Mercurial > repos > iuc > virannot_blast2tsv

comparison test-data/rps_test.xml @ 3:f8ebd1e802d7 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 16701bfbffd605805e847897799251ab748f559f
author iuc
date Sun, 08 Sep 2024 14:09:19 +0000
parents 77c3ef9b0ed7
children
comparison
equal deleted inserted replaced
2:77c3ef9b0ed7 3:f8ebd1e802d7
192 <Statistics_entropy>0.14</Statistics_entropy> 192 <Statistics_entropy>0.14</Statistics_entropy>
193 </Statistics> 193 </Statistics>
194 </Iteration_stat> 194 </Iteration_stat>
195 </Iteration> 195 </Iteration>
196 <Iteration> 196 <Iteration>
197 <Iteration_iter-num>4</Iteration_iter-num>
198 <Iteration_query-ID>Query_4</Iteration_query-ID>
199 <Iteration_query-def>ds2020-267_4</Iteration_query-def>
200 <Iteration_query-len>2297</Iteration_query-len>
201 <Iteration_hits>
202 <Hit>
203 <Hit_num>1</Hit_num>
204 <Hit_id>gnl|CDD|280316</Hit_id>
205 <Hit_def>pfam02123, RdRP_4, Viral RNA-directed RNA-polymerase. This family includes RNA-dependent RNA polymerase proteins (RdRPs) from Luteovirus, Totivirus and Rotavirus.</Hit_def>
206 <Hit_accession>280316</Hit_accession>
207 <Hit_len>465</Hit_len>
208 <Hit_hsps>
209 <Hsp>
210 <Hsp_num>1</Hsp_num>
211 <Hsp_bit-score>187.283</Hsp_bit-score>
212 <Hsp_score>476</Hsp_score>
213 <Hsp_evalue>1.84305e-52</Hsp_evalue>
214 <Hsp_query-from>824</Hsp_query-from>
215 <Hsp_query-to>1858</Hsp_query-to>
216 <Hsp_hit-from>121</Hsp_hit-from>
217 <Hsp_hit-to>464</Hsp_hit-to>
218 <Hsp_query-frame>-2</Hsp_query-frame>
219 <Hsp_hit-frame>0</Hsp_hit-frame>
220 <Hsp_identity>94</Hsp_identity>
221 <Hsp_positive>136</Hsp_positive>
222 <Hsp_gaps>19</Hsp_gaps>
223 <Hsp_align-len>354</Hsp_align-len>
224 <Hsp_qseq>VRKSRLVNWEEEHKNRVSPNLAEMPEGLVYERASQLFSRSISAGKRPR-KFD-WREYWQSRWQWSAAGSIHSQYSEDDKYIFKDIYLKNKFISILAMPDMNMDSWRER----DPELHAWSSTKYEWSKLRAIYGTDVTSYVLAHFAFYNCEDVLPSPFPVGKAANDEN--VRSRVRSVLEGRTQYCVDFEDFNSQHSVQSMKAVIDAYRDTFGHFLTQEQLAAVEWTRLSLDRVIVHDNQGLKMEYNAKGTLLSGWRLTTFMNSVLNYIYTQLIVPDVVQSQNSLHNGDDVLLGSNSLEDVLLAGKNAKKHNIRLQMSK-CAYGAIAEFLRVDHKRGSKGQYLSRAMATLVHSR</Hsp_qseq>
225 <Hsp_hseq>GRGVTNVDWEEEAKNRVDLAVVCRLVLLPMEELRAHIDAVLDELVVRRGLCDPIRLFVKNEPLWCVNGHPDHKLRE---GRLRLLSSVSLVDQLVRR--MLFEPQNNNEIAWWGSVPSKPSMKLEHGKSRAIYACDTRSYLAFEYLLAPVEKAWANKSVILNPGEGDISGFDWSVQDWKRGGVSLMLDYDDFNSQHSTESMRAVFERLR----RRLPDEPAEAADWLVCSMDSMYQLSD-GTLLAQRVPGTLKSGHRATTFINSVLNCAYAELAGAPWADVPTSIHMGDDVLEGLRTPADATSLLDKYARLGFKVNPSKQSVGHTIAEFLRVAFCSHEVRGYLARAIASLVSGN</Hsp_hseq>
