Statistics_db-num>16305</Statistics_db-num> | |
1005 <Statistics_db-len>2821655</Statistics_db-len> | |
1006 <Statistics_hsp-len>45</Statistics_hsp-len> | |
1007 <Statistics_eff-space>70989620</Statistics_eff-space> | |
1008 <Statistics_kappa>0.041</Statistics_kappa> | |
1009 <Statistics_lambda>0.267</Statistics_lambda> | |
1010 <Statistics_entropy>0.14</Statistics_entropy> | |
1011 </Statistics> | |
1012 </Iteration_stat> | |
1013 <Iteration_message>No hits found</Iteration_message> | |
1014 </Iteration> | |
1015 <Iteration> | |
1016 <Iteration_iter-num>38</Iteration_iter-num> | |
1017 <Iteration_query-ID>Query_38</Iteration_query-ID> | |
1018 <Iteration_query-def>NODE_38_length_239_cov_1.032609</Iteration_query-def> | |
1019 <Iteration_query-len>239</Iteration_query-len> | |
1020 <Iteration_hits> | |
1021 </Iteration_hits> | |
1022 <Iteration_stat> | |
1023 <Statistics> | |
1024 <Statistics_db-num>16305</Statistics_db-num> | |
1025 <Statistics_db-len>2821655</Statistics_db-len> | |
1026 <Statistics_hsp-len>45</Statistics_hsp-len> | |
1027 <Statistics_eff-space>70989620</Statistics_eff-space> | |
1028 <Statistics_kappa>0.041</Statistics_kappa> | |
1029 <Statistics_lambda>0.267</Statistics_lambda> | |
1030 <Statistics_entropy>0.14</Statistics_entropy> | |
1031 </Statistics> | |
1032 </Iteration_stat> | |
1033 <Iteration_message>No hits found</Iteration_message> | |
1034 </Iteration> | |
1035 <Iteration> | |
1036 <Iteration_iter-num>39</Iteration_iter-num> | |
1037 <Iteration_query-ID>Query_39</Iteration_query-ID> | |
1038 <Iteration_query-def>NODE_39_length_238_cov_1.038251</Iteration_query-def> | |
1039 <Iteration_query-len>238</Iteration_query-len> | |
1040 <Iteration_hits> | |
1041 </Iteration_hits> | |
1042 <Iteration_stat> | |
1043 <Statistics> | |
1044 <Statistics_db-num>16305</Statistics_db-num> | |
1045 <Statistics_db-len>2821655</Statistics_db-len> | |
1046 <Statistics_hsp-len>45</Statistics_hsp-len> | |
1047 <Statistics_eff-space>70989620</Statistics_eff-space> | |
1048 <Statistics_kappa>0.041</Statistics_kappa> | |
1049 <Statistics_lambda>0.267</Statistics_lambda> | |
1050 <Statistics_entropy>0.14</Statistics_entropy> | |
1051 </Statistics> | |
1052 </Iteration_stat> | |
1053 <Iteration_message>No hits found</Iteration_message> | |
1054 </Iteration> | |
1055 <Iteration> | |
1056 <Iteration_iter-num>40</Iteration_iter-num> | |
1057 <Iteration_query-ID>Query_40</Iteration_query-ID> | |
1058 <Iteration_query-def>NODE_40_length_238_cov_0.879781</Iteration_query-def> | |
1059 <Iteration_query-len>238</Iteration_query-len> | |
1060 <Iteration_hits> | |
1061 </Iteration_hits> | |
1062 <Iteration_stat> | |
1063 <Statistics> | |
1064 <Statistics_db-num>16305</Statistics_db-num> | |
1065 <Statistics_db-len>2821655</Statistics_db-len> | |
1066 <Statistics_hsp-len>45</Statistics_hsp-len> | |
1067 <Statistics_eff-space>70989620</Statistics_eff-space> | |
1068 <Statistics_kappa>0.041</Statistics_kappa> | |
1069 <Statistics_lambda>0.267</Statistics_lambda> | |
1070 <Statistics_entropy>0.14</Statistics_entropy> | |
1071 </Statistics> | |
1072 </Iteration_stat> | |
1073 <Iteration_message>No hits found</Iteration_message> | |
1074 </Iteration> | |
1075 <Iteration> | |
1076 <Iteration_iter-num>41</Iteration_iter-num> | |
1077 <Iteration_query-ID>Query_41</Iteration_query-ID> | |
1078 <Iteration_query-def>NODE_41_length_236_cov_1.049724</Iteration_query-def> | |
1079 <Iteration_query-len>236</Iteration_query-len> | |
1080 <Iteration_hits> | |
1081 </Iteration_hits> | |
1082 <Iteration_stat> | |
1083 <Statistics> | |
1084 <Statistics_db-num>16305</Statistics_db-num> | |
1085 <Statistics_db-len>2821655</Statistics_db-len> | |
