Mercurial > repos > iuc > vsearch

comparison vsearch_macros.xml @ 4:576963db5f1b draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vsearch commit 89e3a62dd6cbc8bcec84d08c1710bfb4e7f5938f
author iuc
date Fri, 20 Jan 2017 03:39:22 -0500
parents 4258854759ba
children b3c7199d8786
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3:4258854759ba 4:576963db5f1b
1 <macros> 1 <macros>
2 <xml name="requirements"> 2 <xml name="requirements">
3 <requirements> 3 <requirements>
4 <requirement type="package" version="1.9.7">vsearch</requirement> 4 <requirement type="package" version="@VERSION@">vsearch</requirement>
5 </requirements> 5 </requirements>
6 </xml> 6 </xml>
7 <token name="@VERSION@">1.9.7</token> 7 <token name="@VERSION@">1.9.7</token>
8 8
9 <xml name="version_command"> 9 <xml name="version_command">
157 <when value="no" /> 157 <when value="no" />
158 </conditional> 158 </conditional>
159 </xml> 159 </xml>
160 160
161 <xml name="general_output"> 161 <xml name="general_output">
162 <param name="outputs" type="select" multiple="True" label="Select output files" help=""> 162 <param name="outputs" type="select" multiple="True" optional="false" label="Select output files" help="">
163 <option value="--alnout">Human-readable alignment output</option> 163 <option value="--alnout">Human-readable alignment output</option>
164 <option value="--blast6out" selected="True">Blast-like tab-separated output</option> 164 <option value="--blast6out" selected="True">Blast-like tab-separated output</option>
165 <option value="--fastapairs">Write query/target pairs of sequences</option> 165 <option value="--fastapairs">Write query/target pairs of sequences</option>
166 <yield/> 166 <yield/>
167 <validator type="no_options" message="Please select at least one output." />
168 </param> 167 </param>
169 </xml> 168 </xml>
170 169
171 <token name="@EXTERNAL_DOCUMENTATION@"> 170 <token name="@EXTERNAL_DOCUMENTATION@">
172 <![CDATA[ 171 <![CDATA[
173 172
174 For details about this tool, please refer to the `github account <https://github.com/torognes/vsearch>`_ or the `vsearch manual <https://github.com/torognes/vsearch/raw/master/doc/vsearch_manual.pdf>`_. 173 For details about this tool, please refer to the `GitHub repository <https://github.com/torognes/vsearch>`_ or the `vsearch manual <https://github.com/torognes/vsearch/releases/download/v1.9.7/vsearch_manual.pdf>`_.
175 174
176 ]]> 175 ]]>
177 </token> 176 </token>
178 <token name="@USERFIELDS_HELP@"> 177 <token name="@USERFIELDS_HELP@">
179 **Available fields in user defined tabular output** 178 **Available fields in user defined tabular output**