# HG changeset patch # User iuc # Date 1540292246 14400 # Node ID 59ebf2c42c0e30a27475793ab50657a43ea308fe planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/volcanoplot commit 7cc1a05f2868f270bf5bdbbd4820ef6f69c9fc8d diff -r 000000000000 -r 59ebf2c42c0e static/images/volcano_plot.png Binary file static/images/volcano_plot.png has changed diff -r 000000000000 -r 59ebf2c42c0e test-data/input.tab --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/input.tab Tue Oct 23 06:57:26 2018 -0400 @@ -0,0 +1,16407 @@ +Gene log2FoldChange pvalue padj +DOK6 0.51 1.861e-08 0.0003053 +TBX5 -2.129 5.655e-08 0.0004191 +SLC32A1 0.9003 7.664e-08 0.0004191 +IFITM1 -1.687 3.735e-06 0.006809 +NUP93 0.3659 3.373e-06 0.006809 +EMILIN2 1.534 2.976e-06 0.006809 +TPX2 -0.9974 2.097e-06 0.006809 +LAMA2 -1.425 2.39e-06 0.006809 +CAV2 -1.052 3.213e-06 0.006809 +TNN -1.658 8.973e-06 0.01472 +POU3F4 1.181 1.062e-05 0.01584 +COL13A1 -1.647 1.394e-05 0.01592 +IFITM3 -1.61 1.202e-05 0.01592 +SHISA3 -1.477 1.31e-05 0.01592 +LOC285954 1.05 1.456e-05 0.01592 +VEPH1 1.137 2.211e-05 0.02267 +ARHGAP29 -1.526 3.675e-05 0.03547 +KIAA1755 -1.562 3.972e-05 0.0362 +LAMC3 -1.563 4.29e-05 0.03704 +ITM2A -1.398 4.972e-05 0.04078 +DTHD1 1.54 5.594e-05 0.04371 +RBMS1 -0.9139 6.688e-05 0.04988 +CEBPD -1.202 7.859e-05 0.05606 +DMBX1 -1.425 9.529e-05 0.06486 +PAPLN -1.253 9.883e-05 0.06486 +ADM -1.357 0.0001089 0.06872 +COL2A1 -1.187 0.0001424 0.07794 +HS3ST3A1 -1.004 0.0001388 0.07794 +DYSF -1.03 0.0001425 0.07794 +PI16 1.495 0.0001297 0.07794 +CDC42EP5 -1.355 0.0001581 0.08146 +SLC12A8 -0.9425 0.0001589 0.08146 +ZNF391 -1.024 0.0001913 0.09512 +GALNTL2 1.075 0.0002298 0.1109 +C4orf45 1.288 0.0002472 0.1159 +KIF18B -0.8849 0.0002551 0.1162 +KIF20A -0.9505 0.0002972 0.1318 +PDE1B 1.053 0.0003356 0.1449 +BCAN 1.117 0.0003698 0.1477 +APLNR -1.365 0.000378 0.1477 +CILP -1.11 0.0003582 0.1477 +TEC -1.373 0.0003701 0.1477 +KLF5 -0.8177 0.0004159 0.1578 +ACSS2 -0.5578 0.0004232 0.1578 +RAPGEF2 0.3371 0.0004513 0.1645 +C1orf51 -0.6451 0.0005237 0.1665 +IGF2-AS1 -1.235 0.0005835 0.1665 +RPLP0P2 -1.096 0.0005689 0.1665 +COTL1 -0.7376 0.0005886 0.1665 +MYO1D -0.8454 0.0005529 0.1665 +CIAO1 0.2695 0.000522 0.1665 +POU3F3 0.6857 0.000588 0.1665 +CFLAR -0.9694 0.0005598 0.1665 +BHLHE40 -1.127 0.0004785 0.1665 +PLSCR4 -1.317 0.0004978 0.1665 +HECW1 0.5135 0.0005373 0.1665 +KCNQ3 1.147 0.000483 0.1665 +TIMP1 -1.15 0.0005267 0.1665 +CAV1 -1.115 0.0006722 0.1869 +LTBP4 -0.8186 0.0006991 0.1912 +HDAC1 -0.4542 0.0007203 0.1937 +HSPG2 -1.218 0.0007963 0.1947 +CYR61 -1.102 0.0008071 0.1947 +MYOF -1.194 0.0007397 0.1947 +COL4A1 -1.252 0.0007866 0.1947 +NMB 0.8677 0.0007872 0.1947 +ICAM1 -1.144 0.0007795 0.1947 +NOTCH3 -0.7585 0.0007529 0.1947 +MPPED2 0.5135 0.0008344 0.1984 +COL9A1 -0.9755 0.0008905 0.2087 +ACSF2 -1.142 0.0009448 0.2183 +KTN1 -0.3119 0.0009652 0.2199 +ITPR1 -1.118 0.00102 0.226 +PRPS2 -0.722 0.00101 0.226 +FAM180B 1.249 0.001146 0.2399 +POU2F3 -1.273 0.001114 0.2399 +COL5A2 -1.262 0.001155 0.2399 +ZSWIM3 0.438 0.001143 0.2399 +CADM2 0.643 0.001102 0.2399 +ARHGEF17 -0.5462 0.001214 0.2453 +SSC5D -1.126 0.001229 0.2453 +NRN1 0.8605 0.001241 0.2453 +PLAT -1.103 0.001226 0.2453 +SFXN2 -0.8373 0.00126 0.2456 +FMNL2 -0.2466 0.001276 0.2456 +ADAMTS3 -0.6153 0.001288 0.2456 +ADAMTS19 -1.199 0.001348 0.2543 +SH3BP1 -0.9641 0.001367 0.2548 +LEFTY2 -1.225 0.001414 0.2578 +EHBP1 0.3191 0.001414 0.2578 +UAP1L1 -1.113 0.001454 0.2622 +RAB27A -1.073 0.001516 0.2702 +ZNF213 0.3028 0.001604 0.28 +TOMM34 -0.4213 0.001596 0.28 +PERP -0.914 0.001672 0.2888 +OSMR -1.226 0.001749 0.2988 +CDCA3 -0.7986 0.001911 0.3119 +GPR179 0.8394 0.001972 0.3119 +TMC6 -1.078 0.001977 0.3119 +STXBP5L 0.6711 0.001936 0.3119 +HSPA1L 0.8842 0.001851 0.3119 +PLIN2 -0.604 0.001866 0.3119 +GSN -1.117 0.001977 0.3119 +F8A1 0.9911 0.00191 0.3119 +SLC27A6 -1.196 0.001998 0.3121 +COL4A2 -1.013 0.002192 0.3157 +WFDC1 -1.162 0.002149 0.3157 +DSEL 0.6867 0.002194 0.3157 +DOCK6 -0.8158 0.002172 0.3157 +MAN2B1 -0.4688 0.002099 0.3157 +NFKBIZ -0.888 0.002132 0.3157 +OCIAD2 0.7605 0.002108 0.3157 +REST -0.5478 0.002073 0.3157 +ANXA5 -0.8639 0.002075 0.3157 +TRIM13 0.3688 0.002254 0.3216 +ANLN -0.7229 0.002306 0.3261 +AP1S3 -0.8107 0.002352 0.3271 +LOC100859930 0.9008 0.002343 0.3271 +STK17B -0.887 0.00238 0.3281 +BHLHB9 0.4738 0.002441 0.3337 +IL1R1 -1.185 0.00248 0.3362 +CSDA -0.7633 0.002833 0.35 +POSTN -1.176 0.002706 0.35 +HHIPL1 0.8127 0.002742 0.35 +APBA2 0.4314 0.002752 0.35 +CBLN1 1.066 0.002768 0.35 +ALPK2 -1.108 0.002789 0.35 +NFATC2 -1.108 0.002726 0.35 +CN5H6.4 