Mercurial > repos > iuc > virannot_blast2tsv

comparison rps2tsv.py @ 3:f8ebd1e802d7 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 16701bfbffd605805e847897799251ab748f559f
author iuc
date Sun, 08 Sep 2024 14:09:19 +0000
parents 77c3ef9b0ed7
children
comparison
equal deleted inserted replaced
2:77c3ef9b0ed7 3:f8ebd1e802d7
46 hit_endQ = hit.query_end 46 hit_endQ = hit.query_end
47 hsp["frame"] = hit_frame 47 hsp["frame"] = hit_frame
48 hsp["evalue"] = hit_evalue 48 hsp["evalue"] = hit_evalue
49 hsp["startQ"] = hit_startQ 49 hsp["startQ"] = hit_startQ
50 hsp["endQ"] = hit_endQ 50 hsp["endQ"] = hit_endQ
51 hsp["query_id"] = blast_record.query_id 51 hsp["query_id"] = blast_record.query
52 hsp["cdd_id"] = aln.hit_def.split(",")[0] 52 hsp["cdd_id"] = aln.hit_def.split(",")[0]
53 hsp["hit_id"] = aln.hit_id 53 hsp["hit_id"] = aln.hit_id
54 hsp["query_length"] = blast_record.query_length # length of the query 54 hsp["query_length"] = blast_record.query_length # length of the query
55 hsp["description"] = aln.hit_def 55 hsp["description"] = aln.hit_def
56 hsp["accession"] = aln.accession 56 hsp["accession"] = aln.accession