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comparison test-data/HIV-output.fasta @ 0:0620360e441e draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/virulign/ commit b18f2f0794274e906cf75c8ed07e1a7eb1c9b7f8
author iuc
date Thu, 14 Aug 2025 17:13:56 +0000
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comparison
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-1:000000000000 0:0620360e441e
1 >HIV-HXB2-gag HIV-HXB2-gag
2 ATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGAGAATTAGATCGATGGGAAAAAATTCGG
3 TTAAGGCCAGGGGGAAAGAAAAAATATAAATTAAAACATATAGTATGGGCAAGCAGGGAG
4 CTAGAACGATTCGCAGTTAATCCTGGCCTGTTAGAAACATCAGAAGGCTGTAGACAAATA
5 CTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAGATCATTATATAAT
6 ACAGTAGCAACCCTCTATTGTGTGCATCAAAGGATAGAGATAAAAGACACCAAGGAAGCT
7 TTAGACAAGATAGAGGAAGAGCAAAACAAAAGTAAGAAAAAAGCACAGCAAGCAGCAGCT
8 GACACAGGACACAGCAATCAGGTCAGCCAAAATTACCCTATAGTGCAGAACATCCAGGGG
9 CAAATGGTACATCAGGCCATATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAA
10 GAGAAGGCTTTCAGCCCAGAAGTGATACCCATGTTTTCAGCATTATCAGAAGGAGCCACC
11 CCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCCATGCAAATG
12 TTAAAAGAGACCATCAATGAGGAAGCTGCAGAATGGGATAGAGTGCATCCAGTGCATGCA
13 GGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACT
14 AGTACCCTTCAGGAACAAATAGGATGGATGACAAATAATCCACCTATCCCAGTAGGAGAA
15 ATTTATAAAAGATGGATAATCCTGGGATTAAATAAAATAGTAAGAATGTATAGCCCTACC
16 AGCATTCTGGACATAAGACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTC
17 TATAAAACTCTAAGAGCCGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACC
18 TTGTTGGTCCAAAATGCGAACCCAGATTGTAAGACTATTTTAAAAGCATTGGGACCAGCG
19 GCTACACTAGAAGAAATGATGACAGCATGTCAGGGAGTAGGAGGACCCGGCCATAAGGCA
20 AGAGTTTTGGCTGAAGCAATGAGCCAAGTAACAAATTCAGCTACCATAATGATGCAGAGA
21 GGCAATTTTAGGAACCAAAGAAAGATTGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCAC
22 ACAGCCAGAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGA
23 CACCAAATGAAAGATTGTACTGAGAGACAGGCTAATTTTTTAGGGAAGATCTGGCCTTCC
24 TACAAGGGAAGGCCAGGGAATTTTCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAA
25 GAGAGCTTCAGGTCTGGGGTAGAGACAACAACTCCCCCTCAGAAGCAGGAGCCGATAGAC
26 AAGGAACTGTATCCTTTAACTTCCCTCAGGTCACTCTTTGGCAACGACCCCTCGTCACAA
27 TAA
28 >AY158535.1 HIV-1 strain 98ZA528 clone 6 from South Africa, complete genome
29 ATGGGTGCGAGAGCGTCAATATTAAGAGGGGGAAAATTAGATACATGGGAGAAGATTAGG
30 TTAAGGCCAGGGGGAAAGAAACAATATATGATAAAACATTTAGTATGGGCAAGCAGGGAG
31 CTGGAAAAATTTGCACTTAACCCTGGCCTTTTAGAGACATCAGAAGGCTGTAAACAACTA