0.7852 0.002792 0.35 +ABHD14B -1.03 0.002859 0.35 +COL8A1 -1.171 0.002841 0.35 +HCG11 -0.8357 0.002844 0.35 +RUNX2 -0.88 0.002632 0.35 +EPB41L2 -0.9145 0.002832 0.35 +COL11A1 -1.145 0.002903 0.3528 +PODN -1.155 0.003085 0.3722 +NET1 -1.015 0.00311 0.3724 +IL13RA1 -1.106 0.003139 0.3731 +RNF207 -0.7995 0.003239 0.3798 +TRPM2 1.05 0.003246 0.3798 +SDF2L1 -0.4649 0.003298 0.3798 +SLCO2A1 -1.094 0.003293 0.3798 +DACT2 -1.06 0.00331 0.3798 +DCXR -0.4101 0.003335 0.38 +BCAM -0.8227 0.003423 0.3873 +FAM46B -1.002 0.00347 0.39 +FOXL1 -1.136 0.003579 0.3965 +SMTN -0.7131 0.003625 0.3965 +SLC6A1 0.7104 0.003616 0.3965 +YY2 -0.5988 0.003612 0.3965 +DEPDC1 -0.755 0.003704 0.3999 +HEPACAM2 1.116 0.003727 0.3999 +WBP5 -0.8485 0.003729 0.3999 +SPSB1 -1.05 0.003878 0.4105 +KIF23 -0.7154 0.003953 0.4105 +C1QL1 -1.072 0.003907 0.4105 +CBLN2 1.072 0.003934 0.4105 +LOC100505806 -1.069 0.003912 0.4105 +POU3F1 0.7912 0.004163 0.4116 +RGS8 0.9341 0.0043 0.4116 +GAD2 0.7494 0.004273 0.4116 +PKP2 -0.9689 0.004316 0.4116 +KIAA0564 -0.4253 0.004323 0.4116 +PIF1 -0.9292 0.004484 0.4116 +OR1F1 0.8391 0.004052 0.4116 +RRN3 0.3764 0.00431 0.4116 +CORO1A 0.4844 0.004098 0.4116 +CRISPLD2 -1.115 0.004242 0.4116 +TOP2A -0.7962 0.004366 0.4116 +ANKRD12 0.3062 0.004161 0.4116 +DHDH -0.811 0.004357 0.4116 +ZNF274 0.3354 0.004118 0.4116 +DPP4 -1.127 0.004023 0.4116 +TMEM169 0.7379 0.004108 0.4116 +CMTM8 -0.7701 0.004417 0.4116 +LAMP3 -0.9384 0.004515 0.4116 +SYNJ2 -0.9266 0.004504 0.4116 +DPY19L2P3 1.061 0.00448 0.4116 +TSC22D4 -0.5131 0.00443 0.4116 +AR -0.5979 0.00436 0.4116 +LOC339862 -1.109 0.004578 0.415 +CCDC152 0.9749 0.004621 0.4165 +NQO2 -0.6663 0.004716 0.4228 +CMTM5 1.096 0.004868 0.4341 +SERPING1 -0.8202 0.004974 0.4411 +TLCD2 -0.9392 0.005095 0.4494 +ATXN7L3B 0.3532 0.005133 0.4503 +APOE -0.9273 0.005183 0.4523 +GPC3 -1.073 0.005233 0.4542 +IRF1 -0.8166 0.00527 0.455 +GNG2 0.3508 0.005368 0.4611 +EPHX1 -0.5381 0.005794 0.4656 +CLEC2D -0.8191 0.005714 0.4656 +PTPRB -1.079 0.005753 0.4656 +NFATC4 -0.93 0.005692 0.4656 +LGALS3 -0.9472 0.005809 0.4656 +OTX2 0.8839 0.005746 0.4656 +UACA -1.058 0.005562 0.4656 +HAPLN3 -0.9001 0.005753 0.4656 +MYO5B -0.982 0.005461 0.4656 +PVRL3 -0.4554 0.005817 0.4656 +PRDM6 -1.068 0.005688 0.4656 +PDLIM7 -0.7154 0.005623 0.4656 +TSPYL4 0.3561 0.005811 0.4656 +CHRM2 0.9253 0.005564 0.4656 +PMEL -1.007 0.005987 0.4666 +GLIPR1 -1.05 0.006001 0.4666 +NLRC5 -0.9957 0.005976 0.4666 +FAM117A -0.4496 0.005934 0.4666 +FAM83D -0.7423 0.006 0.4666 +C7 -1.072 0.005919 0.4666 +SERPINF1 -1.026 0.006158 0.4721 +PLEKHH2 -1.032 0.006134 0.4721 +GYPC -1.042 0.006102 0.4721 +LAMB2 -0.5626 0.006196 0.4728 +SYNPO2 -1.065 0.006232 0.4734 +SLCO4C1 0.9821 0.006278 0.4746 +TNFAIP6 -1.011 0.006348 0.4777 +FKBP10 -0.7909 0.006391 0.4788 +LAMC1 -0.9224 0.006516 0.4827 +FAM150B -1.066 0.006477 0.4827 +TM4SF1 -1.051 0.006532 0.4827 +PCK2 -0.9537 0.006608 0.4832 +ZNF732 -0.949 0.006608 0.4832 +SLC35D2 -0.8576 0.006626 0.4832 +NOTCH2NL -0.517 0.006761 0.4867 +KRT19 -1.027 0.006764 0.4867 +PCDHGB7 1.014 0.006713 0.4867 +LOC100128787 0.9828 0.006919 0.4872 +PLXDC2 -0.554 0.00689 0.4872 +SLFN11 -1.06 0.006835 0.4872 +NEDD4L 0.3903 0.006904 0.4872 +SPATA2 0.3181 0.006851 0.4872 +CDCP1 -1.047 0.007063 0.4931 +USP53 -0.4552 0.007063 0.4931 +TRAF5 -0.9501 0.007369 0.4935 +PHYHIPL 0.4773 0.007331 0.4935 +A2M -1.048 0.00719 0.4935 +C12orf34 0.596 0.007283 0.4935 +LOC255480 -0.9411 0.007153 0.4935 +LOC150622 0.9708 0.007286 0.4935 +LOC100130451 0.9622 0.007342 0.4935 +SNAI1 -1.023 0.00725 0.4935 +BCL2L13 0.1979 0.007251 0.4935 +DSP -0.9805 0.007197 0.4935 +CERS2 -0.484 0.007538 0.4946 +SEMA6C 0.5278 0.007425 0.4946 +LRRC8E -0.8766 0.007533 0.4946 +RRAS -0.8278 0.007486 0.4946 +MASP1 0.6165 0.007535 0.4946 +RHBDF1 -0.6514 0.00761 0.4974 +UBQLN2 0.2471 0.007667 0.4991 +DOCK1 -0.7425 0.007715 0.5003 +DSCAML1 0.6893 0.007823 0.5033 +ZNF197 0.417 0.0078 0.5033 +LRIG3 -0.9736 0.008134 0.5161 +CUX2 0.6015 0.008177 0.5161 +UGGT2 -0.5188 0.008106 0.5161 +HSDL1 0.2664 0.008179 0.5161 +RBPMS -0.7992 0.008079 0.5161 +CD164 -0.757 0.00828 0.5205 +L1TD1 -1.033 0.008321 0.5206 +PRDX6 -0.5123 0.008346 0.5206 +FAM46C -0.9537 0.008391 0.5215 +ADAM33 -0.9939 0.008549 0.5293 +TLK1 -0.2367 0.00876 0.5403 +KCNK2 0.6097 0.008794 0.5404 +POLR3A 0.2868 0.009062 0.5426 +GANAB -0.3036 0.009048 0.5426 +CPOX -0.3403 0.009023 0.5426 +MICA -0.859 0.008998 0.5426 +POU3F2 0.4784 0.008894 0.5426 +AUTS2 0.39 0.009006 0.5426 +SYPL1 -0.4891 0.008937 0.5426 +MSN -0.3958 0.009132 0.5448 +ZCCHC24 -0.9672 0.009169 0.545 +GSTO1 -0.4109 0.009215 0.5458 +XDH 