226 <Hsp_midline> R V+WEEE KNRV + L E + R D R + ++ W G + E + + + ++ M + + + S K E K RAIY D SY+ + E + + + V+ G +D++DFNSQHS +SM+AV + R L E A +W S+D + + G + GTL SG R TTF+NSVLN Y +L S+H GDDVL G + D + ++ SK IAEFLRV YL+RA+A+LV </Hsp_midline>
227 </Hsp>
228 </Hit_hsps>
229 </Hit>
230 <Hit>
231 <Hit_num>2</Hit_num>
232 <Hit_id>gnl|CDD|279070</Hit_id>
233 <Hit_def>pfam00680, RdRP_1, RNA dependent RNA polymerase. </Hit_def>
234 <Hit_accession>279070</Hit_accession>
235 <Hit_len>475</Hit_len>
236 <Hit_hsps>
237 <Hsp>
238 <Hsp_num>1</Hsp_num>
239 <Hsp_bit-score>45.0546</Hsp_bit-score>
240 <Hsp_score>107</Hsp_score>
241 <Hsp_evalue>3.12197e-05</Hsp_evalue>
242 <Hsp_query-from>995</Hsp_query-from>
243 <Hsp_query-to>1873</Hsp_query-to>
244 <Hsp_hit-from>4</Hsp_hit-from>
245 <Hsp_hit-to>344</Hsp_hit-to>
246 <Hsp_query-frame>-2</Hsp_query-frame>
247 <Hsp_hit-frame>0</Hsp_hit-frame>
248 <Hsp_identity>62</Hsp_identity>
249 <Hsp_positive>102</Hsp_positive>
250 <Hsp_gaps>96</Hsp_gaps>
251 <Hsp_align-len>365</Hsp_align-len>
252 <Hsp_qseq>SKEQHVRKSRLVNWEEEHKNRVSP-NLA----EMPEGLVYERASQL-----FSRSISAGKRPRKFDWREYWQSRWQWSAAGSIHSQYSEDDKYIFKDIYLKNKFISILAMPDMNMDS----------WRERDPE-------------LHAWSST----------------------KYEWSKLRAIYGTDVTSYVLAHFAFYNCEDVLPSPFPVGKAANDENVRSRVRSVLEGRTQ-----YCVDFEDFNSQHSVQSMKAVIDAYRDTFGHFLTQEQLAAVEW--TRLSL-DRVIVHDNQGLKMEYNAKGTLLSGWRLTTFMNSVLNYIYTQ--LI-------VPDVVQSQNSLHNGDDVLLGSN</Hsp_qseq>
253 <Hsp_hseq>MTKTALVPS-VIEGYIDTVEDYEPAALGFKDPRLDAYLGLSRVAISKDSLKPYGQEEVLGVPREF---------LHDAAKGLT----SMLEGADLGDLSVSEAINGADGFDALNMDTSPGFPYILNGGKKRDLVKDEEADKVLLKAAYEALRLAEGGEGLPGVYTTCLKDELRPLEKVLKGKTRLFWGCPVEVNLVARAAFGPFNNKIYANGIKLGIAVGINPFSRDWERLAALIRKGSDVLDVDYSAFDSTLSPFVFDLVIDIRSEFCEDKLKLTRLALLELLSNPIHIFNGTIIKVEGGLP----------SGQPATSVINSINNNIYVLYALIKHTGESELDDLFETIRFFSYGDDNLVAVN</Hsp_hseq>
254 <Hsp_midline> + + S ++ + P L + L R + PR+F +A G S + D+ + +NMD+ ++RD A K K R +G V ++A AF + + + A N SR L + VD+ F+S S VID + L +LA +E + + + I+ GL SG T+ +NS+ N IY LI + D+ ++ GDD L+ N</Hsp_midline>
255 </Hsp>
256 </Hit_hsps>
257 </Hit>
258 </Iteration_hits>
259 <Iteration_stat>
260 <Statistics>
261 <Statistics_db-num>16305</Statistics_db-num>
262 <Statistics_db-len>2821655</Statistics_db-len>
263 <Statistics_hsp-len>93</Statistics_hsp-len>
264 <Statistics_eff-space>877154880</Statistics_eff-space>
265 <Statistics_kappa>0.041</Statistics_kappa>
266 <Statistics_lambda>0.267</Statistics_lambda>
267 <Statistics_entropy>0.14</Statistics_entropy>
268 </Statistics>
269 </Iteration_stat>
270 </Iteration>
271 <Iteration>
272 <Iteration_iter-num>5</Iteration_iter-num>