1086 <Statistics_hsp-len>45</Statistics_hsp-len> | |
1087 <Statistics_eff-space>68901690</Statistics_eff-space> | |
1088 <Statistics_kappa>0.041</Statistics_kappa> | |
1089 <Statistics_lambda>0.267</Statistics_lambda> | |
1090 <Statistics_entropy>0.14</Statistics_entropy> | |
1091 </Statistics> | |
1092 </Iteration_stat> | |
1093 <Iteration_message>No hits found</Iteration_message> | |
1094 </Iteration> | |
1095 <Iteration> | |
1096 <Iteration_iter-num>42</Iteration_iter-num> | |
1097 <Iteration_query-ID>Query_42</Iteration_query-ID> | |
1098 <Iteration_query-def>NODE_42_length_235_cov_1.855556</Iteration_query-def> | |
1099 <Iteration_query-len>235</Iteration_query-len> | |
1100 <Iteration_hits> | |
1101 </Iteration_hits> | |
1102 <Iteration_stat> | |
1103 <Statistics> | |
1104 <Statistics_db-num>16305</Statistics_db-num> | |
1105 <Statistics_db-len>2821655</Statistics_db-len> | |
1106 <Statistics_hsp-len>45</Statistics_hsp-len> | |
1107 <Statistics_eff-space>68901690</Statistics_eff-space> | |
1108 <Statistics_kappa>0.041</Statistics_kappa> | |
1109 <Statistics_lambda>0.267</Statistics_lambda> | |
1110 <Statistics_entropy>0.14</Statistics_entropy> | |
1111 </Statistics> | |
1112 </Iteration_stat> | |
1113 <Iteration_message>No hits found</Iteration_message> | |
1114 </Iteration> | |
1115 <Iteration> | |
1116 <Iteration_iter-num>43</Iteration_iter-num> | |
1117 <Iteration_query-ID>Query_43</Iteration_query-ID> | |
1118 <Iteration_query-def>NODE_43_length_234_cov_1.061453</Iteration_query-def> | |
1119 <Iteration_query-len>234</Iteration_query-len> | |
1120 <Iteration_hits> | |
1121 </Iteration_hits> | |
1122 <Iteration_stat> | |
1123 <Statistics> | |
1124 <Statistics_db-num>16305</Statistics_db-num> | |
1125 <Statistics_db-len>2821655</Statistics_db-len> | |
1126 <Statistics_hsp-len>45</Statistics_hsp-len> | |
1127 <Statistics_eff-space>68901690</Statistics_eff-space> | |
1128 <Statistics_kappa>0.041</Statistics_kappa> | |
1129 <Statistics_lambda>0.267</Statistics_lambda> | |
1130 <Statistics_entropy>0.14</Statistics_entropy> | |
1131 </Statistics> | |
1132 </Iteration_stat> | |
1133 <Iteration_message>No hits found</Iteration_message> | |
1134 </Iteration> | |
1135 <Iteration> | |
1136 <Iteration_iter-num>44</Iteration_iter-num> | |
1137 <Iteration_query-ID>Query_44</Iteration_query-ID> | |
1138 <Iteration_query-def>NODE_44_length_232_cov_1.073446</Iteration_query-def> | |
1139 <Iteration_query-len>232</Iteration_query-len> | |
1140 <Iteration_hits> | |
1141 </Iteration_hits> | |
1142 <Iteration_stat> | |
1143 <Statistics> | |
1144 <Statistics_db-num>16305</Statistics_db-num> | |
1145 <Statistics_db-len>2821655</Statistics_db-len> | |
1146 <Statistics_hsp-len>44</Statistics_hsp-len> | |
1147 <Statistics_eff-space>69439755</Statistics_eff-space> | |
1148 <Statistics_kappa>0.041</Statistics_kappa> | |
1149 <Statistics_lambda>0.267</Statistics_lambda> | |
1150 <Statistics_entropy>0.14</Statistics_entropy> | |
1151 </Statistics> | |
1152 </Iteration_stat> | |
1153 <Iteration_message>No hits found</Iteration_message> | |
1154 </Iteration> | |
1155 <Iteration> | |
1156 <Iteration_iter-num>45</Iteration_iter-num> | |
1157 <Iteration_query-ID>Query_45</Iteration_query-ID> | |
1158 <Iteration_query-def>NODE_45_length_232_cov_1.073446</Iteration_query-def> | |
1159 <Iteration_query-len>232</Iteration_query-len> | |
1160 <Iteration_hits> | |
1161 </Iteration_hits> | |
1162 <Iteration_stat> | |
1163 <Statistics> | |
1164 <Statistics_db-num>16305</Statistics_db-num> | |
1165 <Statistics_db-len>2821655</Statistics_db-len> | |
1166 <Statistics_hsp-len>44</Statistics_hsp-len> | |