0.954 0.00933 0.5486 +PABPC1L2B 0.8795 0.009309 0.5486 +POGK 0.2803 0.009736 0.5624 +EFEMP2 -0.9948 0.009655 0.5624 +MYADM -0.7661 0.009726 0.5624 +ORC4 0.3291 0.009609 0.5624 +INSM1 0.5511 0.009701 0.5624 +C14orf149 -0.5111 0.01024 0.5647 +MFGE8 -0.6672 0.01011 0.5647 +CEACAM1 -0.981 0.01007 0.5647 +PLEKHA4 -0.8802 0.01021 0.5647 +MERTK -0.7662 0.009946 0.5647 +MARCH4 0.6728 0.0103 0.5647 +GBX2 0.8828 0.01022 0.5647 +SDC4 -0.6983 0.009882 0.5647 +ITGA9 -0.944 0.01008 0.5647 +SCN5A -0.9351 0.01019 0.5647 +MFI2 -0.8345 0.01026 0.5647 +RAB11FIP1 -0.7027 0.01033 0.5647 +TPD52 -0.7816 0.01023 0.5647 +KIAA2022 0.5636 0.01014 0.5647 +TCEAL6 0.8956 0.01016 0.5647 +MORC4 -0.9271 0.0103 0.5647 +POC1B -0.3673 0.01042 0.5659 +MRC2 -0.6332 0.01039 0.5659 +KCTD6 -0.3616 0.01053 0.57 +MEX3A 0.3088 0.01065 0.5708 +ACTN1 -0.7487 0.01061 0.5708 +TICAM1 -0.8589 0.01061 0.5708 +NPC2 -0.6069 0.01078 0.5721 +COL6A6 -0.969 0.01076 0.5721 +ZC3HAV1 -0.6569 0.01073 0.5721 +OAF -0.7698 0.01096 0.5782 +RNASE4 -0.9059 0.01096 0.5782 +CYBASC3 -0.4846 0.011 0.5784 +CSRNP1 -0.5808 0.01106 0.5795 +HLA-B -0.868 0.01116 0.5831 +ZNF689 0.2551 0.01125 0.5858 +SP9 0.9371 0.01128 0.5858 +WASF2 -0.6745 0.0114 0.5886 +SLFN12 -0.9886 0.01141 0.5886 +FLNA -0.614 0.01146 0.5896 +FREM2 -0.9473 0.01154 0.5914 +PDIA3P -0.3457 0.01185 0.5983 +GAS2L2 0.9302 0.01185 0.5983 +FERMT1 -0.9868 0.01187 0.5983 +SEC14L6 -0.9848 0.01193 0.5983 +CSPG5 0.6937 0.01186 0.5983 +C7orf41 0.3768 0.0119 0.5983 +MYBL1 -0.5962 0.01188 0.5983 +HJURP -0.8059 0.01202 0.6014 +SH3BP5L 0.2129 0.01241 0.6059 +DDN 0.7147 0.01244 0.6059 +RAB35 0.2403 0.0124 0.6059 +RBPMS2 -0.6679 0.01232 0.6059 +MYLK3 0.8447 0.01234 0.6059 +ZFYVE20 0.2118 0.01226 0.6059 +ACSL6 0.6116 0.01224 0.6059 +PCDHGB1 -0.8347 0.01224 0.6059 +SYNPO -0.9788 0.01241 0.6059 +ARHGAP17 -0.3736 0.01264 0.6065 +ETFB 0.505 0.01264 0.6065 +CRYBA4 -0.9657 0.01264 0.6065 +F2RL2 -0.9768 0.01251 0.6065 +STOM -0.743 0.01264 0.6065 +C15orf59 0.6647 0.01277 0.6072 +NCAN 0.5804 0.01274 0.6072 +GPC4 -0.7703 0.01277 0.6072 +DES -0.9714 0.01286 0.6096 +LEPREL2 -0.7969 0.01293 0.6112 +GRIN2A 0.6614 0.01302 0.6122 +FAM84B 0.6649 0.01301 0.6122 +CCND1 -0.5753 0.01313 0.6154 +SEPN1 -0.3657 0.01325 0.6177 +CGN -0.7533 0.01333 0.6177 +BAG5 0.2349 0.01328 0.6177 +WWC2 -0.4373 0.01333 0.6177 +ANO6 -0.5992 0.01349 0.6233 +FZD4 -0.8521 0.01357 0.6255 +DIAPH3 -0.7778 0.01367 0.6284 +RUNX1 -0.9599 0.01374 0.6298 +NTS 0.8462 0.01385 0.631 +TBC1D8B -0.9647 0.01381 0.631 +GP5 -0.9553 0.01392 0.6324 +ZNF547 0.5118 0.01398 0.6336 +B2M -0.7496 0.01412 0.6364 +GPANK1 0.3544 0.01412 0.6364 +MYCL1 0.564 0.01419 0.6377 +C15orf42 -0.7478 0.01427 0.6397 +PTP4A3 -0.6072 0.01435 0.6417 +TGFB1I1 -0.8773 0.01443 0.6434 +PTGDR2 -0.9554 0.0147 0.6467 +RARG -0.9358 0.01459 0.6467 +RAB34 -0.8674 0.01459 0.6467 +DSC2 -0.6871 0.0147 0.6467 +FZD5 -0.654 0.01478 0.6467 +KLHL18 0.249 0.01466 0.6467 +PCDHGB5 -0.956 0.01477 0.6467 +EFNA1 -0.7949 0.01488 0.6476 +KIAA0087 0.9528 0.01488 0.6476 +AURKA -0.652 0.01506 0.6535 +GAL3ST3 0.4134 0.01511 0.654 +WNT7A 0.7548 0.01515 0.6543 +C10orf105 0.8882 0.01528 0.6553 +TUBA1C -0.6215 0.01531 0.6553 +ADAMTS9 -0.8947 0.01534 0.6553 +PNMA2 0.4278 0.01524 0.6553 +MAN1C1 -0.5596 0.01579 0.6597 +CDC20 -0.7767 0.01562 0.6597 +PACSIN3 -0.8907 0.01553 0.6597 +PTHLH -0.9265 0.01572 0.6597 +DAZL -0.9135 0.01572 0.6597 +SRA1 0.3041 0.01559 0.6597 +ARPC1B -0.6737 0.0158 0.6597 +IMMP2L -0.4426 0.01559 0.6597 +ROR2 -0.9148 0.01578 0.6597 +PIEZO1 -0.7733 0.0159 0.6621 +SOCS3 -0.9404 0.01601 0.6634 +LOC150568 0.8026 0.01601 0.6634 +RASL12 -0.8837 0.01609 0.665 +SATL1 0.8447 0.01618 0.6671 +C1orf27 -0.3158 0.01624 0.6679 +TMEM198 0.4547 0.01647 0.6739 +MYOT -0.928 0.01645 0.6739 +PLAU -0.8276 0.01655 0.6749 +GPC6 -0.5345 0.01662 0.6749 +COPZ2 -0.9194 0.01661 0.6749 +MTHFR 0.2998 0.01729 0.6753 +PARD3 -0.3704 0.01726 0.6753 +PDIA3 -0.3509 0.01708 0.6753 +TPM1 -0.7177 0.01711 0.6753 +PRC1 -0.5474 0.01718 0.6753 +PLK1 -0.6854 0.01672 0.6753 +PIEZO2 -0.8503 0.01699 0.6753 +ZNF90 -0.7327 0.0169 0.6753 +GALP 0.8155 0.01693 0.6753 +LOC440905 -0.8935 0.01671 0.6753 +RFTN1 -0.8999 0.01677 0.6753 +TMEM196 0.7006 0.01701 0.6753 +NOD1 -0.5152 0.01707 0.6753 +GLI3 -0.8242 0.01696 0.6753 +WBSCR27 -0.9343 0.01718 0.6753 +C7orf34 0.9318 0.01721 0.6753 +FRRS1 -0.8998 0.01774 0.676 +FAM19A3 -0.8923 0.01788 0.676 +CNIH3 -0.4817 0.01784 0.676 +MDK -0.7156 0.01749 0.676 +GXYLT1 -0.6944 0.01783 0.676 +CTDSP2 -0.5123 0.01765 0.676 +SIX4 -0.8657 0.01784 0.676 +SLCO3A1 0.4415 0.01784 0.676 +PTBP1 -0.4376 0.0178 0.676 +ZNF324 0.3139 0.01754 