273 <Iteration_query-ID>Query_5</Iteration_query-ID>
274 <Iteration_query-def>ds2020-267_5</Iteration_query-def>
275 <Iteration_query-len>2029</Iteration_query-len>
276 <Iteration_hits>
277 <Hit>
278 <Hit_num>1</Hit_num>
279 <Hit_id>gnl|CDD|279070</Hit_id>
280 <Hit_def>pfam00680, RdRP_1, RNA dependent RNA polymerase. </Hit_def>
281 <Hit_accession>279070</Hit_accession>
282 <Hit_len>475</Hit_len>
283 <Hit_hsps>
284 <Hsp>
285 <Hsp_num>1</Hsp_num>
286 <Hsp_bit-score>46.5954</Hsp_bit-score>
287 <Hsp_score>111</Hsp_score>
288 <Hsp_evalue>8.86955e-06</Hsp_evalue>
289 <Hsp_query-from>840</Hsp_query-from>
290 <Hsp_query-to>1706</Hsp_query-to>
291 <Hsp_hit-from>166</Hsp_hit-from>
292 <Hsp_hit-to>437</Hsp_hit-to>
293 <Hsp_query-frame>3</Hsp_query-frame>
294 <Hsp_hit-frame>0</Hsp_hit-frame>
295 <Hsp_identity>55</Hsp_identity>
296 <Hsp_positive>99</Hsp_positive>
297 <Hsp_gaps>51</Hsp_gaps>
298 <Hsp_align-len>306</Hsp_align-len>
299 <Hsp_qseq>KDDPNKMRTIWGCSKPWIIADTMLWWEYVAYAKLQPGATPMLWSYETFTGGWLRLNHALFSSYIRHSYITLDWKRFDKKAYFCIIDKIFDGVETFLDFDNGYLPTKD-YPDTKSTWTQERSTRLKRLFDWTKENFYHAPIVLPNGHMYVRKFAGIPSGLFITQLIDSWYN-YTMLATILSAMGFDPRSCIIK-----VQGDDSIIRLSALIPPDAHDSFLTKVQELADYYFQSVVSVNKSEVRNELNGCEVLSYRHRHGLP----YRDEL---AMLAQLYHTKARNPSPEITMAQ---SIGFAYAS</Hsp_qseq>
300 <Hsp_hseq>KVLKGKTRLFWGCPVEVNLVARAAFGPFNNKIYANGIKLGIAVGINPFSRDWERL-AALIRKG--SDVLDVDYSAFDSTLSPFVFDLVIDIRSEF--CEDKLKLTRLALLELLSN-----------------------PIHIFNG-TIIKVEGGLPSGQPATSVINSINNNIYVLYALIKHTGESELDDLFETIRFFSYGDDNLVAVNPDVDSVGQKLK----EHLKDLG-LTPTRADKTSEFSPIKPIEEVVFLKRTFSRTEGGVRPRLDRKSIERQLYWIRAGNTSEEARGQQLENALGEAYHH</Hsp_hseq>
301 <Hsp_midline>K K R WGC + + + + F+ W RL AL + +D+ FD + D + D F ++ T+ + S PI + NG ++ G+PSG T +I+S N +L ++ G + + GDD+++ ++ + + L D + +K+ + + E + + R R L ++ QLY +A N S E Q ++G AY </Hsp_midline>
302 </Hsp>
303 </Hit_hsps>
304 </Hit>
305 </Iteration_hits>
306 <Iteration_stat>
307 <Statistics>
308 <Statistics_db-num>16305</Statistics_db-num>
309 <Statistics_db-len>2821655</Statistics_db-len>
310 <Statistics_hsp-len>92</Statistics_hsp-len>
311 <Statistics_eff-space>771811480</Statistics_eff-space>
312 <Statistics_kappa>0.0625983</Statistics_kappa>
313 <Statistics_lambda>0.267</Statistics_lambda>
314 <Statistics_entropy>0.14</Statistics_entropy>
315 </Statistics>
316 </Iteration_stat>
317 </Iteration>
318 <Iteration>
319 <Iteration_iter-num>6</Iteration_iter-num>
320 <Iteration_query-ID>Query_6</Iteration_query-ID>
321 <Iteration_query-def>ds2020-267_6</Iteration_query-def>
322 <Iteration_query-len>1860</Iteration_query-len>