1167 <Statistics_eff-space>69439755</Statistics_eff-space> | |
1168 <Statistics_kappa>0.041</Statistics_kappa> | |
1169 <Statistics_lambda>0.267</Statistics_lambda> | |
1170 <Statistics_entropy>0.14</Statistics_entropy> | |
1171 </Statistics> | |
1172 </Iteration_stat> | |
1173 <Iteration_message>No hits found</Iteration_message> | |
1174 </Iteration> | |
1175 <Iteration> | |
1176 <Iteration_iter-num>46</Iteration_iter-num> | |
1177 <Iteration_query-ID>Query_46</Iteration_query-ID> | |
1178 <Iteration_query-def>NODE_46_length_229_cov_1.091954</Iteration_query-def> | |
1179 <Iteration_query-len>229</Iteration_query-len> | |
1180 <Iteration_hits> | |
1181 <Hit> | |
1182 <Hit_num>1</Hit_num> | |
1183 <Hit_id>gnl|CDD|306604</Hit_id> | |
1184 <Hit_def>pfam00124, Photo_RC, Photosynthetic reaction centre protein. </Hit_def> | |
1185 <Hit_accession>306604</Hit_accession> | |
1186 <Hit_len>258</Hit_len> | |
1187 <Hit_hsps> | |
1188 <Hsp> | |
1189 <Hsp_num>1</Hsp_num> | |
1190 <Hsp_bit-score>86.1436</Hsp_bit-score> | |
1191 <Hsp_score>214</Hsp_score> | |
1192 <Hsp_evalue>4.26406e-23</Hsp_evalue> | |
1193 <Hsp_query-from>24</Hsp_query-from> | |
1194 <Hsp_query-to>194</Hsp_query-to> | |
1195 <Hsp_hit-from>87</Hsp_hit-from> | |
1196 <Hsp_hit-to>143</Hsp_hit-to> | |
1197 <Hsp_query-frame>-3</Hsp_query-frame> | |
1198 <Hsp_hit-frame>0</Hsp_hit-frame> | |
1199 <Hsp_identity>25</Hsp_identity> | |
1200 <Hsp_positive>36</Hsp_positive> | |
1201 <Hsp_gaps>0</Hsp_gaps> | |
1202 <Hsp_align-len>57</Hsp_align-len> | |
1203 <Hsp_qseq>ELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQA</Hsp_qseq> | |
1204 <Hsp_hseq>EIARKLGMGPHIAWAFSAAIAAYLSLGLIRPILMGSWSEGFPLGIFPHLDWTSNFSY</Hsp_hseq> | |
1205 <Hsp_midline>E++ +LGM P IA A+SA +AA ++ LI PI GS+S+G PLGI ++ F </Hsp_midline> | |
1206 </Hsp> | |
1207 </Hit_hsps> | |
1208 </Hit> | |
1209 </Iteration_hits> | |
1210 <Iteration_stat> | |
1211 <Statistics> | |
1212 <Statistics_db-num>16305</Statistics_db-num> | |
1213 <Statistics_db-len>2821655</Statistics_db-len> | |
1214 <Statistics_hsp-len>43</Statistics_hsp-len> | |
1215 <Statistics_eff-space>69977820</Statistics_eff-space> | |
1216 <Statistics_kappa>0.041</Statistics_kappa> | |
1217 <Statistics_lambda>0.267</Statistics_lambda> | |
1218 <Statistics_entropy>0.14</Statistics_entropy> | |
1219 </Statistics> | |
1220 </Iteration_stat> | |
1221 </Iteration> | |
1222 <Iteration> | |
1223 <Iteration_iter-num>47</Iteration_iter-num> | |
1224 <Iteration_query-ID>Query_47</Iteration_query-ID> | |
1225 <Iteration_query-def>NODE_47_length_229_cov_0.816092</Iteration_query-def> | |
1226 <Iteration_query-len>229</Iteration_query-len> | |
1227 <Iteration_hits> | |
1228 <Hit> | |
1229 <Hit_num>1</Hit_num> | |
1230 <Hit_id>gnl|CDD|306687</Hit_id> | |
1231 <Hit_def>pfam00223, PsaA_PsaB, Photosystem I psaA/psaB protein. </Hit_def> | |
1232 <Hit_accession>306687</Hit_accession> | |
1233 <Hit_len>717</Hit_len> | |
1234 <Hit_hsps> | |
1235 <Hsp> | |
1236 <Hsp_num>1</Hsp_num> | |
1237 <Hsp_bit-score>61.3066</Hsp_bit-score> | |
1238 <Hsp_score>149</Hsp_score> | |
1239 <Hsp_evalue>1.79906e-13</Hsp_evalue> | |
1240 <Hsp_query-from>124</Hsp_query-from> | |
1241 <Hsp_query-to>222</Hsp_query-to> | |
1242 <Hsp_hit-from>1</Hsp_hit-from> | |
1243 <Hsp_hit-to>33</Hsp_hit-to> | |
1244 <Hsp_query-frame>1</Hsp_query-frame> | |
1245 <Hsp_hit-frame>0</Hsp_hit-frame> | |
1246 <Hsp_identity>22</Hsp_identity> | |
1247 <Hsp_positive>24</Hsp_positive> | |
1248 <Hsp_gaps>0</Hsp_gaps> | |
1249 <Hsp_align-len>33</Hsp_align-len> | |
1250 <Hsp_qseq>FSRTLAKGPDTTTWIWNLHADAHDLNSQTHPTQ</Hsp_qseq> | |
1251 <Hsp_hseq>FSRDLAQGPKTTTWIWNLHATAHDFESHDGDTE</Hsp_hseq> | |
1252 <Hsp_midline>FSR LA+GP TTTWIWNLHA AHD S T+</Hsp_midline> | |