32 ATGAGCCAGCTACAACCAGCTCTTCAGACAGGAACAGAGGAACTTAGGTCATTATACAAC
33 ACACTAGCAGTCCTCTATTGTGTACATGCAAAGATAGAGGTACGAGACACCAAGGAAGCC
34 TTAGACAAAATAGAGGAAGAACAAAAGAAAAGTCAGCAAAAAACACAGCAGGCGAAAGAG
35 GAT---------GACAGGAAGATCAGTCAAAATTATCCTATAGTACAGAATCTCCAAGGG
36 CAAATGGTACATCAGGCCATATCACCTAGAACCTTGAATGCATGGGTAAAAGTAGTAGAG
37 GAGAAGGCTTTTAGCCCAGAAGTAATACCCATGTTTACAGCATTATCAGAAGGAGCCACC
38 CCACAAGATTTAAACACCATGTTAAATACAGTGGGGGGACATCAAGCAGCCATGCAAATG
39 TTAAAAGATACCATCAATGAGGAGGCTGCAGAATGGGATAGAACACATCCAGTACATGCA
40 GGGCCTAATGCACCAGGCCAGTTAAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACT
41 AGTACCCTTCAGGAACAAATAGCATGGATGACAAATAACCCACCTATTCCAGTGGGAGAC
42 ATCTATAAAAGATGGATAATTCTGGGGTTAAATAAAATAGTAAGAATGTATAGCCCTGTC
43 AGCATTTTGGATATAAGACAAGGGCCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTC
44 TTTAAAACTTTAAGAGCTGAACAAGCTACACAAGATGTAAAAAATTGGATGACAGACACC
45 TTGTTGGTCCAAAATGCAAACCCAGATTGTAAGATCATTTTAAAAGGATTAGGACCAGGG
46 GCTACATTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCTGGCCACAAAGCA
47 AGAGTGTTGGCTGAGGCAATGAGCCAA---ACAAACAATATGAACATAATGATGCAGAGA
48 AGCAATTTTAAAGGCTCAAAAAGAATTGTTAAATGTTTTAACTGTGGCAAGGAAGGGCAC
49 ATAGCCAGAAATTGCAGGGCTCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGA
50 CACCAAATGAAAGACTGCACTGAAAGGCAGGCTAATTTTTTAGGGAAAATTTGGCCTTCC
51 CACAAGGGGAGGCCAGGGAATTTCCTTCAGAACAGACCAGAGCCAACAGCCCCACCAGAG
52 GAGAGCTTCAGGTTCGGG------GAGACAACCCCCGCTCCGAAGCAGGAGCTGAAAGAC
53 AGGGAA------ACCCTAACTTCCCTCAAATCACTCTTTGGCAGCGACCCCTTGTCTCAA
54 TAA
55 >DQ275656.1 HIV-1 isolate 03ZAPS103MB2 from South Africa gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds
56 ATGGGTGCGAGAGCGTCAATATTAAGAGGCGGAAAATTAGATGCATGGGAAAGAATTAGG
57 TTAAGGCCAGGGGGAAAGAAACATTATATGCTAAAACACCTAGTATGGGCAAGCAGGGAG
58 CTGGAAAGATTTGCACTTAACCCAGGCCTTTTAGAAACATCAGCAGGCTGTAAACAAATA
59 ATAAAGCAGCTACATCCAGCTCTTCAGATAGGAACAGAGGAACTTAAATCATTATACAAC
60 ACAGTAGCAGTTCTCTATTGTGTACATGAAAAGATAGAGGTACGAGACACCAAGGAAGCC
61 TTAGACAAGATAGAGGAAGAACAAAACAAAAGTCAGCAAAAAACACAGCAGGCAAAAGCG
62 GCTGACGGA---------AACGTCAGTCAAAATTATCCTGTAGTGCAGAATCTCCAAGGG
63 CAAATGGTACACCAGGCCATATCACCTAGAACTTTGAATGCATGGGTAAAAGTAATAGAG
64 GAGAAGGCTTTCAGCCCAGAAGTAATACCCATGTTCACAGCATTATCAGAAGGAGCCACC
65 CCCTCAGATTTAAACACCATGTTAAATACAGTGGGGGGACATCAAGCAGCCATGCAGATG
66 TTAAAAGATACCATCAATGAGGAGGCTGCAGAATGGGACAGAGTACATCCAGTACATGCA
67 GGGCCTGTTGCACCAGGTCAAATGAGGGAACCTAGGGGAAGTGACATAGCAGGAACTACT
68 AGTACCCTTCAGGAACAAATAGCATGGATGACAAGCAACCCACCTGTCCCAGTGGGAGAC