323 <Iteration_hits>
324 <Hit>
325 <Hit_num>1</Hit_num>
326 <Hit_id>gnl|CDD|280316</Hit_id>
327 <Hit_def>pfam02123, RdRP_4, Viral RNA-directed RNA-polymerase. This family includes RNA-dependent RNA polymerase proteins (RdRPs) from Luteovirus, Totivirus and Rotavirus.</Hit_def>
328 <Hit_accession>280316</Hit_accession>
329 <Hit_len>465</Hit_len>
330 <Hit_hsps>
331 <Hsp>
332 <Hsp_num>1</Hsp_num>
333 <Hsp_bit-score>83.6639</Hsp_bit-score>
334 <Hsp_score>207</Hsp_score>
335 <Hsp_evalue>1.27376e-17</Hsp_evalue>
336 <Hsp_query-from>1147</Hsp_query-from>
337 <Hsp_query-to>1764</Hsp_query-to>
338 <Hsp_hit-from>288</Hsp_hit-from>
339 <Hsp_hit-to>464</Hsp_hit-to>
340 <Hsp_query-frame>-1</Hsp_query-frame>
341 <Hsp_hit-frame>0</Hsp_hit-frame>
342 <Hsp_identity>49</Hsp_identity>
343 <Hsp_positive>81</Hsp_positive>
344 <Hsp_gaps>31</Hsp_gaps>
345 <Hsp_align-len>207</Hsp_align-len>
346 <Hsp_qseq>RRVMEMSTQGVVACIDARNFNILHTQEVMASILESASVMLGSRLSEEQHKCLKWLSKAELNQKVLVKKGEVTEELLSAGRQEGWINQMMKGDGTMVEAATVTVGMFSGTRFTMLYNTILNRAYYKVAEELAGIKTLSLHSGDDVYSAFASYIDVYKMKKAMAFIGYTLQLAK-CFLQGVREFLRISHKNANTSQYLARSAATAIHGR</Hsp_qseq>
347 <Hsp_hseq>WSVQDWKRGGVSLMLDYDDFNSQHSTESMRAVFER----LRRRLPDEPAEAADWLVCS--------------------------MDSMYQLSDGTLLAQRVPGTLKSGHRATTFINSVLNCAYAELAGAPWADVPTSIHMGDDVLEGLRTPADATSLLDKYARLGFKVNPSKQSVGHTIAEFLRVAFCSHEVRGYLARAIASLVSGN</Hsp_hseq>
348 <Hsp_midline> V + GV +D +FN H+ E M ++ E L RL +E + WL + ++ M + + A V + SG R T N++LN AY ++A S+H GDDV + D + A +G+ + +K + EFLR++ + YLAR+ A+ + G </Hsp_midline>
349 </Hsp>
350 </Hit_hsps>
351 </Hit>
352 </Iteration_hits>
353 <Iteration_stat>
354 <Statistics>
355 <Statistics_db-num>16305</Statistics_db-num>
356 <Statistics_db-len>2821655</Statistics_db-len>
357 <Statistics_hsp-len>92</Statistics_hsp-len>
358 <Statistics_eff-space>697802160</Statistics_eff-space>
359 <Statistics_kappa>0.041</Statistics_kappa>
360 <Statistics_lambda>0.267</Statistics_lambda>
361 <Statistics_entropy>0.14</Statistics_entropy>
362 </Statistics>
363 </Iteration_stat>
364 </Iteration>
365 <Iteration>
197 <Iteration_iter-num>7</Iteration_iter-num> 366 <Iteration_iter-num>7</Iteration_iter-num>
198 <Iteration_query-ID>ds2020-267_374</Iteration_query-ID> 367 <Iteration_query-ID>ds2020-267_374</Iteration_query-ID>
199 <Iteration_query-def>No definition line</Iteration_query-def> 368 <Iteration_query-def>No definition line</Iteration_query-def>
200 <Iteration_query-len>242</Iteration_query-len> 369 <Iteration_query-len>242</Iteration_query-len>
201 <Iteration_hits> 370 <Iteration_hits>