1253 </Hsp> | |
1254 </Hit_hsps> | |
1255 </Hit> | |
1256 </Iteration_hits> | |
1257 <Iteration_stat> | |
1258 <Statistics> | |
1259 <Statistics_db-num>16305</Statistics_db-num> | |
1260 <Statistics_db-len>2821655</Statistics_db-len> | |
1261 <Statistics_hsp-len>43</Statistics_hsp-len> | |
1262 <Statistics_eff-space>69977820</Statistics_eff-space> | |
1263 <Statistics_kappa>0.041</Statistics_kappa> | |
1264 <Statistics_lambda>0.267</Statistics_lambda> | |
1265 <Statistics_entropy>0.14</Statistics_entropy> | |
1266 </Statistics> | |
1267 </Iteration_stat> | |
1268 </Iteration> | |
1269 <Iteration> | |
1270 <Iteration_iter-num>48</Iteration_iter-num> | |
1271 <Iteration_query-ID>Query_48</Iteration_query-ID> | |
1272 <Iteration_query-def>NODE_48_length_227_cov_1.273256</Iteration_query-def> | |
1273 <Iteration_query-len>227</Iteration_query-len> | |
1274 <Iteration_hits> | |
1275 </Iteration_hits> | |
1276 <Iteration_stat> | |
1277 <Statistics> | |
1278 <Statistics_db-num>16305</Statistics_db-num> | |
1279 <Statistics_db-len>2821655</Statistics_db-len> | |
1280 <Statistics_hsp-len>42</Statistics_hsp-len> | |
1281 <Statistics_eff-space>70515885</Statistics_eff-space> | |
1282 <Statistics_kappa>0.041</Statistics_kappa> | |
1283 <Statistics_lambda>0.267</Statistics_lambda> | |
1284 <Statistics_entropy>0.14</Statistics_entropy> | |
1285 </Statistics> | |
1286 </Iteration_stat> | |
1287 <Iteration_message>No hits found</Iteration_message> | |
1288 </Iteration> | |
1289 <Iteration> | |
1290 <Iteration_iter-num>49</Iteration_iter-num> | |
1291 <Iteration_query-ID>Query_49</Iteration_query-ID> | |
1292 <Iteration_query-def>NODE_49_length_227_cov_1.017442</Iteration_query-def> | |
1293 <Iteration_query-len>227</Iteration_query-len> | |
1294 <Iteration_hits> | |
1295 </Iteration_hits> | |
1296 <Iteration_stat> | |
1297 <Statistics> | |
1298 <Statistics_db-num>16305</Statistics_db-num> | |
1299 <Statistics_db-len>2821655</Statistics_db-len> | |
1300 <Statistics_hsp-len>42</Statistics_hsp-len> | |
1301 <Statistics_eff-space>70515885</Statistics_eff-space> | |
1302 <Statistics_kappa>0.041</Statistics_kappa> | |
1303 <Statistics_lambda>0.267</Statistics_lambda> | |
1304 <Statistics_entropy>0.14</Statistics_entropy> | |
1305 </Statistics> | |
1306 </Iteration_stat> | |
1307 <Iteration_message>No hits found</Iteration_message> | |
1308 </Iteration> | |
1309 <Iteration> | |
1310 <Iteration_iter-num>50</Iteration_iter-num> | |
1311 <Iteration_query-ID>Query_50</Iteration_query-ID> | |
1312 <Iteration_query-def>NODE_50_length_226_cov_2.269006</Iteration_query-def> | |
1313 <Iteration_query-len>226</Iteration_query-len> | |
1314 <Iteration_hits> | |
1315 <Hit> | |
1316 <Hit_num>1</Hit_num> | |
1317 <Hit_id>gnl|CDD|306845</Hit_id> | |
1318 <Hit_def>pfam00421, PSII, Photosystem II protein. </Hit_def> | |
1319 <Hit_accession>306845</Hit_accession> | |
1320 <Hit_len>500</Hit_len> | |
1321 <Hit_hsps> | |
1322 <Hsp> | |
1323 <Hsp_num>1</Hsp_num> | |
1324 <Hsp_bit-score>89.1064</Hsp_bit-score> | |
1325 <Hsp_score>221</Hsp_score> | |
1326 <Hsp_evalue>2.77182e-23</Hsp_evalue> | |
1327 <Hsp_query-from>31</Hsp_query-from> | |
1328 <Hsp_query-to>213</Hsp_query-to> | |
1329 <Hsp_hit-from>160</Hsp_hit-from> | |
1330 <Hsp_hit-to>227</Hsp_hit-to> | |
1331 <Hsp_query-frame>1</Hsp_query-frame> | |
1332 <Hsp_hit-frame>0</Hsp_hit-frame> | |
1333 <Hsp_identity>41</Hsp_identity> | |
1334 <Hsp_positive>45</Hsp_positive> | |
1335 <Hsp_gaps>7</Hsp_gaps> | |
1336 <Hsp_align-len>68</Hsp_align-len> | |
1337 <Hsp_qseq>GPGIWVSDP-------YGLTGTVQPVNPAWGVEGFDPFVPGGIASHHIAAGTLGILAGLFHLSVRSPQ</Hsp_qseq> | |