69 ATCTATAAAAGATGGATAATTCTGGGGTTAAATAAAATAGTAAGAATGTATAGCCCTGTC
70 AGCATTTTAGACATAAAACAGGGGCCAAAGGAACCCTTCAGGGATTATGTAGATCGGTCC
71 TTTAAGGTTTTAAGAGCTGAGCAAGCTACACAAGATGTAAAAAATTGGATGACAGACACC
72 TTGTTGGTCCAAAATGCGAACCCAGATTGTAAGACCATTTTAAAGGCATTAGGACCAGCA
73 GCTTCATTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCTAGCCACAAAGCA
74 AGAATATTGGCTGAGGCAATGAGCCAA---GCAAACAGC---AACATAATGATGCAGAGA
75 AGTAATTTTAAAGGACCTAGAAGAATTATTAAATGTTTCAACTGTGGCAAGGAGGGGCAC
76 ATAGCCAAAAATTGCAGGGCCCCTAGAAAGAAAGGCTGTTGGAAATGTGGAAGAGAAGGA
77 CACCAAATGAAAGACTGTTCTGAAAGGCGGGCTAATTTTTTAGGGAAAATTTGGCCTTCC
78 CTCAAGGGGAGGCCAGGGAATTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGCA
79 GAGAGCTTCAGG------TTCGAGGAAGTGACCCCCACTCCGAAGCAGGAGCCGAAAGAC
80 AGGGAA------CCCTTAACTTCCCTCAAATCACTCTTTGGCAGCGACCCCTTGTCTCAA
81 TAA
82 >EF589040.1 HIV-1 isolate 02KZYUZ300413 from Kazakhstan gag protein (gag) and pol protein (pol) genes, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds
83 ------GCGAGAGCGTCGGTATTAAGCGGGGGAAAATTAGATGCATGGGAAAAAATTCGG
84 TTAAGGCCAGGGGGAAAGAAAAAATATAGAATAAAACACCTAGTATGGGCAAGCAGGGAG
85 CTGGAAAGATTCGCGCTTAACCCTAGCCTTTTAGAAACATCAGAAGGATGTCAGCAAATA
86 CTGGAACAGTTACAACCAACTCTCAAGACAGGATCAGAAGAACTTAAATCATTATATAAT
87 ACAGTAGCAACCCTCTATTGTGTACATCAACGGATAGAAATAAAAGACACCAAGGAAGCT
88 TTAGATAAAATAGAGGAAATACAAAATAAGAGCAAGCAAAAGACCCAACAGGCAGCAACT
89 GGCACAGGAAGCAGCAGCAAGGTCAGTCAAAATTACCCCATAGTGCAAAATGCACAAGGG
90 CAAATGACACACCAGTCCATGTCACCTAGGACTTTGAATGCATGGGTGAAAGTAATAGAA
91 GAAAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCATTGTCAGAGGGAGCCACC
92 CCACAAGATTTAAACATGATGCTGAACATAGTGGGGGGACACCAGGCAGCTATGCAAATG
93 TTGAAAGATACCATCAATGAGGAAGCTGCTGAATGGGATAGGTTACATCCAGCACAGGCA
94 GGGCCTTTTCCACCAGGGCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACT
95 AGTACCCTTCAAGAACAAATAGGATGGATGACAAGCAACCCACCTATTCCAGTGGGAGAC
96 ATCTATAAAAGATGGATAATCCTAGGATTAAATAAAATAGTACGAATGTATAGCCCTGTT
97 AGCATTTTAGACATAAGACAAGGGCCAAAAGAACCCTTCAGAGACTATGTAGATAGGTTC
98 TTTAAAACTCTTAGAGCTGAGCAAGCTACACAGGATGTAAAGAACTGGATGACAGAAACC
99 CTGCTGGTCCAAAATGCAAATCCAGATTGTAAAACTATTTTAAGAGCATTGGGATCAGGG
100 GCTACATTAGAAGAAATGATGACAGCATGCCAGGGAGTGGGAGGACCCGGCCATAAAGCA
101 AGGGTTTTGGCCGAGGCAATGAGTCAAGTACAAAAT---GCAAACATAATGATGCAGAAA
102 AGTAATTTTAGGGGCACAAAAAGAATT---AAGTGTTTCAACTGTGGCAAAGAAGGACAC
103 CTAGCCAGAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGC
104 CATCAAATGAAAGACTGCACTGAGAGACAGGCTAATTTTTTAGGGAGAATTTGGCCTTCC
105 AGCAAAGGGAGGCCAGGAAATTTTCCTCAGAGCAGACCAGAACCATCAGCCCCACCAGCA
