Mercurial > repos > iuc > virhunter

comparison predict.py @ 2:ea2cccb9f73e draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/VirHunter commit c3685ed6a70b47012b62b95a2a3db062bd3b7475
author iuc
date Thu, 05 Jan 2023 14:27:54 +0000
parents 9b12bc1b1e2c
children 302332b914ef
comparison
equal deleted inserted replaced
1:9b12bc1b1e2c 2:ea2cccb9f73e
102 """ 102 """
103 df = ( 103 df = (
104 df.groupby(["id", "length", 'RF_decision'], sort=False).size().unstack(fill_value=0) 104 df.groupby(["id", "length", 'RF_decision'], sort=False).size().unstack(fill_value=0)
105 ) 105 )
106 df = df.reset_index() 106 df = df.reset_index()
107 df = df.reindex(['length', 'id', 'virus', 'plant', 'bacteria'], axis=1) 107 df = df.reindex(['length', 'id', 'virus', 'plant', 'bacteria'], axis=1).fillna(value=0)
108 conditions = [ 108 conditions = [
109 (df['virus'] > df['plant']) & (df['virus'] > df['bacteria']), 109 (df['virus'] > df['plant']) & (df['virus'] > df['bacteria']),
110 (df['plant'] > df['virus']) & (df['plant'] > df['bacteria']), 110 (df['plant'] > df['virus']) & (df['plant'] > df['bacteria']),
111 (df['bacteria'] >= df['plant']) & (df['bacteria'] >= df['virus']), 111 (df['bacteria'] >= df['plant']) & (df['bacteria'] >= df['virus']),
112 ] 112 ]