Mercurial > repos > iuc > vsearch
comparison shuffling.xml @ 2:f29e21388219 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vsearch commit 64c1c4c664c6a131d897f574dc849f5668fa97d2
author | iuc |
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date | Thu, 17 Dec 2015 12:53:39 -0500 |
parents | fae6527990af |
children | 4258854759ba |
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1:8c4e2933a17a | 2:f29e21388219 |
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1 <tool id="vsearch_shuffling" name="VSearch shuffling" version="@VERSION@.0"> | 1 <tool id="vsearch_shuffling" name="VSearch shuffling" version="@VERSION@.1"> |
2 <description></description> | 2 <description></description> |
3 <macros> | 3 <macros> |
4 <import>vsearch_macros.xml</import> | 4 <import>vsearch_macros.xml</import> |
5 </macros> | 5 </macros> |
6 <expand macro="requirements" /> | 6 <expand macro="requirements" /> |
8 <expand macro="version_command" /> | 8 <expand macro="version_command" /> |
9 <command> | 9 <command> |
10 <![CDATA[ | 10 <![CDATA[ |
11 vsearch | 11 vsearch |
12 @GENERAL@ | 12 @GENERAL@ |
13 --output $outfile | 13 --output "$outfile" |
14 --seed $seed | 14 --seed "$seed" |
15 --shuffle $infile | 15 --shuffle "$infile" |
16 --topn $topn | 16 #if str( $topn ): |
17 --topn "$topn" | |
18 #end if | |
17 ]]> | 19 ]]> |
18 </command> | 20 </command> |
19 <inputs> | 21 <inputs> |
20 <param name="infile" type="data" format="fasta" label="Select your FASTA file" help="(--shuffle)" /> | 22 <param name="infile" type="data" format="fasta" label="Select your FASTA file" help="(--shuffle)" /> |
21 <param name="seed" type="integer" value="0" label="Seed" | 23 <param name="seed" type="integer" value="0" label="Seed" |
46 --topn INT output just first n sequences | 48 --topn INT output just first n sequences |
47 | 49 |
48 | 50 |
49 @EXTERNAL_DOCUMENTATION@ | 51 @EXTERNAL_DOCUMENTATION@ |
50 | 52 |
51 ------- | |
52 | |
53 @REFERENCES@ | |
54 | |
55 | 53 |
56 ]]> | 54 ]]> |
57 </help> | 55 </help> |
58 <expand macro="citations" /> | 56 <expand macro="citations" /> |
59 </tool> | 57 </tool> |