106 GAAAACTTT---GGGATGAGGGAAGAGATAACCCCCTCCCTGAAACAGGAACAGAAAGAC
107 AGGGAACAACGTCCTCCTTCATCCCTCAAATCACTCTTTGGCAACGACCCCTTGTCACAG
108 TAA
109 >JF320157.1 HIV-1 isolate 502-1478_wg5 from USA gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds
110 ATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGAAAATTGGATAAATGGGAAAAAATTAGG
111 TTAAGGCCAGGGGGAAAGAAAAGGTATAAATTAAAACATATAGTATGGGCAAGCAGGGAG
112 CTAGAACGATTCGCAGTCAATCCTGGCCTGTTAGAAACAGCAGAAGGCTGCAGACAAATA
113 CTGGGACAGTTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAAATCATTATATAAT
114 ACAGTAGCAACTCTCTATTGTGTTCATCAATACATAGAGGTAAAGGACACCAAGGAAGCT
115 TTAGATAAGATAGAGGAAGAGCAAAACAAAAGTAAGAAGAGGGCACAGGCAGCAGCAGCT
116 GACACAGGAAACAACAGCAATGTCAGCCAAAATTACCCCATAGTGCAGAATTCTCAGGGG
117 CAAATGGTACATCAGGCCATATCACCTAGAACTTTAAATGCATGGGTAAAAGTGATAGAA
118 GAGAAAGCTTTCAGCCCAGAAGTAATACCCATGTTTACAGCCTTATCAGAAGGAGCCACC
119 CCACACGATTTAAACACCATGCTAAATACAGTGGGGGGACATCAAGCAGCCATGCAAATG
120 TTAAAAGAAACCATCAATGATGAAGCCGCAGAATGGGATAGATTGCATCCAGTGCATGCA
121 GGACCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACCACT
122 AGTACCCTTCAGGAACAAATAGCATGGACAACAAATAACCCACCTATCCCAGTAGGAGAA
123 ATTTATAAAAGATGGATAATCCTGGGATTAAATAAAATAGTAAGAATGTATAGTCCTACC
124 AGCATTCTGGACATAAAACAAGGACCAAAGGAGCCCTTTAGAGATTATGTAGACCGGTTC
125 TATAAAACTCTAAGAGCCGAGCAAGCAACACAGGAGGTAAAAAATTGGATGACAGAAACC
126 TTGTTGGTCCAGAATGCAAACCCAGATTGTAAGACTATCTTAAGAGCATTGGGACCAGCA
127 GCTACACTAGAAGAAATGATGACAGCATGTCAAGGAGTAGGAGGACCCGGCCATAAGGCA
128 AGAGTTTTGGCTGAGGCAATGAGTCAAGTGACAAATGCAAATGCCATAATGATACAGAGA
129 GGCAATTTTAAGGGCCAAAGAAAGACTGTTAAATGTTTCAATTGTGGCAAAGAAGGGCAC
130 ATAGCCAGAAATTGCAGGGCCCCTAGAAAAAAGGGCTGTTGGAAATGTGGACAGGAAGGA
131 CACCAAATGAAGGATTGTAATGAGAGACAGGCTAATTTTTTA------------------
132 ---------------GGGAATTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCTCCAGAA
133 GAGAGCCTCAGGTTTGGGGAAGGGACAACACCTCCCTCTCAGAAGCAGGAGCCGATAGAC
134 AAGGAGATGTATCCTTTAGCTTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAA
135 TAA
136 >AY532635.1 HIV-1 isolate 02CM-DJO0131 from Cameroon, complete genome
137 ATGGGTGCGAGAGCGTCAGTGTTAACAGGGGGAAAATTAGATCAATGGGAAGCAATTTAT
138 TTGAGACCAGGGGGAAAGAAAAAATACAGAATGAAACATTTAGTATGGGCAAGCAGGGAG
139 CTGGAAAGATTCGCTTGTAACCCAGGTCTCATGGACACAGCGAGCGGCTGTGCCCAGTTA
140 CTAAACCAATTAGAACCAGCTCTCGCAACAGGGTCAGAAGGACTGCGCTCCTTATATAAC
141 GCCCTAGCAGTTCTTTATTGTGTCCATAGTAACATACAGGTACACAATACACAAGAGGCG
142 TTGGACAAGATAAAAAAGGAACGGCACAAGTCCGAGCCAAAAAACCCAGAAGCAGGGGCA
