Mercurial > repos > iuc > virhunter
diff virhunter.xml @ 3:302332b914ef draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/VirHunter commit 58587e05f604590c70550e13fc51b7425e916ed4
| author | iuc |
|---|---|
| date | Sat, 14 Jan 2023 21:08:33 +0000 |
| parents | ea2cccb9f73e |
| children |
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--- a/virhunter.xml Thu Jan 05 14:27:54 2023 +0000 +++ b/virhunter.xml Sat Jan 14 21:08:33 2023 +0000 @@ -18,8 +18,8 @@ --out_path '${predicted_fragments.extra_files_path}' --return_viral True --limit $limit - && cp '${predicted_fragments.extra_files_path}'/predicted_fragments.csv predicted_fragments.csv - && cp '${predicted_fragments.extra_files_path}'/predicted.csv predicted.csv + && cp '${predicted_fragments.extra_files_path}'/predicted_fragments.tsv predicted_fragments.tsv + && cp '${predicted_fragments.extra_files_path}'/predicted.tsv predicted.tsv && cp '${predicted_fragments.extra_files_path}'/viral.fasta viral.fasta ]]></command> @@ -33,16 +33,16 @@ <param argument="--limit" type="integer" min="0" value="750" label="Minimum contig length" help="Do not predict contigs shorter than this value. Default: 750" /> </inputs> <outputs> - <data format="csv" name="predicted_fragments" from_work_dir="predicted_fragments.csv" label="${tool.name} on ${on_string}: predicted fragments"/> - <data format="csv" name="predicted" from_work_dir="predicted.csv" label="${tool.name} on ${on_string}: predicted "/> + <data format="tabular" name="predicted_fragments" from_work_dir="predicted_fragments.tsv" label="${tool.name} on ${on_string}: predicted fragments"/> + <data format="tabular" name="predicted" from_work_dir="predicted.tsv" label="${tool.name} on ${on_string}: predicted "/> <data format="fasta" name="viral" from_work_dir="viral.fasta" label="${tool.name} on ${on_string}: viral FASTA file" /> </outputs> <tests> <test> <param name="fasta_file" value="viruses.fasta"/> <param name="weights" value="test"/> - <output name="predicted_fragments" file="predicted_fragments.csv" ftype="csv" lines_diff="2"/> - <output name="predicted" file="predicted.csv" ftype="csv" lines_diff="2"/> + <output name="predicted_fragments" file="predicted_fragments.tsv" ftype="tabular" lines_diff="2"/> + <output name="predicted" file="predicted.tsv" ftype="tabular" lines_diff="2"/> <output name="viral" file="viral.fasta" ftype="fasta" lines_diff="2"/> </test> </tests>