Mercurial > repos > iuc > vsearch

diff vsearch_macros.xml @ 5:b3c7199d8786 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vsearch commit e0cd7ae10ce97bed51594e7cc0b969a803d698b7
author iuc
date Fri, 07 Sep 2018 11:31:31 -0400
parents 576963db5f1b
children
line wrap: on
line diff
--- a/vsearch_macros.xml	Fri Jan 20 03:39:22 2017 -0500
+++ b/vsearch_macros.xml	Fri Sep 07 11:31:31 2018 -0400
@@ -4,7 +4,7 @@
             <requirement type="package" version="@VERSION@">vsearch</requirement>
         </requirements>
     </xml>
-    <token name="@VERSION@">1.9.7</token>
+    <token name="@VERSION@">2.8.3</token>
 
     <xml name="version_command">
         <version_command>vsearch --version | head -n 1 | awk '{print $2}' | sed 's/,//'</version_command>
@@ -40,7 +40,7 @@
     </xml>
 
     <xml name="hardmask">
-        <param name="hardmask" type="boolean" truevalue="--hardmask" falsevalue="" checked="False" 
+        <param name="hardmask" type="boolean" truevalue="--hardmask" falsevalue="" checked="False"
             label="Mask by replacing with N instead of lower case" help="(--hardmask)"/>
     </xml>
 
@@ -57,9 +57,9 @@
     </xml>
 
     <xml name="self_and_selfid">
-        <param name="self_param" type="boolean" truevalue="--self" falsevalue="" checked="False" 
+        <param name="self_param" type="boolean" truevalue="--self" falsevalue="" checked="False"
             label="Exclude identical labels for --uchime_ref" help="(--self)"/>
-        <param name="selfid_param" type="boolean" truevalue="--selfid" falsevalue="" checked="False" 
+        <param name="selfid_param" type="boolean" truevalue="--selfid" falsevalue="" checked="False"
             label="Exclude identical sequences for --uchime_ref" help="(--selfid)"/>
     </xml>
 
@@ -71,17 +71,17 @@
     </xml>
 
     <xml name="sizein">
-        <param name="sizein" type="boolean" truevalue="--sizein" falsevalue="" checked="False" 
+        <param name="sizein" type="boolean" truevalue="--sizein" falsevalue="" checked="False"
             label="Read abundance annotation from input" help="(--sizein)"/>
     </xml>
 
     <xml name="sizeout">
-        <param name="sizeout" type="boolean" truevalue="--sizeout" falsevalue="" checked="False" 
+        <param name="sizeout" type="boolean" truevalue="--sizeout" falsevalue="" checked="False"
             label="Write cluster abundances to centroid file" help="(--sizeout)"/>
     </xml>
 
     <xml name="uclust_like_output">
-        <param name="uc" type="boolean" truevalue="--uc" falsevalue="" checked="False" 
+        <param name="uc" type="boolean" truevalue="--uc" falsevalue="" checked="False"
             label="UCLUST-like output" help="(--uc)"/>
     </xml>
 
@@ -170,7 +170,7 @@
     <token name="@EXTERNAL_DOCUMENTATION@">
 <![CDATA[
 
-For details about this tool, please refer to the `GitHub repository <https://github.com/torognes/vsearch>`_ or the `vsearch manual <https://github.com/torognes/vsearch/releases/download/v1.9.7/vsearch_manual.pdf>`_.
+For details about this tool, please refer to the `GitHub repository <https://github.com/torognes/vsearch>`_ or the `vsearch manual <https://github.com/torognes/vsearch/releases/download/v2.8.3/vsearch_manual.pdf>`_.
 
 ]]>
     </token>