143 GCGGCAGCAGCTGATAACAATATCAGTAGGAATTATCCTCTAGTCCAGAATGCTCAAGGA
144 CAAATGATACATCAGCCGCTGACACCCAGAACTTTAAATGCTTGGGTAAAAGTGATAGAG
145 GAGAAGGCCTTTAATCCAGAAGTAATACCAATGTTTATGGCCTTGTCAGAAGGGGCAACA
146 CCCGCAGATCTAAATACTATGTTAAATACAGTAGGAGGACATCAGGCAGCTATGCAGATG
147 CTAAAGGAAGTCATCAATGAGGAAGCAGCAGAATGGGACAGGACGCATCCARTCCCTGYG
148 GGACCATTACCCCCAGGACAACTGAGAGAACCTAGAGGAAGTGATATAGCAGGGACAACT
149 AGTACTCTGMTGGAACAGGTGACCTGGATGACTTCTAATCCTCCTGTTCCAGTAGGAGAA
150 ATCTATAAAAAATGGATAGTTCTGGGGTTAAATAGAATTGTGAGAATGTATAGTCCTGTC
151 AGCATTCTAGAGATCAAACAAGGACCAAAAGAACCCTTTAGAGATTATGTAGACAGGTTC
152 TACAAAACTTTAAGAGCAGAGCAGGCATCACAGGATGTAAAGAATTGGATGACAGAAACA
153 CTCTTAGTACAAAATGCAAATCCAGATTGTAAACAGATACTAAAAGCATTAGGGCCAGCA
154 GCTACCTTAGAAGAAATGATGACGGCCTGTCAGGGAGTGGGGGGACCAGCGCATAAGGCA
155 AGAGTGCTAGCAGAGGCTATGTCACAGGTACAGACAGCAACTAGTGTCTTTGCACAAGGG
156 AGAAACTTTAAAGGCATAAGGAGAACCATTAGATGTTTCAATTGTGGCAAAGAGGGCCAT
157 TTGGCAAGAAACTGTAAGGCCCCTAGAAGAGGGGGCTGTTGGAAATGTGGGCAAGAAGGA
158 CATCAAATGAAAGATTGTAATGAAAGACAGGCTAATTTTTTAGGAAAGGGCTGGTCTCCC
159 TTCAAAGGGAGACCAGGCAACTTCCCCCAGACAAGGAAAGAGCCCACAGCCCCGCCACTA
160 GAGAATTATGGGTCTCAGGAGGAGAGCACACAGGGGAAGGAGAGGCAGGAGAACACAGAG
161 AACTCTCTATACCCCTTAACTTCCCTCAGATCACTCTTTGGCAACGACCTGTCATCACAG
162 TAA
163 >AB253691.1 Human immunodeficiency virus 1 proviral DNA, complete genome, clone: pJPDR0492AE62
164 ATGGGTGCGAGAGCGTCAGTATTAAGTGGGGGAAAATTAGATACATGGGAAAAAATTCGG
165 TTACGGCCAGGGGGGAAGAAAAAATATAGGATGAAACATTTAGTATGGGCAAGCAGAGAG
166 TTGGAAAGATTCGCACTTAACCCTGGCCTTTTAGAAACAGCAGAAGGATGTCAACAAATA
167 CTAGAACAGTTACAGACAACTCTCAAGACAGGATCAGAAGAACTTAAATCATTATTTAAT
168 ACAATAGCAACCCTCTGGTGCGTGCACCAAAGGATAGAGGTAAGGGACACCAAGGAAGCT
169 TTAGATAAAATAGAGGAAGTACAAAATAAGAGCCAGCAAAAGACACAGCAGGGAGCAGCT
170 GGCACAGGAAGCAGCAGCAAAGTCAGCCAAAATTACCCTATAGTGCAAAATGCACAAGGG
171 CAAATGGTACATCAGCCTTTATCACCTAGAACCTTGAACGCATGGGTGAAAGTAGTAGAA
172 GAAAAGGGTTTTAACCCAGAAGTAATACCCATGTTCACAGCATTATCAGAGGGAGCCACC
173 CCACAAGATTTAAATATGATGCTAAATATAGTGGGGGGACACCAGGCAGCAATGCAAATG
174 TTAAAAGAAACCATCAATGAGGAAGCTGCAGAATGGGATAGGGTACACCCAGTACATGCA
175 GGGCCTATTCCACCAGGCCAGATGAGGGAACCAAGGGGAAGTGACATAGCAGGATCTACT
176 AGTACCCTTCAAGAACAAATAGGATGGATGACAAGCAATCCTCCTATCCCAGTGGGAGAC
177 ATCTATAAAAGGTGGATAATCCTGGGATTAAATAAAATAGTAAGAATGTATAGCCCTGTT
178 AGCATTTTGGACATAAGACAAGGGCCAAAAGAACCCTTCAGAGACTATGTAGATAGGTTC
179 TATAAAACTCTCAGAGCGGAACAAGCTACACAGGAGGTAAAAAACTGGATGACAGAAACC
180 TTGCTAGTCCAAAATGCGAATCCAGACTGTAAGTCCATTTTAAAAGCATTAGGAACAGGA
