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comparison masking.xml @ 2:f29e21388219 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vsearch commit 64c1c4c664c6a131d897f574dc849f5668fa97d2
author iuc
date Thu, 17 Dec 2015 12:53:39 -0500
parents fae6527990af
children 4258854759ba
comparison
equal deleted inserted replaced
1:8c4e2933a17a 2:f29e21388219
1 <tool id="vsearch_masking" name="VSearch masking" version="@VERSION@.0"> 1 <tool id="vsearch_masking" name="VSearch masking" version="@VERSION@.1">
2 <description></description> 2 <description></description>
3 <macros> 3 <macros>
4 <import>vsearch_macros.xml</import> 4 <import>vsearch_macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements" /> 6 <expand macro="requirements" />
8 <expand macro="version_command" /> 8 <expand macro="version_command" />
9 <command> 9 <command>
10 <![CDATA[ 10 <![CDATA[
11 vsearch 11 vsearch
12 @GENERAL@ 12 @GENERAL@
13 #if $qmask != 'no': 13 #if str( $qmask ) != 'no':
14 --qmask $qmask 14 --qmask "$qmask"
15 #end if 15 #end if
16 $hardmask 16 $hardmask
17 --maskfasta "$infile" 17 --maskfasta "$infile"
18 --output $outfile 18 --output "$outfile"
19 19
20 ]]> 20 ]]>
21 </command> 21 </command>
22 <inputs> 22 <inputs>
23 <param name="infile" type="data" format="fasta" label="Select your FASTA file" help="(--maskfasta)" /> 23 <param name="infile" type="data" format="fasta" label="Select your FASTA file" help="(--maskfasta)" />
66 --output FILENAME output to specified FASTA file 66 --output FILENAME output to specified FASTA file
67 --qmask mask seqs with "dust", "soft" or "none" method (dust) 67 --qmask mask seqs with "dust", "soft" or "none" method (dust)
68 68
69 @EXTERNAL_DOCUMENTATION@ 69 @EXTERNAL_DOCUMENTATION@
70 70
71 -------
72
73 @REFERENCES@
74
75 71
76 ]]> 72 ]]>
77 </help> 73 </help>
78 <expand macro="citations" /> 74 <expand macro="citations" />
79 </tool> 75 </tool>