0.676 +COLEC11 -0.9194 0.01776 0.676 +APOBEC3B -0.9292 0.01771 0.676 +MAGEF1 0.3826 0.01768 0.676 +SHROOM2 0.5668 0.01763 0.676 +KIAA1217 -0.7442 0.01871 0.69 +ST8SIA1 0.3806 0.01869 0.69 +LOC338758 0.6997 0.01834 0.69 +LOC283731 -0.4064 0.01872 0.69 +LYSMD4 0.4181 0.01859 0.69 +CYP1B1 -0.9248 0.01834 0.69 +PDGFRB -0.9184 0.01853 0.69 +FKBP5 -0.7347 0.01841 0.69 +AGBL3 0.5843 0.01861 0.69 +MNX1 0.921 0.01864 0.69 +PHKA2 -0.4551 0.01855 0.69 +CCBL2 -0.3365 0.01892 0.6925 +CLIC5 -0.9123 0.01883 0.6925 +WDR67 -0.3832 0.01887 0.6925 +SLC38A5 -0.7194 0.01895 0.6925 +KLF4 -0.8767 0.01907 0.6951 +HSD17B11 -0.6032 0.0192 0.6985 +SLC2A3 -0.5111 0.0193 0.7005 +CSDAP1 -0.7114 0.01946 0.7046 +SBNO2 -0.3452 0.01955 0.7064 +LRRC4C 0.5704 0.01962 0.7074 +ATL3 -0.5278 0.01975 0.7074 +C1S -0.9056 0.01966 0.7074 +PLAUR -0.8162 0.01974 0.7074 +LOC256021 0.6774 0.01988 0.709 +EID2B 0.4332 0.01987 0.709 +MTA3 -0.4227 0.02009 0.7151 +BSG -0.2869 0.02023 0.7167 +LAMP2 -0.2974 0.02022 0.7167 +ATHL1 -0.9069 0.02033 0.7179 +AHNAK -0.7987 0.02044 0.7179 +IGFBP5 -0.9055 0.02035 0.7179 +MBOAT1 -0.7067 0.02044 0.7179 +EGFR -0.6912 0.02048 0.7179 +FRAT1 0.4904 0.02073 0.7201 +TBX10 -0.9015 0.02084 0.7201 +KCNA6 0.4245 0.02068 0.7201 +MATN3 -0.8883 0.02079 0.7201 +LTBP1 -0.8212 0.02081 0.7201 +SCARF2 -0.7426 0.02064 0.7201 +BAI3 0.3512 0.02085 0.7201 +LOC654433 0.828 0.02096 0.7226 +GTSE1 -0.5797 0.02106 0.7229 +SCRG1 -0.9048 0.02106 0.7229 +AHCY -0.5073 0.02111 0.7231 +LRRTM3 0.609 0.02122 0.7239 +MYO1C -0.7078 0.02121 0.7239 +AKR1E2 0.7441 0.02134 0.7264 +PCDHGB4 -0.8844 0.02142 0.7277 +P2RX4 -0.3807 0.02159 0.7309 +LINC00574 0.7267 0.02161 0.7309 +BPI -0.8613 0.02171 0.7313 +ATP2B2 0.751 0.02167 0.7313 +CDCA2 -0.6352 0.0218 0.7328 +FGF8 -0.8835 0.02191 0.7338 +FAM198A -0.8977 0.02192 0.7338 +FMO2 -0.8029 0.0222 0.7401 +LOC642852 0.5471 0.02215 0.7401 +IGF2R -0.5322 0.02227 0.741 +TIGD3 0.6643 0.02236 0.7426 +GFPT2 -0.6006 0.02241 0.7429 +BCAS2 0.3073 0.02266 0.7431 +IQGAP3 -0.7145 0.02274 0.7431 +ZDHHC20 -0.3828 0.02266 0.7431 +ARID4A 0.2039 0.02278 0.7431 +SPHK1 -0.8455 0.02253 0.7431 +FAM110C -0.7952 0.02259 0.7431 +PXDN -0.7352 0.02275 0.7431 +THSD7B -0.5467 0.02268 0.7431 +PRUNE 0.2438 0.02292 0.7459 +ECE1 -0.7102 0.02311 0.7477 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0.2381 0.03314 0.809 +HEXB -0.4081 0.03323 0.809 +PPP1R3G -0.8344 0.03314 0.809 +MDFIC -0.6575 0.03324 0.809 +RXFP3 0.832 0.03336 0.8098 +PTTG3P -0.6051 0.03333 0.8098 +C1orf133 -0.7152 0.03375 0.8176 +TP53I13 -0.422 0.03379 0.8176 +SLC44A3 -0.7081 0.03438 0.8264 +C1orf115 -0.6315 0.03446 0.8264 +ANO4 -0.7486 0.03437 0.8264 +FNIP2 0.2913 0.03444 0.8264 +CRHBP -0.8231 0.03437 0.8264 +KIAA0368 -0.3228 0.0344 0.8264 +PLCE1 -0.7467 0.03491 0.8277 +PARPBP -0.5436 0.0348 0.8277 +FRMD6 -0.7527 0.03488 0.8277 +LIN7B 0.5171 0.03464 0.8277 +COL4A3BP -0.5851 0.03462 0.8277 +SCML4 0.7487 0.03473 0.8277 +ZNF815 0.3814 0.03489 0.8277 +DIRAS2 0.4271 0.03474 0.8277 +SULT1A1 -0.7929 0.03504 0.8292 +ADAMTS9-AS2 -0.7074 0.03508 0.8292 +CHTOP 0.2474 0.03521 0.8311 +DKK2 -0.8042 0.03534 0.8331 +HIST1H1D -0.8219 0.03541 0.8335 +CDK1 -0.5524 0.03609 0.8345 +SHISA2 -0.8216 0.03606 0.8345 +GJD2 0.6358 0.03608 0.8345 +CCNB2 -0.6054 0.0358 0.8345 +OMG 0.805 0.03565 0.8345 +MYL4 -0.7755 0.03625 0.8345 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-0.7039 0.06592 0.9251 +TSTD2 0.2954 0.06597 0.9251 +PTGES -0.7016 0.06267 0.9251 +FIBCD1 -0.6829 0.06516 0.9251 +STARD8 -0.7074 0.06244 0.9251 +KLHL4 -0.6903 0.0657 0.9251 +SH2D1A -0.6782 0.06569 0.9251 +HLX -0.6728 0.06837 0.927 +FOSB -0.6318 0.06832 0.927 +AKR1C3 -0.7137 0.06854 0.9278 +NFE2L2 -0.3512 0.06853 0.9278 +TRIP10 -0.5324 0.06872 0.9279 +ZNF14 0.3806 0.06869 0.9279 +DAB2 -0.5142 0.06862 0.9279 +CCNE1 -0.4662 0.06905 0.9309 +CRTAP -0.5294 0.06906 0.9309 +MYBPHL -0.6574 0.06967 0.9317 +RAB13 -0.5093 0.07021 0.9317 +IFITM2 -0.7098 0.06986 0.9317 +WEE1 -0.349 0.07071 0.9317 +LIN7C 0.3113 0.07001 0.9317 +NEAT1 -0.5604 0.06935 0.9317 +PRICKLE1 -0.6021 0.06958 0.9317 +TNFRSF12A -0.525 0.07083 0.9317 +ROGDI 0.3456 0.06977 0.9317 +CLEC16A 0.197 0.06923 0.9317 +TRADD -0.6894 0.0708 0.9317 +ATXN7L3 0.2479 0.07036 0.9317 +COIL 0.2361 0.06995 0.9317 +SPAST 0.3323 0.07065 0.9317 +RQCD1 0.2386 0.07059 0.9317 +HDLBP -0.3856 0.07093 0.9317 +ZNF502 0.7101 0.06932 0.9317 +LRRC58 -0.3642 0.07076 0.9317 +C4orf48 0.2925 0.07013 0.9317 +HMX1 -0.702 0.07093 0.9317 +SLC39A8 -0.3564 0.06976 0.9317 +PARP8 0.26 0.07093 0.9317 +AGXT2L2 -0.4154 0.07086 0.9317 +HIST1H4K -0.6587 0.07053 0.9317 +MDFI -0.4686 0.0692 