181 GCTACATTAGAAGAAATGATGACAGCATGCCAGGGAGTGGGAGGACCTGGCCATAAAGCA
182 AGGGTTTTGGCTGAGGCAATGAGCCAAGTACAA---CATGCAAAGATAATGATGCAGAGA
183 GGCAATTTTAAGGGCCAGAGAAGCATT---AAGTGCTTCAACTGTGGCAGAGAAGGACAC
184 CTAGCCAGAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGA
185 CATCAAATGAAAGACTGCACTGAGAGACAGGCTAATTTTTTAGGGAAAATTTGGCCTTCC
186 AACAAGGGAAGGCCAGGGAATTTTCCTCAGAGCAGACCAGAGCCATCAGCCCCACCAGCA
187 GAAAGCTGG---GAGATGAGGGAGGAGACAACCTCCTTACTGAAGCAGGAGCAGAAAGAC
188 AAGGAACATCCTCCTTTAGCTTCCCTCAAATCACTCTTTGGCAACGACCCATTGTCACAG
189 TAA
190 >JN024567.1 HIV-1 isolate USPI38051EI7y05121pcWG2B6 from USA gag protein (gag) gene, complete cds; pol protein (pol) gene, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds
191 ATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGAGAATTAGATAGATGGGAAAAAATTCGG
192 TTAAGGCCAGGGGGAAAGAAAAAATATAGATTAAAACATATAGTATGGGCAAGCAGGGAA
193 CTAGAACGATTCGCAGTTAATCCTGGCCTGTTAGAAACATCAGATGGCTGTAGACAAATA
194 CTGGAACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAGATCTTTATATAAT
195 ACAATAGCAACCCTCTATTGTGTACATCAAGGAATAGAGATAAAAGACACCAAGGAAGCT
196 CTAGACAAAATAGAGGAAGAGCAGAACAAAAGTAAGAAAAAACAAGCAGCAGCAGCAGCT
197 GACACAGGAAACAGGGGACAGGTCAGTCAAAATTTCCCTATAGTGCAGAACCTACAGGGG
198 CAAATGGTACATCAACCCCTATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTGGAA
199 GAGAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTACAGCATTATCAGAAGGAGCCACC
200 CCACAAGATTTAAACACCATGTTAAACACGGTGGGGGGACATCAAGCAGCCATGCAAATG
201 TTAAAAGAGACCATCAATGAGGAGGCTGCAGAATGGGATAGATTGCATCCAGTGCATGCA
202 GGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACCACT
203 AGTAACCTTCAGGAACAAATAGGATGGATGACACATAATCCACCTATCCCAGTAGGAGAA
204 ATCTATAAAAGATGGATAATCCTGGGATTAAACAAAATAGTAAGAATGTATAGCCCTACC
205 AGCATTCTGGACATAAAGCAAGGACCAAAGGAACCCTTTAGAGATTATGTAGACCGGTTT
206 TATAAAACTCTGAGAGCCGAACAAGCTTCACAGGAAGTAAAAAATTGGATGACAGAAACC
207 TTGTTGGTCCAGAATGCGAACCCAGATTGTAAGACTATCTTAAAAGCATTAGGGCCAGGA
208 GCTACACTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGGGGACCTAGTCATAAAGCA
209 AGAGTTTTGGCAGAAGCAATGAGCCAAGTA---AATTCAGCTACCGTAATGATGCAGAGG
210 GGCAATATTAGGAACTAAAGAAAGGCTGCCAAGTGTTTCAATTGTGGCAAAGAAGGGCAC
211 ATAGCCAGAAATTGCAGAGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGA
212 CACCAAATGAAAGATTGTACTGAAAGACAGGCTAATTTTTTAGGGAAGATCTGGCCTTCC
213 CACAAGGGAAGGCCAGGAAATTTTCTTCAGAGCAGGCCAGAGCCAACAGCCCCACCAGAA
214 GAGAGCTTCAGGTTTGGGGAGGGGACAACAACCCCCCCTCAGAAGCAGGAGCAGATAGAC
215 AAGGACCTGTATCCTTTAGCTTCCCTCAAATCACTCTTTGGCAACGACCCGTCGTCACAA
216 TAA