1338 <Hsp_hseq>GLGTWVSDPTLDPGVIYGYTGHVQPVAPVWGAEGFSPFGPGGIVGHHIAAGILGIIGGIFHITTRPPG</Hsp_hseq> | |
1339 <Hsp_midline>G G WVSDP YG TG VQPV P WG EGF PF PGGI HHIAAG LGI+ G+FH++ R P </Hsp_midline> | |
1340 </Hsp> | |
1341 </Hit_hsps> | |
1342 </Hit> | |
1343 </Iteration_hits> | |
1344 <Iteration_stat> | |
1345 <Statistics> | |
1346 <Statistics_db-num>16305</Statistics_db-num> | |
1347 <Statistics_db-len>2821655</Statistics_db-len> | |
1348 <Statistics_hsp-len>42</Statistics_hsp-len> | |
1349 <Statistics_eff-space>70515885</Statistics_eff-space> | |
1350 <Statistics_kappa>0.041</Statistics_kappa> | |
1351 <Statistics_lambda>0.267</Statistics_lambda> | |
1352 <Statistics_entropy>0.14</Statistics_entropy> | |
1353 </Statistics> | |
1354 </Iteration_stat> | |
1355 </Iteration> | |
1356 <Iteration> | |
1357 <Iteration_iter-num>51</Iteration_iter-num> | |
1358 <Iteration_query-ID>Query_51</Iteration_query-ID> | |
1359 <Iteration_query-def>NODE_51_length_225_cov_1.117647</Iteration_query-def> | |
1360 <Iteration_query-len>225</Iteration_query-len> | |
1361 <Iteration_hits> | |
1362 </Iteration_hits> | |
1363 <Iteration_stat> | |
1364 <Statistics> | |
1365 <Statistics_db-num>16305</Statistics_db-num> | |
1366 <Statistics_db-len>2821655</Statistics_db-len> | |
1367 <Statistics_hsp-len>42</Statistics_hsp-len> | |
1368 <Statistics_eff-space>70515885</Statistics_eff-space> | |
1369 <Statistics_kappa>0.041</Statistics_kappa> | |
1370 <Statistics_lambda>0.267</Statistics_lambda> | |
1371 <Statistics_entropy>0.14</Statistics_entropy> | |
1372 </Statistics> | |
1373 </Iteration_stat> | |
1374 <Iteration_message>No hits found</Iteration_message> | |
1375 </Iteration> | |
1376 <Iteration> | |
1377 <Iteration_iter-num>52</Iteration_iter-num> | |
1378 <Iteration_query-ID>Query_52</Iteration_query-ID> | |
1379 <Iteration_query-def>NODE_52_length_225_cov_0.917647</Iteration_query-def> | |
1380 <Iteration_query-len>225</Iteration_query-len> | |
1381 <Iteration_hits> | |
1382 </Iteration_hits> | |
1383 <Iteration_stat> | |
1384 <Statistics> | |
1385 <Statistics_db-num>16305</Statistics_db-num> | |
1386 <Statistics_db-len>2821655</Statistics_db-len> | |
1387 <Statistics_hsp-len>42</Statistics_hsp-len> | |
1388 <Statistics_eff-space>70515885</Statistics_eff-space> | |
1389 <Statistics_kappa>0.041</Statistics_kappa> | |
1390 <Statistics_lambda>0.267</Statistics_lambda> | |
1391 <Statistics_entropy>0.14</Statistics_entropy> | |
1392 </Statistics> | |
1393 </Iteration_stat> | |
1394 <Iteration_message>No hits found</Iteration_message> | |
1395 </Iteration> | |
1396 <Iteration> | |
1397 <Iteration_iter-num>53</Iteration_iter-num> | |
1398 <Iteration_query-ID>Query_53</Iteration_query-ID> | |
1399 <Iteration_query-def>NODE_53_length_223_cov_3.303571</Iteration_query-def> | |
1400 <Iteration_query-len>223</Iteration_query-len> | |
1401 <Iteration_hits> | |
1402 </Iteration_hits> | |
1403 <Iteration_stat> | |
1404 <Statistics> | |
1405 <Statistics_db-num>16305</Statistics_db-num> | |
1406 <Statistics_db-len>2821655</Statistics_db-len> | |
1407 <Statistics_hsp-len>41</Statistics_hsp-len> | |
1408 <Statistics_eff-space>71053950</Statistics_eff-space> | |
1409 <Statistics_kappa>0.041</Statistics_kappa> | |
1410 <Statistics_lambda>0.267</Statistics_lambda> | |
1411 <Statistics_entropy>0.14</Statistics_entropy> | |
1412 </Statistics> | |
1413 </Iteration_stat> | |
1414 <Iteration_message>No hits found</Iteration_message> | |
1415 </Iteration> | |
1416 <Iteration> | |
1417 <Iteration_iter-num>54</Iteration_iter-num> | |
1418 <Iteration_query-ID>Query_54</Iteration_query-ID> | |
1419 <Iteration_query-def>NODE_54_length_223_cov_1.803571</Iteration_query-def> | |