0.9317 +TFEB -0.5835 0.07031 0.9317 +SOBP 0.2902 0.0707 0.9317 +EPM2A 0.3081 0.0706 0.9317 +RASEF -0.7099 0.07028 0.9317 +TOR2A 0.1958 0.07037 0.9317 +EFNB1 -0.4579 0.07022 0.9317 +IRS4 -0.6417 0.07016 0.9317 +FMNL1 0.5174 0.07107 0.9322 +CABLES2 0.1954 0.07108 0.9322 +PALMD -0.7062 0.07154 0.933 +ARHGAP30 0.4733 0.07142 0.933 +SLC6A12 -0.6354 0.0716 0.933 +FBXL8 -0.669 0.0716 0.933 +MPP4 -0.6609 0.07149 0.933 +FAM169A 0.2892 0.07155 0.933 +POPDC3 -0.6543 0.07148 0.933 +PRKDC -0.3408 0.07144 0.933 +MTCP1NB -0.3672 0.07166 0.9331 +KLHL35 0.547 0.07195 0.9361 +LOC388630 -0.6851 0.07216 0.9373 +TERF2 0.2403 0.07216 0.9373 +PDIK1L 0.3225 0.07438 0.9393 +CDKN2C -0.5881 0.07417 0.9393 +STAM 0.2146 0.07258 0.9393 +CEP55 -0.5626 0.07374 0.9393 +OAT -0.3282 0.07472 0.9393 +DPYSL4 0.3403 0.07368 0.9393 +INCENP -0.4533 0.07294 0.9393 +FLJ39051 0.4429 0.07465 0.9393 +TNFRSF1A -0.5017 0.07441 0.9393 +EMP1 -0.6983 0.07371 0.9393 +LRRK2 -0.638 0.07436 0.9393 +HMGA2 -0.6418 0.07437 0.9393 +PAWR -0.4633 0.07481 0.9393 +KDELC1 -0.4797 0.07463 0.9393 +STOML1 0.44 0.073 0.9393 +CPLX3 0.5793 0.07442 0.9393 +IQGAP1 -0.5202 0.07443 0.9393 +UNC45A -0.399 0.07369 0.9393 +QPRT -0.459 0.07395 0.9393 +FHOD1 -0.5817 0.07342 0.9393 +PMFBP1 -0.6728 0.07513 0.9393 +VPS53 0.2412 0.07388 0.9393 +GSG2 -0.5565 0.07526 0.9393 +DNAH2 0.5147 0.0737 0.9393 +MRM1 0.4208 0.07515 0.9393 +MPP2 0.354 0.07332 0.9393 +ITGB4 -0.6953 0.07405 0.9393 +CCDC68 -0.696 0.07529 0.9393 +SALL3 0.49 0.07403 0.9393 +TMC4 -0.5552 0.0751 0.9393 +ZNF329 0.2676 0.07305 0.9393 +ZNF324B 0.4072 0.07329 0.9393 +MAT2A 0.3537 0.0727 0.9393 +RND3 0.4659 0.07447 0.9393 +IL5RA 0.6958 0.07526 0.9393 +TUSC2 0.3129 0.07499 0.9393 +TACC3 -0.4554 0.07503 0.9393 +RGS12 0.2794 0.07467 0.9393 +KLHL8 0.2803 0.07494 0.9393 +CXXC4 0.3722 0.07323 0.9393 +RAB33B -0.3195 0.07345 0.9393 +LRP2BP 0.5095 0.0735 0.9393 +RIOK1 0.2755 0.07471 0.9393 +GUSB -0.289 0.07272 0.9393 +WNT16 -0.6902 0.07499 0.9393 +MTMR9 0.4022 0.07321 0.9393 +RB1CC1 0.1851 0.07324 0.9393 +LOC100130301 -0.6884 0.07526 0.9393 +ZHX2 -0.1906 0.07262 0.9393 +C8orf31 0.662 0.07311 0.9393 +PTPLAD2 -0.6807 0.07516 0.9393 +ANGPTL2 -0.6812 0.0727 0.9393 +XKR9 0.6838 0.07538 0.9397 +NPM3 -0.43 0.07558 0.9414 +NGF -0.6824 0.07589 0.9417 +WDR37 0.2218 0.076 0.9417 +NPFFR1 0.6156 0.07579 0.9417 +GIPC3 -0.696 0.07581 0.9417 +ERBB4 0.5386 0.07567 0.9417 +GHR -0.6939 0.07599 0.9417 +VWDE -0.6838 0.07595 0.9417 +RPS4X -0.5797 0.0761 0.9423 +CDK2AP2 -0.3551 0.07631 0.9432 +LOC146336 0.693 0.07658 0.9432 +UBE2C -0.6278 0.07624 0.9432 +C22orf39 0.2448 0.07654 0.9432 +MFSD7 -0.6817 0.07645 0.9432 +CANX -0.2312 0.07664 0.9432 +VIPR2 0.6908 0.07663 0.9432 +PPP1R3B -0.5682 0.07643 0.9432 +TMEM229B 0.5479 0.0767 0.9433 +PCDH17 0.2916 0.07683 0.9434 +HOXA10 -0.6931 0.0768 0.9434 +SYT12 0.5719 0.077 0.9434 +FLJ44054 -0.6519 0.07698 0.9434 +BASP1 0.4201 0.07695 0.9434 +NCAPH2 0.2371 0.07719 0.9445 +PLA1A -0.5791 0.07721 0.9445 +EGFLAM -0.6643 0.07726 0.9445 +CD151 -0.3897 0.0774 0.9449 +STX11 -0.677 0.07738 0.9449 +APRT -0.3698 0.07756 0.9456 +PTPN2 -0.342 0.07763 0.9456 +PRRT4 0.5432 0.07763 0.9456 +ARRDC2 -0.5913 0.0778 0.9469 +POLD4 -0.613 0.07788 0.9471 +LDLRAP1 -0.6823 0.07828 0.9475 +SYDE2 -0.558 0.07807 0.9475 +TP53BP2 -0.3194 0.07848 0.9475 +ADAM12 -0.5572 0.07815 0.9475 +GAL3ST2 0.6873 0.07821 0.9475 +CTNND2 0.2648 0.07819 0.9475 +TSPAN13 0.4076 0.0783 0.9475 +RPS2P32 0.6489 0.0784 0.9475 +SLC26A7 -0.6902 0.07843 0.9475 +C9orf7 0.2083 0.07848 0.9475 +CDCA8 -0.5135 0.0788 0.9479 +MKNK1 -0.2483 0.07956 0.9479 +TOMM40L 0.3821 0.0791 0.9479 +PTGS2 -0.6878 0.07897 0.9479 +DNAJC1 -0.4755 0.07904 0.9479 +TLL2 0.5684 0.07932 0.9479 +PSD 0.5206 0.07953 0.9479 +LIMA1 -0.4947 0.07919 0.9479 +RBMS2 -0.4759 0.07932 0.9479 +CKAP4 -0.3698 0.07866 0.9479 +EEF1DP3 0.6545 0.07897 0.9479 +TAX1BP3 -0.4054 0.07874 0.9479 +LOC653653 -0.4477 0.0791 0.9479 +ZNF512 0.2908 0.07935 0.9479 +SNHG11 0.2322 0.07955 0.9479 +CDH22 0.6411 0.07954 0.9479 +PTK7 -0.5221 0.07951 0.9479 +ZP3 -0.6679 0.07931 0.9479 +TMEM53 0.3107 0.08059 0.9479 +LRRC7 0.3219 0.08033 0.9479 +GSTM2 -0.5028 0.08061 0.9479 +CASP7 -0.4341 0.08068 0.9479 +PPFIBP2 -0.6376 0.08024 0.9479 +THAP2 0.2884 0.07976 0.9479 +HSP90AB4P -0.6784 0.08068 0.9479 +DET1 0.2051 0.08049 0.9479 +CYLD 0.319 0.08012 0.9479 +BCL3 -0.6233 0.0806 0.9479 +VWC2L 0.6372 0.07974 0.9479 +RNF25 0.1676 0.08019 0.9479 +CNTN4 0.504 0.07976 0.9479 +CISH -0.5241 0.08075 0.9479 +HADH -0.4319 0.08056 0.9479 +PCDHB11 0.4955 0.07996 0.9479 +GSR -0.1539 0.08022 0.9479 +GAS1 -0.6786 0.08036 0.9479 +RALGPS1 0.3386 