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comparison test-data/alignment_result1.fasta @ 5:b3c7199d8786 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vsearch commit e0cd7ae10ce97bed51594e7cc0b969a803d698b7
author iuc
date Fri, 07 Sep 2018 11:31:31 -0400
parents 4258854759ba
children
comparison
equal deleted inserted replaced
4:576963db5f1b 5:b3c7199d8786
1 vsearch --threads 1 --notrunclabels --id 0.97 --iddef 2 --allpairs_global /tmp/tmpadk_l_yr/files/000/dataset_1.dat --alnout /tmp/tmpadk_l_yr/files/000/dataset_2.dat --query_cov 0.95 1 vsearch --threads 1 --notrunclabels --id 0.97 --iddef 2 --allpairs_global /tmp/tmp_3hOhj/files/000/dataset_1.dat --alnout /tmp/tmp_3hOhj/files/000/dataset_2.dat --query_cov 0.95
2 vsearch v1.9.7_linux_x86_64, 7.7GB RAM, 4 cores 2 vsearch v2.8.3_linux_x86_64, 15.5GB RAM, 4 cores
3 3
4 Query >RF00177;SSU_rRNA_bacteria;CP001742.1/177780-176277 666510:Acidilobus saccharovorans 345-15 4 Query >RF00177;SSU_rRNA_bacteria;CP001742.1/177780-176277 666510:Acidilobus saccharovorans 345-15
5 %Id TLen Target 5 %Id TLen Target
6 100% 1497 RF01959;SSU_rRNA_archaea;CP001742.1/177775-176279 666510:Acidilobus saccharovorans 345-15 6 100% 1497 RF01959;SSU_rRNA_archaea;CP001742.1/177775-176279 666510:Acidilobus saccharovorans 345-15
7 7
42 42
43 Qry 518 + UCGGGACGUCUACUGGGCCUAAAGCGCCCGUAGCCGGCCCCGUAAGUCCCUCCUGAAAGCCCUG 581 43 Qry 518 + UCGGGACGUCUACUGGGCCUAAAGCGCCCGUAGCCGGCCCCGUAAGUCCCUCCUGAAAGCCCUG 581
44 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 44 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
45 Tgt 513 + UCGGGACGUCUACUGGGCCUAAAGCGCCCGUAGCCGGCCCCGUAAGUCCCUCCUGAAAGCCCUG 576 45 Tgt 513 + UCGGGACGUCUACUGGGCCUAAAGCGCCCGUAGCCGGCCCCGUAAGUCCCUCCUGAAAGCCCUG 576
46 46
47 Qry 582 + GGCUCAACCCAGGGAGUGGGGGGGAUACUGCGGGGCUAGGGGGCGGGAAAGGCCGGGGGUACCC 645 47 Qry 582 + GGCUCAACCcagggagugggggggauacugcggggcuagggggcgggaaaggccggggguaccc 645
48 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 48 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
49 Tgt 577 + GGCUCAACCCAGGGAGUGGGGGGGAUACUGCGGGGCUAGGGGGCGGGAAAGGCCGGGGGUACCC 640 49 Tgt 577 + GGCUCAACCcagggagugggggggauacugcggggcuagggggcgggaaaggccgggggUACCC 640
50 50
51 Qry 646 + CAGGGGUAGGGGCGAAAUCCGAUAAUCCCUGGGGGACCACCAGUGGCGAAAGCGCCCGGCUGGA 709 51 Qry 646 + cagggguaggggcGAAAUCCGAUAAUCCCUGGGGGACCACCAGUGGCGAAAGCGCCCGGCUGGA 709
52 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 52 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
53 Tgt 641 + CAGGGGUAGGGGCGAAAUCCGAUAAUCCCUGGGGGACCACCAGUGGCGAAAGCGCCCGGCUGGA 704 53 Tgt 641 + CAGGGGUAGGGGCGAAAUCCGAUAAUCCCUGGGGGACCACCAGUGGCGAAAGCGCCCGGCUGGA 704
54 54
55 Qry 710 + ACGCGCCCGACGGUGAGGGGCGAAAGCCGGGGGAGCGAACCGGAUUAGAUACCCGGGUAGUCCC 773 55 Qry 710 + ACGCGCCCGACGGUGAGGGGCGAAAGCCGGGGGAGCGAACCGGAUUAGAUACCCGGGUAGUCCC 773
56 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 56 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||