1420 <Iteration_query-len>223</Iteration_query-len> | |
1421 <Iteration_hits> | |
1422 </Iteration_hits> | |
1423 <Iteration_stat> | |
1424 <Statistics> | |
1425 <Statistics_db-num>16305</Statistics_db-num> | |
1426 <Statistics_db-len>2821655</Statistics_db-len> | |
1427 <Statistics_hsp-len>41</Statistics_hsp-len> | |
1428 <Statistics_eff-space>71053950</Statistics_eff-space> | |
1429 <Statistics_kappa>0.041</Statistics_kappa> | |
1430 <Statistics_lambda>0.267</Statistics_lambda> | |
1431 <Statistics_entropy>0.14</Statistics_entropy> | |
1432 </Statistics> | |
1433 </Iteration_stat> | |
1434 <Iteration_message>No hits found</Iteration_message> | |
1435 </Iteration> | |
1436 <Iteration> | |
1437 <Iteration_iter-num>55</Iteration_iter-num> | |
1438 <Iteration_query-ID>Query_55</Iteration_query-ID> | |
1439 <Iteration_query-def>NODE_55_length_216_cov_1.596273</Iteration_query-def> | |
1440 <Iteration_query-len>216</Iteration_query-len> | |
1441 <Iteration_hits> | |
1442 </Iteration_hits> | |
1443 <Iteration_stat> | |
1444 <Statistics> | |
1445 <Statistics_db-num>16305</Statistics_db-num> | |
1446 <Statistics_db-len>2821655</Statistics_db-len> | |
1447 <Statistics_hsp-len>40</Statistics_hsp-len> | |
1448 <Statistics_eff-space>69422560</Statistics_eff-space> | |
1449 <Statistics_kappa>0.041</Statistics_kappa> | |
1450 <Statistics_lambda>0.267</Statistics_lambda> | |
1451 <Statistics_entropy>0.14</Statistics_entropy> | |
1452 </Statistics> | |
1453 </Iteration_stat> | |
1454 <Iteration_message>No hits found</Iteration_message> | |
1455 </Iteration> | |
1456 <Iteration> | |
1457 <Iteration_iter-num>56</Iteration_iter-num> | |
1458 <Iteration_query-ID>Query_56</Iteration_query-ID> | |
1459 <Iteration_query-def>NODE_56_length_216_cov_1.180124</Iteration_query-def> | |
1460 <Iteration_query-len>216</Iteration_query-len> | |
1461 <Iteration_hits> | |
1462 <Hit> | |
1463 <Hit_num>1</Hit_num> | |
1464 <Hit_id>gnl|CDD|306795</Hit_id> | |
1465 <Hit_def>pfam00361, Proton_antipo_M, Proton-conducting membrane transporter. This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.</Hit_def> | |
1466 <Hit_accession>306795</Hit_accession> | |
1467 <Hit_len>291</Hit_len> | |
1468 <Hit_hsps> | |
1469 <Hsp> | |
1470 <Hsp_num>1</Hsp_num> | |
1471 <Hsp_bit-score>42.6815</Hsp_bit-score> | |
1472 <Hsp_score>101</Hsp_score> | |
1473 <Hsp_evalue>5.23486e-07</Hsp_evalue> | |
1474 <Hsp_query-from>18</Hsp_query-from> | |
1475 <Hsp_query-to>188</Hsp_query-to> | |
1476 <Hsp_hit-from>52</Hsp_hit-from> | |
1477 <Hsp_hit-to>110</Hsp_hit-to> | |
1478 <Hsp_query-frame>3</Hsp_query-frame> | |
1479 <Hsp_hit-frame>0</Hsp_hit-frame> | |
1480 <Hsp_identity>16</Hsp_identity> | |
1481 <Hsp_positive>28</Hsp_positive> | |
1482 <Hsp_gaps>4</Hsp_gaps> | |
1483 <Hsp_align-len>60</Hsp_align-len> | |
1484 <Hsp_qseq>GLCGLFGSTEPTLNFEILTNQSYPVALEI---IFYIGFFLAFAVKLPIIPLHTWLPDTHE</Hsp_qseq> | |
1485 <Hsp_hseq>GISLMYNYTG-TLSFTELSKALFNGLNSWGLLLLFLLILVGFLFKSAQVPFHTWLPDAYE</Hsp_hseq> | |
1486 <Hsp_midline>G+ ++ T TL+F L+ + + ++ + F K +P HTWLPD +E</Hsp_midline> | |
1487 </Hsp> | |
1488 </Hit_hsps> | |
1489 </Hit> | |
1490 </Iteration_hits> | |
1491 <Iteration_stat> | |
1492 <Statistics> | |
1493 <Statistics_db-num>16305</Statistics_db-num> | |
1494 <Statistics_db-len>2821655</Statistics_db-len> | |
1495 <Statistics_hsp-len>40</Statistics_hsp-len> | |
1496 <Statistics_eff-space>69422560</Statistics_eff-space> | |
1497 <Statistics_kappa>0.041</Statistics_kappa> | |
1498 <Statistics_lambda>0.267</Statistics_lambda> | |
1499 <Statistics_entropy>0.14</Statistics_entropy> | |
1500 </Statistics> | |
1501 </Iteration_stat> | |
1502 </Iteration> | |
1503 <Iteration> | |