0.08055 0.9479 +ASS1 -0.5933 0.07979 0.9479 +MAGT1 -0.483 0.08078 0.9479 +FOXRED1 0.2663 0.08087 0.9484 +APOBEC3F -0.6398 0.08099 0.9486 +PNMA6C 0.6833 0.08101 0.9486 +NYNRIN -0.5606 0.08159 0.9534 +PAFAH1B1 0.2687 0.08149 0.9534 +HLA-DPB1 -0.6257 0.08158 0.9534 +ACADL -0.6423 0.08166 0.9535 +TMCO4 -0.68 0.08216 0.9575 +STX12 0.2526 0.08372 0.9575 +LPPR5 0.4957 0.08319 0.9575 +SLC16A1 -0.3904 0.08384 0.9575 +HIST2H2AC -0.6177 0.08331 0.9575 +UNC5B -0.655 0.08316 0.9575 +DLG2 0.4321 0.08343 0.9575 +EPS8 -0.5223 0.0829 0.9575 +TMED10 -0.2748 0.08272 0.9575 +ZNF668 0.2764 0.08363 0.9575 +CDH5 -0.6796 0.08264 0.9575 +SERPINF2 -0.6734 0.08263 0.9575 +CCL2 -0.6794 0.08289 0.9575 +NSF 0.2745 0.08307 0.9575 +TBX2 -0.5658 0.0821 0.9575 +NANP -0.3152 0.08238 0.9575 +LAMA5 -0.4893 0.08354 0.9575 +APOL1 -0.6811 0.08247 0.9575 +RPL14 -0.537 0.08355 0.9575 +TXNRD3 -0.5488 0.08316 0.9575 +PEX5L 0.623 0.08268 0.9575 +LOC152217 0.4514 0.08238 0.9575 +TMEM171 -0.6135 0.08386 0.9575 +LRRC1 -0.3878 0.08257 0.9575 +SIM1 0.6275 0.0826 0.9575 +BVES -0.249 0.08263 0.9575 +LINC00242 0.5716 0.08302 0.9575 +PHF14 0.1599 0.08393 0.9575 +PLOD3 -0.4068 0.08346 0.9575 +XKR5 -0.6356 0.08384 0.9575 +RHOBTB2 0.4079 0.08357 0.9575 +ANXA1 -0.6786 0.08292 0.9575 +ATP2B3 0.5396 0.0839 0.9575 +SMAP2 0.2954 0.08422 0.9598 +MELK -0.5682 0.08424 0.9598 +IFI16 -0.6473 0.0848 0.9611 +LRRC52 0.6609 0.08565 0.9611 +HHAT -0.4914 0.08442 0.9611 +INPPL1 -0.3374 0.08545 0.9611 +TUBA1B -0.2308 0.08554 0.9611 +AACS -0.4244 0.08516 0.9611 +IGDCC4 -0.6063 0.08495 0.9611 +CD276 -0.2418 0.08544 0.9611 +ACAN -0.675 0.08512 0.9611 +LINC00526 0.4174 0.08504 0.9611 +ZNF675 0.2529 0.08507 0.9611 +IRF2BP1 0.189 0.08564 0.9611 +NEU4 0.6273 0.0854 0.9611 +CXADR 0.2793 0.08566 0.9611 +PDCD6IP -0.3005 0.08529 0.9611 +CHSY3 -0.6706 0.08494 0.9611 +PPP1R10 0.4539 0.08556 0.9611 +AMPH 0.4514 0.08561 0.9611 +MEGF9 0.3088 0.08556 0.9611 +MIR181A2HG 0.4623 0.0857 0.9611 +RPL7A -0.4194 0.08505 0.9611 +KIF4A -0.4928 0.08548 0.9611 +MORF4L2 -0.4217 0.0847 0.9611 +CORO1B -0.275 0.08577 0.9611 +IL34 -0.6733 0.08602 0.9627 +WNT5A -0.604 0.08596 0.9627 +PABPC3 -0.4561 0.08631 0.9632 +MCF2L 0.4215 0.08624 0.9632 +SAMD14 0.2885 0.08656 0.9632 +ZFP28 0.6693 0.08651 0.9632 +ZNF300 0.6722 0.08654 0.9632 +GTF2E2 -0.3225 0.0862 0.9632 +FNBP1 -0.3116 0.08656 0.9632 +PTGDS -0.6437 0.08661 0.9632 +ARSE -0.6553 0.08666 0.9632 +TMSB15B -0.449 0.08644 0.9632 +ROBO3 0.6583 0.08676 0.9637 +PPP1R26 0.2834 0.08692 0.9649 +SLC25A45 -0.6618 0.08698 0.9649 +ZSCAN2 0.2606 0.08722 0.9659 +WDR73 0.2182 0.08726 0.9659 +CCDC8 -0.5492 0.08734 0.9659 +KPNA4 0.1613 0.08735 0.9659 +GPSM1 0.3101 0.08737 0.9659 +SPTLC1 -0.2046 0.08751 0.9668 +KIAA0090 -0.1397 0.08852 0.9691 +S1PR1 0.5345 0.0891 0.9691 +GNAT2 -0.6669 0.08904 0.9691 +PPAPDC1A 0.649 0.08811 0.9691 +DOC2GP -0.6662 0.08905 0.9691 +YARS2 -0.258 0.08867 0.9691 +NPFF -0.5777 0.08812 0.9691 +GAS2L3 -0.4156 0.08858 0.9691 +LRP10 -0.4314 0.08794 0.9691 +CHP -0.2315 0.08844 0.9691 +PDPK1 0.1796 0.08889 0.9691 +BCL6B 0.6665 0.0892 0.9691 +TRIM37 0.2629 0.08866 0.9691 +CDC25B -0.2456 0.08866 0.9691 +SNX5 -0.2604 0.08874 0.9691 +KCNS1 -0.6663 0.08903 0.9691 +SEPT5 0.4582 0.08914 0.9691 +GCAT -0.3492 0.08926 0.9691 +ZBED4 0.2526 0.08822 0.9691 +LOC440944 0.3654 0.08809 0.9691 +THG1L -0.383 0.08836 0.9691 +SQSTM1 -0.2957 0.08872 0.9691 +CLIC1 -0.3766 0.08873 0.9691 +COL10A1 -0.5477 0.08804 0.9691 +C9orf37 0.263 0.08917 0.9691 +ELK1 -0.5244 0.08918 0.9691 +NCAPD2 -0.3753 0.08946 0.9701 +NFKB1 -0.4355 0.08945 0.9701 +MOAP1 0.3199 0.08968 0.9711 +RFPL1-AS1 0.5184 0.08962 0.9711 +SREK1 -0.275 0.08979 0.9717 +NTN4 0.4279 0.08986 0.9718 +RPL23A -0.4586 0.08997 0.9724 +LOC100289178 -0.5336 0.09209 0.9726 +CSF1 -0.5422 0.0909 0.9726 +ATP1A4 0.6566 0.09242 0.9726 +ASPM -0.5813 0.09211 0.9726 +VIM -0.3059 0.09239 0.9726 +FGFBP3 0.5134 0.09256 0.9726 +TMEM180 0.3082 0.09306 0.9726 +LRFN4 0.2951 0.09052 0.9726 +CLPB 0.2353 0.09255 0.9726 +CCDC82 0.2191 0.09305 0.9726 +EXPH5 -0.6385 0.09019 0.9726 +SHMT2 -0.4061 0.09325 0.9726 +STARD13 -0.5916 0.09152 0.9726 +NDRG2 -0.3444 0.09292 0.9726 +DIO3 -0.6516 0.0904 0.9726 +CATSPER2 -0.5356 0.09049 0.9726 +KIAA1024 0.4764 0.09062 0.9726 +SYT17 0.5178 0.09162 0.9726 +SLC6A2 -0.6315 0.09254 0.9726 +MT1F -0.5865 0.092 0.9726 +SREBF1 -0.2865 0.09019 0.9726 +FAM18B1 0.2447 0.09048 0.9726 +SLFN5 -0.6274 0.09319 0.9726 +PECAM1 -0.5699 0.09272 0.9726 +RIT2 0.6243 0.09292 0.9726 +SKA1 -0.5624 0.09233 0.9726 +ZNF132 0.6444 0.09192 0.9726 +PQLC3 -0.6393 0.09059 0.9726 +CCDC85A 0.5345 0.09219 0.9726 +ITGA4 -0.6476 