1504 <Iteration_iter-num>57</Iteration_iter-num> | |
1505 <Iteration_query-ID>Query_57</Iteration_query-ID> | |
1506 <Iteration_query-def>NODE_57_length_216_cov_0.869565</Iteration_query-def> | |
1507 <Iteration_query-len>216</Iteration_query-len> | |
1508 <Iteration_hits> | |
1509 </Iteration_hits> | |
1510 <Iteration_stat> | |
1511 <Statistics> | |
1512 <Statistics_db-num>16305</Statistics_db-num> | |
1513 <Statistics_db-len>2821655</Statistics_db-len> | |
1514 <Statistics_hsp-len>40</Statistics_hsp-len> | |
1515 <Statistics_eff-space>69422560</Statistics_eff-space> | |
1516 <Statistics_kappa>0.041</Statistics_kappa> | |
1517 <Statistics_lambda>0.267</Statistics_lambda> | |
1518 <Statistics_entropy>0.14</Statistics_entropy> | |
1519 </Statistics> | |
1520 </Iteration_stat> | |
1521 <Iteration_message>No hits found</Iteration_message> | |
1522 </Iteration> | |
1523 <Iteration> | |
1524 <Iteration_iter-num>58</Iteration_iter-num> | |
1525 <Iteration_query-ID>Query_58</Iteration_query-ID> | |
1526 <Iteration_query-def>NODE_58_length_215_cov_1.668750</Iteration_query-def> | |
1527 <Iteration_query-len>215</Iteration_query-len> | |
1528 <Iteration_hits> | |
1529 </Iteration_hits> | |
1530 <Iteration_stat> | |
1531 <Statistics> | |
1532 <Statistics_db-num>16305</Statistics_db-num> | |
1533 <Statistics_db-len>2821655</Statistics_db-len> | |
1534 <Statistics_hsp-len>39</Statistics_hsp-len> | |
1535 <Statistics_eff-space>69944320</Statistics_eff-space> | |
1536 <Statistics_kappa>0.041</Statistics_kappa> | |
1537 <Statistics_lambda>0.267</Statistics_lambda> | |
1538 <Statistics_entropy>0.14</Statistics_entropy> | |
1539 </Statistics> | |
1540 </Iteration_stat> | |
1541 <Iteration_message>No hits found</Iteration_message> | |
1542 </Iteration> | |
1543 <Iteration> | |
1544 <Iteration_iter-num>59</Iteration_iter-num> | |
1545 <Iteration_query-ID>Query_59</Iteration_query-ID> | |
1546 <Iteration_query-def>NODE_59_length_215_cov_1.187500</Iteration_query-def> | |
1547 <Iteration_query-len>215</Iteration_query-len> | |
1548 <Iteration_hits> | |
1549 </Iteration_hits> | |
1550 <Iteration_stat> | |
1551 <Statistics> | |
1552 <Statistics_db-num>16305</Statistics_db-num> | |
1553 <Statistics_db-len>2821655</Statistics_db-len> | |
1554 <Statistics_hsp-len>39</Statistics_hsp-len> | |
1555 <Statistics_eff-space>69944320</Statistics_eff-space> | |
1556 <Statistics_kappa>0.041</Statistics_kappa> | |
1557 <Statistics_lambda>0.267</Statistics_lambda> | |
1558 <Statistics_entropy>0.14</Statistics_entropy> | |
1559 </Statistics> | |
1560 </Iteration_stat> | |
1561 <Iteration_message>No hits found</Iteration_message> | |
1562 </Iteration> | |
1563 <Iteration> | |
1564 <Iteration_iter-num>60</Iteration_iter-num> | |
1565 <Iteration_query-ID>Query_60</Iteration_query-ID> | |
1566 <Iteration_query-def>NODE_60_length_215_cov_0.843750</Iteration_query-def> | |
1567 <Iteration_query-len>215</Iteration_query-len> | |
1568 <Iteration_hits> | |
1569 </Iteration_hits> | |
1570 <Iteration_stat> | |
1571 <Statistics> | |
1572 <Statistics_db-num>16305</Statistics_db-num> | |
1573 <Statistics_db-len>2821655</Statistics_db-len> | |
1574 <Statistics_hsp-len>39</Statistics_hsp-len> | |
1575 <Statistics_eff-space>69944320</Statistics_eff-space> | |
1576 <Statistics_kappa>0.041</Statistics_kappa> | |
1577 <Statistics_lambda>0.267</Statistics_lambda> | |
1578 <Statistics_entropy>0.14</Statistics_entropy> | |
1579 </Statistics> | |
1580 </Iteration_stat> | |
1581 <Iteration_message>No hits found</Iteration_message> | |
1582 </Iteration> | |
1583 <Iteration> | |
1584 <Iteration_iter-num>61</Iteration_iter-num> | |
1585 <Iteration_query-ID>Query_61</Iteration_query-ID> | |
1586 <Iteration_query-def>NODE_61_length_214_cov_1.232704</Iteration_query-def> | |
1587 <Iteration_query-len>214</Iteration_query-len> | |
1588 <Iteration_hits> | |
1589 </Iteration_hits> | |
1590 <Iteration_stat> | |
1591 <Statistics> | |
1592 <Statistics_db-num>16305</Statistics_db-num> | |
1593 <Statistics_db-len>2821655</Statistics_db-len> | |
1594 <Statistics_hsp-len>39</Statistics_hsp-len> | |
1595 <Statistics_eff-space>69944320</Statistics_eff-space> | |
1596 <Statistics_kappa>0.041</Statistics_kappa> | |
1597 <Statistics_lambda>0.267</Statistics_lambda> | |
1598 <Statistics_entropy>0.14</Statistics_entropy> | |
1599 </Statistics> | |
1600 </Iteration_stat> | |
1601 <Iteration_message>No hits found</Iteration_message> | |
1602 </Iteration> | |
1603 <Iteration> | |
1604 <Iteration_iter-num>62</Iteration_iter-num> | |
1605 <Iteration_query-ID>Query_62</Iteration_query-ID> | |
1606 <Iteration_query-def>NODE_62_length_213_cov_0.936709</Iteration_query-def> | |
1607 <Iteration_query-len>213</Iteration_query-len> | |
1608 <Iteration_hits> | |
1609 </Iteration_hits> | |
1610 <Iteration_stat> | |
1611 <Statistics> | |
1612 <Statistics_db-num>16305</Statistics_db-num> | |
1613 <Statistics_db-len>2821655</Statistics_db-len> | |
1614 <Statistics_hsp-len>39</Statistics_hsp-len> | |
1615 <Statistics_eff-space>69944320</Statistics_eff-space> | |
1616 <Statistics_kappa>0.041</Statistics_kappa> | |
1617 <Statistics_lambda>0.267</Statistics_lambda> | |
1618 <Statistics_entropy>0.14</Statistics_entropy> | |
1619 </Statistics> | |
1620 </Iteration_stat> | |
1621 <Iteration_message>No hits found</Iteration_message> | |
1622 </Iteration> | |
1623 <Iteration> | |
1624 <Iteration_iter-num>63</Iteration_iter-num> | |
1625 <Iteration_query-ID>Query_63</Iteration_query-ID> | |
1626 <Iteration_query-def>NODE_63_length_210_cov_1.225806</Iteration_query-def> | |
1627 <Iteration_query-len>210</Iteration_query-len> | |
1628 <Iteration_hits> | |
1629 </Iteration_hits> | |
1630 <Iteration_stat> | |
1631 <Statistics> | |
1632 <Statistics_db-num>16305</Statistics_db-num> | |
1633 <Statistics_db-len>2821655</Statistics_db-len> | |
1634 <Statistics_hsp-len>38</Statistics_hsp-len> | |
1635 <Statistics_eff-space>70466080</Statistics_eff-space> | |
1636 <Statistics_kappa>0.041</Statistics_kappa> | |
1637 <Statistics_lambda>0.267</Statistics_lambda> | |
1638 <Statistics_entropy>0.14</Statistics_entropy> | |
1639 </Statistics> | |
1640 </Iteration_stat> | |
1641 <Iteration_message>No hits found</Iteration_message> | |
1642 </Iteration> | |
1643 <Iteration> | |
1644 <Iteration_iter-num>64</Iteration_iter-num> | |
1645 <Iteration_query-ID>Query_64</Iteration_query-ID> | |
1646 <Iteration_query-def>NODE_64_length_208_cov_1.019608</Iteration_query-def> | |
1647 <Iteration_query-len>208</Iteration_query-len> | |
1648 <Iteration_hits> | |
1649 </Iteration_hits> | |
1650 <Iteration_stat> | |
1651 <Statistics> | |
1652 <Statistics_db-num>16305</Statistics_db-num> | |
1653 <Statistics_db-len>2821655</Statistics_db-len> | |
1654 <Statistics_hsp-len>37</Statistics_hsp-len> | |
1655 <Statistics_eff-space>70987840</Statistics_eff-space> | |
1656 <Statistics_kappa>0.041</Statistics_kappa> | |
1657 <Statistics_lambda>0.267</Statistics_lambda> | |
1658 <Statistics_entropy>0.14</Statistics_entropy> | |
588 </Statistics> | 1659 </Statistics> |
589 </Iteration_stat> | 1660 </Iteration_stat> |
590 <Iteration_message>No hits found</Iteration_message> | 1661 <Iteration_message>No hits found</Iteration_message> |
591 </Iteration> | 1662 </Iteration> |
592 </BlastOutput_iterations> | 1663 </BlastOutput_iterations> |
593 </BlastOutput> | 1664 </BlastOutput> |
1665 |