0.09164 0.9726 +PP14571 0.4537 0.09165 0.9726 +COL6A1 -0.6322 0.09046 0.9726 +S100B -0.6302 0.09097 0.9726 +IFT27 0.2014 0.09252 0.9726 +NPTXR 0.4734 0.09322 0.9726 +TMEM108 0.4143 0.09141 0.9726 +JAKMIP1 0.5669 0.0922 0.9726 +PRDM8 0.4432 0.09296 0.9726 +MANBA -0.4409 0.09101 0.9726 +BBS7 0.1647 0.09211 0.9726 +CLCN3 0.2052 0.0931 0.9726 +LOC100505738 0.6572 0.09096 0.9726 +NLN 0.236 0.09043 0.9726 +PCDHB7 0.6516 0.09285 0.9726 +RGS14 -0.4462 0.09072 0.9726 +CBY3 0.5688 0.09162 0.9726 +HIST1H2AM -0.6372 0.09291 0.9726 +HLA-C -0.5912 0.09104 0.9726 +ELOVL5 -0.2373 0.09108 0.9726 +FAM46A -0.3156 0.09168 0.9726 +RPS12 -0.5287 0.09263 0.9726 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0.7092 0.9994 +TMLHE -0.1263 0.4446 0.9994 +SRY 0.1733 0.5634 0.9994 +RPS4Y1 0.005835 0.982 0.9994 +ZFY 0.07579 0.7536 0.9994 +PCDH11Y 0.2438 0.4669 0.9994 +TBL1Y 0.005455 0.9817 0.9994 +PRKY -0.02638 0.9189 0.9994 +GYG2P1 0.02611 0.9348 0.9994 +TTTY15 0.09599 0.6967 0.9994 +USP9Y 0.02068 0.9389 0.9994 +UTY -0.006581 0.9743 0.9994 +TMSB4Y 0.3906 0.2908 0.9994 +NLGN4Y 0.1078 0.6966 0.9994 +NCRNA00185 -0.1021 0.7475 0.9994 +TTTY14 -0.07339 0.8034 0.9994 +CD24 0.2029 0.4922 0.9994 +TXLNG2P -0.04094 0.846 0.9994 +KDM5D -0.03617 0.8703 0.9994 +TTTY10 0.04707 0.8783 0.9994 +EIF1AY 0.01021 0.9653 0.9994 +SPOCK1 0.003224 0.9909 0.9994 +MFSD3 0.003246 0.9909 0.9994 +SLC39A5 -0.004274 0.9912 0.9996 +FAM131C 0.002561 0.9947 0.9996 +NT5C1A -0.001084 0.9978 0.9996 +PPCS -0.0005147 0.9986 0.9996 +ASH1L -0.001619 0.9934 0.9996 +ARHGEF2 0.000823 0.9973 0.9996 +DSTYK -0.0005808 0.997 0.9996 +ADCK3 -0.002439 0.9924 0.9996 +TBCE 0.002789 0.9921 0.9996 +EDARADD -0.003762 0.9918 0.9996 +EPC1 -0.002248 0.9941 0.9996 +C10orf68 0.003616 0.9917 0.9996 +TMEM72-AS1 -0.002239 0.9948 0.9996 +PARG 0.0008872 0.9933 0.9996 +ANAPC16 -0.0007184 0.996 0.9996 +CHCHD1 -0.0003005 0.9983 0.9996 +GHITM 0.001448 0.9937 0.9996 +WAPAL 0.001466 0.9943 0.9996 +TAF5 0.002798 0.9922 0.9996 +SORCS1 0.0009783 0.997 0.9996 +TCERG1L 0.001615 0.9952 0.9996 +NKX6-2 -0.0008079 0.9984 0.9996 +HBBP1 -0.002008 0.9939 0.9996 +TRIM66 -0.001007 0.9977 0.9996 +DAK 0.001217 0.9964 0.9996 +PDE2A 0.003856 0.9917 0.9996 +USP35 -0.001857 0.9946 0.9996 +GPR83 0.002159 0.9951 0.9996 +ENDOD1 0.002419 0.9942 0.9996 +LOC100507424 -0.00107 0.9977 0.9996 +NTF3 -0.001251 0.9974 0.9996 +HTR7P1 0.0009986 0.998 0.9996 +DNM1L -0.001273 0.992 0.9996 +SLC38A2 0.0003228 0.9985 0.9996 +MCRS1 -0.001476 0.993 0.9996 +LOC100240734 0.002675 0.9945 0.9996 +TSPAN31 0.0008547 0.9961 0.9996 +MED13L 0.00217 0.9934 0.9996 +CPB2 0.002953 0.9939 0.9996 +RAP2A -0.0004082 0.9972 0.9996 +RAB2B 0.001374 0.995 0.9996 +ACTR10 -0.0004557 0.9986 0.9996 +EFCAB11 0.0008383 0.9982 0.9996 +SLC25A47 0.002553 0.9946 0.9996 +NDNL2 0.001534 0.9936 0.9996 +MGA 0.001088 0.9956 0.9996 +LRRC57 0.000468 0.9985 0.9996 +PPIP5K1 0.001302 0.9954 0.9996 +PAQR5 0.002054 0.9957 0.9996 +NEO1 0.001641 0.9947 0.9996 +UBE2Q2 0.0009179 0.9964 0.9996 +SNRNP25 -0.002516 0.9941 0.9996 +COG7 -0.0007377 0.9961 0.9996 +DHODH -0.0006192 0.9974 0.9996 +YWHAE 0.001269 0.9923 0.9996 +PEMT -0.0003723 0.998 0.9996 +ALKBH5 0.00143 0.9957 0.9996 +CWC25 0.00192 0.9932 0.9996 +CARD14 -0.003995 0.9915 0.9996 +PPP4R1 -0.000582 0.998 0.9996 +MEX3D -0.0007018 0.9969 0.9996 +ZNF433 0.001903 0.9925 0.9996 +ETV2 -0.0006367 0.9982 0.9996 +HIF3A -0.001561 0.9959 0.9996 +TULP2 0.002308 0.995 0.9996 +PRMT1 -0.001814 0.9939 0.9996 +KCNC3 -0.001947 0.9959 0.9996 +C19orf51 0.002026 0.9958 0.9996 +ZNF773 -0.003241 0.9913 0.9996 +SRSF7 0.002883 0.9919 0.9996 +C2orf74 0.001012 0.997 0.9996 +CD207 0.0006884 0.9986 0.9996 +COPS7B 0.001438 0.9931 0.9996 +MSL3P1 0.00214 0.9953 0.9996 +ING5 -0.001838 0.9942 0.9996 +PYGB 0.0003786 0.9972 0.9996 +B4GALT5 0.0008644 0.9974 0.9996 +TMPRSS15 -0.001422 0.9971 0.9996 +SH3BGR -0.0006994 0.9974 0.9996 +RRP1B 0.000589 0.9956 0.9996 +DIP2A -0.001075 0.9963 0.9996 +MTFP1 -0.0007746 0.9976 0.9996 +EP300 -0.0003846 0.9982 0.9996 +PACSIN2 -0.001144 0.9917 0.9996 +HIGD1A -0.00144 0.9942 0.9996 +GNAT1 0.0007149 0.9985 0.9996 +FAM208A 0.0005188 0.9984 0.9996 +ID2B -0.00391 0.992 0.9996 +RSRC1 0.0004531 0.9983 0.9996 +GPR160 0.00134 0.9971 0.9996 +TNK2 -0.001609 0.996 0.9996 +SENP5 -0.0003959 0.9986 0.9996 +SLBP -0.0007454 0.9963 0.9996 +C4orf19 0.003242 0.9934 0.9996 +TMEM33 0.001515 0.9923 0.9996 +LRRC66 -0.0006605 0.9985 0.9996 +NPY5R -0.002376 0.9952 0.9996 +NDUFS6 -0.0009438 0.9936 0.9996 +ZNF622 0.001756 0.9924 0.9996 +FAM151B 0.002005 0.9956 0.9996 +RBM27 -0.001799 0.9931 0.9996 +TIGD6 0.002251 0.9943 0.9996 +FAM114A2 0.0006701 0.9984 0.9996 +LOC100507194 -0.004099 0.9916 0.9996 +PRRC2A 0.0007916 0.9938 0.9996 +TAF11 0.000735 0.9956 0.9996 +PXT1 -0.002307 0.9952 0.9996 +GLP1R -0.001237 0.9971 0.9996 +TCP1 -0.00206 0.9931 0.9996 +CCM2 -0.000938 0.9955 0.9996 +WBSCR16 0.001843 0.9928 0.9996 +LOC155060 -0.003811 0.9916 0.9996 +C8orf42 0.001161 0.9975 0.9996 +CSGALNACT1 -0.001458 0.9967 0.9996 +PPAPDC1B 0.0008906 0.9974 0.9996 +LINC00535 0.003013 0.9929 0.9996 +VPS28 0.0005436 0.9965 0.9996 +DNAJC25 -0.000678 0.9974 0.9996 +TSC1 0.001054 0.9962 0.9996 +RLIM -0.001962 0.9932 0.9996 +TAF9B -0.002379 0.9915 0.9996 +DDX3Y -0.001194 0.996 0.9996 +ZNRF2 0.0002994 0.9988 0.9998 +FNDC5 0.0003447 0.9991 0.9998 +KANSL2 0.0002676 0.9992 0.9998 +ISCU 0.0001513 0.9992 0.9998 +CUEDC1 -0.0002373 0.999 0.9998 +ZNF559 0.0002839 0.9994 0.9998 +LUST 0.0003314 0.9993 0.9998 +ZNF346 0.0001664 0.999 0.9998 +LOC100128750 -0.0004801 0.999 0.9998 +USP11 -0.0003655 0.9991 0.9998 +N4BP1 -0.0001139 0.9994 0.9998 +CIRBP-AS1 0.0002081 0.9995 0.9998 +PKLR -0.0001906 0.9996 0.9999 +OBFC1 -4.637e-05 0.9998 0.9999 +FKBP8 -5.51e-05 0.9997 0.9999 +LRMP -3.651e-05 0.9999 1 +OXSM 8.828e-06 1 1 \ No newline at end of file diff -r 000000000000 -r 59ebf2c42c0e test-data/labels.tab --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/labels.tab Tue Oct 23 06:57:26 2018 -0400 @@ -0,0 +1,11 @@ +Gene log2FoldChange pvalue padj +DOK6 0.51 1.861e-08 0.0003053 +TBX5 -2.129 5.655e-08 0.0004191 +SLC32A1 0.9003 7.664e-08 0.0004191 +IFITM1 -1.687 3.735e-06 0.006809 +NUP93 0.3659 3.373e-06 0.006809 +EMILIN2 1.534 2.976e-06 0.006809 +TPX2 -0.9974 2.097e-06 0.006809 +LAMA2 -1.425 2.39e-06 0.006809 +CAV2 -1.052 3.213e-06 0.006809 +TNN -1.658 8.973e-06 0.01472 diff -r 000000000000 -r 59ebf2c42c0e test-data/out.pdf Binary file test-data/out.pdf has changed diff -r 000000000000 -r 59ebf2c42c0e test-data/out2.pdf Binary file test-data/out2.pdf has changed diff -r 000000000000 -r 59ebf2c42c0e volcanoplot.R --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/volcanoplot.R Tue Oct 23 06:57:26 2018 -0400 @@ -0,0 +1,88 @@ +# setup R error handling to go to stderr +options( show.error.messages=F, error = function () { cat( geterrmessage(), file=stderr() ); q( "no", 1, F ) } ) + +# we need that to not crash galaxy with an UTF8 error on German LC settings. +loc <- Sys.setlocale("LC_MESSAGES", "en_US.UTF-8") + +suppressPackageStartupMessages({ + library(dplyr) + library(getopt) + library(ggplot2) + library(ggrepel) +}) + +options(stringAsFactors = FALSE, useFancyQuotes = FALSE) +args <- commandArgs(trailingOnly = TRUE) + +spec <- matrix(c( + "input", "i", 1, "character", + "fdr_col", "a", 1, "integer", + "pval_col", "p", 1, "integer", + "lfc_col", "c", 1, "integer", + "label_col", "l", 1, "integer", + "signif_thresh", "s", 1, "double", + "lfc_thresh", "x", 1, "double", + "label_file", "f", 1, "character", + "top_num", "t", 1, "integer", + "title", "T", 1, "character", + "xlab", "X", 1, "character", + "ylab", "Y", 1, "character", + "legend", "L", 1, "character", + "llabs", "z", 1, "character"), + byrow=TRUE, ncol=4) +opt <- getopt(spec) + +# Below modified from http://www.gettinggeneticsdone.com/2016/01/repel-overlapping-text-labels-in-ggplot2.html + +results <- read.delim(opt$input) +results$fdr <- results[, opt$fdr_col] +results$Pvalue <- results[, opt$pval_col] +results$logFC <- results[, opt$lfc_col] +results$labels <- results[, opt$label_col] +label_down <- unlist(strsplit(opt$llabs, split=","))[1] +label_notsig <- unlist(strsplit(opt$llabs, split=","))[2] +label_up <- unlist(strsplit(opt$llabs, split=","))[3] +colours <- setNames(c("cornflowerblue","grey","firebrick"),c(label_down,label_notsig,label_up)) + +results <- mutate(results, sig=ifelse((fdropt$lfc_thresh), label_up, ifelse((fdr% top_n(opt$top_num) +} else { + tolabel <- filter(results, fdr + create a volcano plot + + r-ggplot2 + r-ggrepel + r-dplyr + r-getopt + + /dev/null | grep -v -i "WARNING: ")", ggrepel version" $(R --vanilla --slave -e "library(ggrepel); cat(sessionInfo()\$otherPkgs\$ggrepel\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", dplyr version" $(R --vanilla --slave -e "library(dplyr); cat(sessionInfo()\$otherPkgs\$dplyr\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", getopt version" $(R --vanilla --slave -e "library(getopt); cat(sessionInfo()\$otherPkgs\$getopt\$Version)" 2> /dev/null | grep -v -i "WARNING: ") + ]]> + + + + + + + + + + + + + + + + + + + + + +
+ + + + + +
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + \ No newline at end of file